Ggra8404.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8404.t1
Unique Name	Ggra8404.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	761

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:480733..483015 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705511.1
PFAMs	PTCB-BRCT,zf-AD
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10728
KEGG Pathway	ko03440,map03440
Evalue	9.71e-33
EggNOG OGs	KOG1929@1\|root,KOG1929@2759\|Eukaryota
Description	protein localization to site of double-strand break
COG category	G
BRITE	ko00000,ko00001,ko03032,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8404	Ggra8404	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 480733..483015 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8404.t1.start1	Ggra8404.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 480733..480735 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8404.t1.CDS1	Ggra8404.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 480733..483015 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8404.t1.exon1	Ggra8404.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 480733..483015 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8404.t1.stop1	Ggra8404.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 483013..483015 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8404.t1	Ggra8404.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 480733..483015 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:480733..483015+
coding sequence from alignment at tig00000041_pilon:480733..483015+

mRNA sequence

>Ggra8404.t1 ID=Ggra8404.t1|Name=Ggra8404.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=761bp
MKGHLRGDKLRLLSDGAQVIARSLFVPSSQLSPGIVFVDARNAHFLSPAL
LPAIAARVTMSAAVRASLTSFQSGRKSSMLSRKRQRPPPLQGCSVCVTDF
GDDDTVHIAAQIRRMGGEFSDDLRPKTTHLVCESAGSLMHRAVCQRNSRA
GVKPIAIVRQSWLQSCETASMFINCSPHVLLPLAGMILCSTGFDRDERDD
ISKTAVSLGASYSKSLSAECTHLICRAPTGDKYNFAKEVPHMFIVRLPWL
EQCAKLNLLVDESRFTLDTEDAREATTCSGTEVPTSMATSSVTNSSHVKD
HASFTKWQHAAPANVLDAATLYLTESPLRDNDKHAPLRAKALRLANLGGA
SISSELTDFVNYIVVVRMPIAPSKIQLIREAQEHGTIATTLEWLEDCILQ
QKLLDTAKYQVPQLMEVPMAESSQPSSQAQIITSSTFLGLRVAVGPLAVR
DASTAYSVCSQLSSGRGKILAHDAAGYVTSGSPTHVLCGHNVTSRELEAI
KDAQSRNSRVLKVTQFWVDMCVKAEGLLPVSVCALFGPVPYETPLQDFTA
QKIMLSISGFQNSRERDWNRRREVLKRLAVLLGAKCSERMRRRQTNYLIA
DGRSEDSEKVLKAREWGIKVVTHEWLLACARAGKVVGAEGYALGTEVTPT
RSPASKTGAAHSDSKTKGRVEMRDAEAINLFQKLTEKFDREAAEGGETAG
DEGVEENIRFTRRSRSTSREHMDDERSWSMDASQSQVIVHRDLTPPPSPT
QRVKRARQTL*

