Ggra8489.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8489.t1
Unique NameGgra8489.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:865582..866244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMC072CT
Preferred nameTMED10
PFAMsEMP24_GP25L
Max annot lvl2759|Eukaryota
KEGG koko:K20347,ko:K20352,ko:K20878
KEGG TC1.I.1.1.3,9.B.188,9.B.188.1.2
GOsGO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0001655,GO:0001822,GO:0002790,GO:0003002,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0005886,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007154,GO:0007267,GO:0007275,GO:0007389,GO:0008104,GO:0008150,GO:0008565,GO:0009306,GO:0009953,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0019222,GO:0019905,GO:0022607,GO:0023052,GO:0023061,GO:0030133,GO:0030134,GO:0030135,GO:0030136,GO:0030137,GO:0030140,GO:0030141,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030667,GO:0031090,GO:0031224,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033036,GO:0033116,GO:0034248,GO:0034613,GO:0034622,GO:0035459,GO:0035964,GO:0042175,GO:0042221,GO:0042588,GO:0042589,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043279,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044877,GO:0045055,GO:0045184,GO:0046662,GO:0046903,GO:0046907,GO:0048042,GO:0048193,GO:0048194,GO:0048199,GO:0048200,GO:0048205,GO:0048207,GO:0048208,GO:0048513,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050795,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051259,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060255,GO:0061024,GO:0061355,GO:0065003,GO:0065007,GO:0070727,GO:0070765,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072001,GO:0080090,GO:0090114,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098797,GO:0098805,GO:0098827,GO:0099503,GO:0198738,GO:1901698,GO:1902003,GO:1902991,GO:2000241
Evalue4.93e-07
EggNOG OGsKOG1691@1|root,KOG1691@2759|Eukaryota
EC2.7.11.1
Descriptionprotein transport
COG categoryT
BRITEko00000,ko01000,ko01001,ko02000,ko03036,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8489Ggra8489Gracilaria gracilis GNS1m malegenetig00000041_pilon 865582..866244 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8489.t1.stop1Ggra8489.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 865582..865584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8489.t1.CDS1Ggra8489.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 865582..866244 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8489.t1.exon1Ggra8489.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 865582..866244 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8489.t1.start1Ggra8489.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 866242..866244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8489.t1Ggra8489.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 865582..866244 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8489.t1 ID=Ggra8489.t1|Name=Ggra8489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=221bp
MGRSYGILVFFALLVAIDFVRAVQFAMSFGEKKCFMEHVPRGSTLYVEIR
TSSTADPLAIDVFIANERGVIVANKAAIADQKFTIPGSGQTHNNPALEGY
RFCFLNQIHPHQVPIKGETRVSFNVRFGAGGKGVQRVELLKSDQIGTTND
KIRSLEDDLNRVLTQMDDLKEQEAVLSRYNSATSKHLVTLSSLTSIIIIA
IGALQFDAVKVTLRQRKAIP*
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spliced messenger RNA

>Ggra8489.t1 ID=Ggra8489.t1|Name=Ggra8489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00000041_pilon:865582..866244- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACGTTCTTATGGAATTCTTGTGTTTTTCGCATTGTTGGTTGCAAT
TGACTTTGTCCGGGCAGTGCAGTTCGCGATGAGCTTTGGTGAGAAAAAGT
GCTTCATGGAGCACGTTCCTCGAGGCTCCACACTCTACGTCGAGATTCGC
ACGAGTTCCACCGCAGACCCACTTGCCATTGACGTTTTCATAGCAAATGA
ACGCGGAGTTATCGTGGCTAATAAAGCAGCGATTGCAGATCAAAAGTTCA
CAATCCCAGGCTCAGGACAGACTCATAACAATCCTGCGCTCGAGGGATAC
CGCTTCTGTTTCTTGAATCAAATACATCCGCACCAAGTGCCTATAAAGGG
CGAAACTCGCGTGTCGTTTAATGTTCGCTTTGGAGCTGGCGGGAAAGGTG
TACAACGGGTTGAACTGCTGAAAAGTGATCAGATTGGAACGACGAACGAT
AAAATTCGCAGTCTTGAAGATGATTTGAATCGAGTGTTAACACAGATGGA
TGATCTCAAAGAACAAGAGGCAGTTTTATCCCGATACAATAGCGCCACTT
CCAAGCATCTGGTAACCTTGAGTTCCCTTACAAGCATCATAATCATTGCC
ATTGGTGCTTTGCAATTCGATGCAGTTAAGGTTACACTGCGTCAAAGAAA
GGCCATTCCCTAA
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protein sequence of Ggra8489.t1