spliced messenger RNA

>Ggra8404.t1 ID=Ggra8404.t1|Name=Ggra8404.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2283bp|location=Sequence derived from alignment at tig00000041_pilon:480733..483015+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGGTCACCTGCGGGGCGACAAACTGCGCCTCCTATCCGATGGGGC
CCAGGTCATCGCCCGCTCCCTGTTCGTTCCATCGTCGCAGCTCTCGCCCG
GCATCGTCTTTGTGGACGCCCGAAACGCACACTTTCTCTCGCCCGCTCTA
CTGCCAGCCATTGCTGCGCGAGTCACCATGAGCGCGGCTGTGCGCGCTTC
ACTCACTTCCTTTCAGAGCGGCCGCAAGTCATCTATGCTCTCCCGAAAGC
GCCAGCGACCGCCGCCTCTGCAGGGATGCAGTGTCTGCGTCACTGATTTT
GGAGACGATGATACTGTCCATATTGCGGCGCAGATTCGCCGGATGGGTGG
TGAATTCAGTGATGACTTGCGTCCAAAAACCACGCACTTGGTGTGTGAGA
GTGCTGGTTCTTTGATGCATCGCGCAGTCTGTCAACGAAACAGTAGAGCG
GGTGTCAAGCCTATCGCCATTGTTCGTCAGTCTTGGTTGCAAAGTTGTGA
GACCGCGTCCATGTTTATAAACTGCTCGCCTCACGTGCTGCTGCCGTTGG
CGGGCATGATTCTGTGTTCCACTGGCTTCGATCGCGATGAGAGGGATGAC
ATATCCAAGACCGCCGTTTCGCTTGGAGCTTCCTATTCCAAGTCTCTCTC
CGCAGAGTGCACCCATCTCATCTGCAGGGCTCCCACCGGTGACAAGTACA
ACTTTGCAAAGGAAGTTCCACACATGTTCATCGTGCGTTTACCATGGCTG
GAACAATGTGCGAAGCTCAACTTGCTTGTGGACGAGAGTCGTTTCACACT
GGATACGGAGGATGCACGAGAAGCAACCACTTGCTCTGGAACAGAGGTCC
CCACCAGCATGGCCACCAGTAGCGTTACCAACTCGTCGCACGTCAAAGAT
CATGCGTCCTTTACCAAGTGGCAGCATGCCGCCCCAGCCAATGTTTTGGA
CGCCGCCACTCTTTATCTCACTGAGAGCCCGCTTCGTGATAATGACAAGC
ACGCTCCGTTACGAGCAAAAGCGCTGCGGCTTGCGAATCTGGGTGGTGCG
TCCATTTCGAGTGAGCTAACAGACTTTGTCAACTATATTGTCGTTGTTCG
CATGCCTATCGCGCCGTCGAAGATACAGCTAATTCGCGAAGCACAAGAAC
ATGGTACAATCGCCACCACTCTCGAATGGCTTGAAGATTGCATCTTGCAA
CAAAAACTGTTGGACACTGCCAAGTATCAAGTACCGCAACTGATGGAGGT
TCCAATGGCAGAATCTTCACAGCCTAGCAGTCAGGCACAAATCATAACCT
CTTCTACGTTTCTTGGGTTGCGTGTGGCTGTAGGACCGCTCGCCGTTCGT
GATGCTTCAACAGCATACAGTGTCTGTTCGCAGCTGTCTTCAGGGCGCGG
GAAGATCCTCGCACATGACGCCGCGGGATACGTGACGAGCGGGAGCCCGA
CGCATGTGCTGTGTGGACACAATGTGACTTCGAGGGAACTGGAGGCTATC
AAAGATGCGCAAAGCAGAAACTCGAGGGTTCTGAAGGTGACGCAGTTTTG
GGTTGACATGTGTGTGAAGGCAGAGGGCTTGTTGCCAGTTTCTGTATGCG
CGTTATTCGGTCCAGTGCCTTACGAAACTCCGTTGCAGGACTTTACCGCG
CAGAAAATTATGTTATCAATCAGTGGTTTTCAAAACTCGCGCGAACGAGA
CTGGAATCGACGACGAGAGGTGCTGAAAAGACTGGCTGTGCTGCTGGGAG
CCAAGTGCAGCGAGCGCATGCGTAGGCGACAGACGAATTATCTGATTGCT
GACGGTCGGAGCGAGGACAGTGAGAAGGTGCTCAAGGCACGGGAGTGGGG
CATCAAAGTGGTGACGCATGAGTGGCTGCTCGCTTGCGCACGGGCCGGGA
AGGTCGTTGGAGCTGAAGGGTATGCACTGGGAACGGAGGTGACGCCCACG
CGTTCACCCGCGTCGAAGACGGGCGCAGCGCACAGTGACTCGAAGACAAA
GGGCAGAGTCGAGATGCGGGACGCGGAGGCTATCAACCTGTTTCAGAAGC
TCACGGAGAAGTTTGACAGAGAGGCTGCGGAGGGCGGGGAGACAGCGGGT
GATGAAGGGGTGGAGGAGAATATTCGCTTCACTCGACGATCTAGGTCGAC
GAGTAGGGAGCATATGGATGACGAACGGTCTTGGAGCATGGATGCGAGTC
AGAGTCAGGTGATTGTGCACCGGGACCTGACACCGCCACCTTCGCCAACG
CAGCGTGTGAAACGCGCGCGACAGACGCTGTGA

protein sequence of Ggra8404.t1

>Ggra8404.t1 ID=Ggra8404.t1|Name=Ggra8404.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=761bp
MKGHLRGDKLRLLSDGAQVIARSLFVPSSQLSPGIVFVDARNAHFLSPAL
LPAIAARVTMSAAVRASLTSFQSGRKSSMLSRKRQRPPPLQGCSVCVTDF
GDDDTVHIAAQIRRMGGEFSDDLRPKTTHLVCESAGSLMHRAVCQRNSRA
GVKPIAIVRQSWLQSCETASMFINCSPHVLLPLAGMILCSTGFDRDERDD
ISKTAVSLGASYSKSLSAECTHLICRAPTGDKYNFAKEVPHMFIVRLPWL
EQCAKLNLLVDESRFTLDTEDAREATTCSGTEVPTSMATSSVTNSSHVKD
HASFTKWQHAAPANVLDAATLYLTESPLRDNDKHAPLRAKALRLANLGGA
SISSELTDFVNYIVVVRMPIAPSKIQLIREAQEHGTIATTLEWLEDCILQ
QKLLDTAKYQVPQLMEVPMAESSQPSSQAQIITSSTFLGLRVAVGPLAVR
DASTAYSVCSQLSSGRGKILAHDAAGYVTSGSPTHVLCGHNVTSRELEAI
KDAQSRNSRVLKVTQFWVDMCVKAEGLLPVSVCALFGPVPYETPLQDFTA
QKIMLSISGFQNSRERDWNRRREVLKRLAVLLGAKCSERMRRRQTNYLIA
DGRSEDSEKVLKAREWGIKVVTHEWLLACARAGKVVGAEGYALGTEVTPT
RSPASKTGAAHSDSKTKGRVEMRDAEAINLFQKLTEKFDREAAEGGETAG
DEGVEENIRFTRRSRSTSREHMDDERSWSMDASQSQVIVHRDLTPPPSPT
QRVKRARQTL*