>Ggra8489.t1 ID=Ggra8489.t1|Name=Ggra8489.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=221bp
MGRSYGILVFFALLVAIDFVRAVQFAMSFGEKKCFMEHVPRGSTLYVEIR
TSSTADPLAIDVFIANERGVIVANKAAIADQKFTIPGSGQTHNNPALEGY
RFCFLNQIHPHQVPIKGETRVSFNVRFGAGGKGVQRVELLKSDQIGTTND
KIRSLEDDLNRVLTQMDDLKEQEAVLSRYNSATSKHLVTLSSLTSIIIIA
IGALQFDAVKVTLRQRKAIP*
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mRNA from alignment at tig00000041_pilon:865582..866244-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8489.t1 ID=Ggra8489.t1|Name=Ggra8489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00000041_pilon:865582..866244- (Gracilaria gracilis GNS1m male)
ATGGGACGTTCTTATGGAATTCTTGTGTTTTTCGCATTGTTGGTTGCAAT
TGACTTTGTCCGGGCAGTGCAGTTCGCGATGAGCTTTGGTGAGAAAAAGT
GCTTCATGGAGCACGTTCCTCGAGGCTCCACACTCTACGTCGAGATTCGC
ACGAGTTCCACCGCAGACCCACTTGCCATTGACGTTTTCATAGCAAATGA
ACGCGGAGTTATCGTGGCTAATAAAGCAGCGATTGCAGATCAAAAGTTCA
CAATCCCAGGCTCAGGACAGACTCATAACAATCCTGCGCTCGAGGGATAC
CGCTTCTGTTTCTTGAATCAAATACATCCGCACCAAGTGCCTATAAAGGG
CGAAACTCGCGTGTCGTTTAATGTTCGCTTTGGAGCTGGCGGGAAAGGTG
TACAACGGGTTGAACTGCTGAAAAGTGATCAGATTGGAACGACGAACGAT
AAAATTCGCAGTCTTGAAGATGATTTGAATCGAGTGTTAACACAGATGGA
TGATCTCAAAGAACAAGAGGCAGTTTTATCCCGATACAATAGCGCCACTT
CCAAGCATCTGGTAACCTTGAGTTCCCTTACAAGCATCATAATCATTGCC
ATTGGTGCTTTGCAATTCGATGCAGTTAAGGTTACACTGCGTCAAAGAAA
GGCCATTCCCTAA
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Coding sequence (CDS) from alignment at tig00000041_pilon:865582..866244-

>Ggra8489.t1 ID=Ggra8489.t1|Name=Ggra8489.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=663bp|location=Sequence derived from alignment at tig00000041_pilon:865582..866244- (Gracilaria gracilis GNS1m male)
ATGGGACGTTCTTATGGAATTCTTGTGTTTTTCGCATTGTTGGTTGCAAT
TGACTTTGTCCGGGCAGTGCAGTTCGCGATGAGCTTTGGTGAGAAAAAGT
GCTTCATGGAGCACGTTCCTCGAGGCTCCACACTCTACGTCGAGATTCGC
ACGAGTTCCACCGCAGACCCACTTGCCATTGACGTTTTCATAGCAAATGA
ACGCGGAGTTATCGTGGCTAATAAAGCAGCGATTGCAGATCAAAAGTTCA
CAATCCCAGGCTCAGGACAGACTCATAACAATCCTGCGCTCGAGGGATAC
CGCTTCTGTTTCTTGAATCAAATACATCCGCACCAAGTGCCTATAAAGGG
CGAAACTCGCGTGTCGTTTAATGTTCGCTTTGGAGCTGGCGGGAAAGGTG
TACAACGGGTTGAACTGCTGAAAAGTGATCAGATTGGAACGACGAACGAT
AAAATTCGCAGTCTTGAAGATGATTTGAATCGAGTGTTAACACAGATGGA
TGATCTCAAAGAACAAGAGGCAGTTTTATCCCGATACAATAGCGCCACTT
CCAAGCATCTGGTAACCTTGAGTTCCCTTACAAGCATCATAATCATTGCC
ATTGGTGCTTTGCAATTCGATGCAGTTAAGGTTACACTGCGTCAAAGAAA
GGCCATTCCCTAA
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