mRNA from alignment at tig00000041_pilon:480733..483015+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8404.t1 ID=Ggra8404.t1|Name=Ggra8404.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2283bp|location=Sequence derived from alignment at tig00000041_pilon:480733..483015+ (Gracilaria gracilis GNS1m male)
ATGAAGGGTCACCTGCGGGGCGACAAACTGCGCCTCCTATCCGATGGGGC
CCAGGTCATCGCCCGCTCCCTGTTCGTTCCATCGTCGCAGCTCTCGCCCG
GCATCGTCTTTGTGGACGCCCGAAACGCACACTTTCTCTCGCCCGCTCTA
CTGCCAGCCATTGCTGCGCGAGTCACCATGAGCGCGGCTGTGCGCGCTTC
ACTCACTTCCTTTCAGAGCGGCCGCAAGTCATCTATGCTCTCCCGAAAGC
GCCAGCGACCGCCGCCTCTGCAGGGATGCAGTGTCTGCGTCACTGATTTT
GGAGACGATGATACTGTCCATATTGCGGCGCAGATTCGCCGGATGGGTGG
TGAATTCAGTGATGACTTGCGTCCAAAAACCACGCACTTGGTGTGTGAGA
GTGCTGGTTCTTTGATGCATCGCGCAGTCTGTCAACGAAACAGTAGAGCG
GGTGTCAAGCCTATCGCCATTGTTCGTCAGTCTTGGTTGCAAAGTTGTGA
GACCGCGTCCATGTTTATAAACTGCTCGCCTCACGTGCTGCTGCCGTTGG
CGGGCATGATTCTGTGTTCCACTGGCTTCGATCGCGATGAGAGGGATGAC
ATATCCAAGACCGCCGTTTCGCTTGGAGCTTCCTATTCCAAGTCTCTCTC
CGCAGAGTGCACCCATCTCATCTGCAGGGCTCCCACCGGTGACAAGTACA
ACTTTGCAAAGGAAGTTCCACACATGTTCATCGTGCGTTTACCATGGCTG
GAACAATGTGCGAAGCTCAACTTGCTTGTGGACGAGAGTCGTTTCACACT
GGATACGGAGGATGCACGAGAAGCAACCACTTGCTCTGGAACAGAGGTCC
CCACCAGCATGGCCACCAGTAGCGTTACCAACTCGTCGCACGTCAAAGAT
CATGCGTCCTTTACCAAGTGGCAGCATGCCGCCCCAGCCAATGTTTTGGA
CGCCGCCACTCTTTATCTCACTGAGAGCCCGCTTCGTGATAATGACAAGC
ACGCTCCGTTACGAGCAAAAGCGCTGCGGCTTGCGAATCTGGGTGGTGCG
TCCATTTCGAGTGAGCTAACAGACTTTGTCAACTATATTGTCGTTGTTCG
CATGCCTATCGCGCCGTCGAAGATACAGCTAATTCGCGAAGCACAAGAAC
ATGGTACAATCGCCACCACTCTCGAATGGCTTGAAGATTGCATCTTGCAA
CAAAAACTGTTGGACACTGCCAAGTATCAAGTACCGCAACTGATGGAGGT
TCCAATGGCAGAATCTTCACAGCCTAGCAGTCAGGCACAAATCATAACCT
CTTCTACGTTTCTTGGGTTGCGTGTGGCTGTAGGACCGCTCGCCGTTCGT
GATGCTTCAACAGCATACAGTGTCTGTTCGCAGCTGTCTTCAGGGCGCGG
GAAGATCCTCGCACATGACGCCGCGGGATACGTGACGAGCGGGAGCCCGA
CGCATGTGCTGTGTGGACACAATGTGACTTCGAGGGAACTGGAGGCTATC
AAAGATGCGCAAAGCAGAAACTCGAGGGTTCTGAAGGTGACGCAGTTTTG
GGTTGACATGTGTGTGAAGGCAGAGGGCTTGTTGCCAGTTTCTGTATGCG
CGTTATTCGGTCCAGTGCCTTACGAAACTCCGTTGCAGGACTTTACCGCG
CAGAAAATTATGTTATCAATCAGTGGTTTTCAAAACTCGCGCGAACGAGA
CTGGAATCGACGACGAGAGGTGCTGAAAAGACTGGCTGTGCTGCTGGGAG
CCAAGTGCAGCGAGCGCATGCGTAGGCGACAGACGAATTATCTGATTGCT
GACGGTCGGAGCGAGGACAGTGAGAAGGTGCTCAAGGCACGGGAGTGGGG
CATCAAAGTGGTGACGCATGAGTGGCTGCTCGCTTGCGCACGGGCCGGGA
AGGTCGTTGGAGCTGAAGGGTATGCACTGGGAACGGAGGTGACGCCCACG
CGTTCACCCGCGTCGAAGACGGGCGCAGCGCACAGTGACTCGAAGACAAA
GGGCAGAGTCGAGATGCGGGACGCGGAGGCTATCAACCTGTTTCAGAAGC
TCACGGAGAAGTTTGACAGAGAGGCTGCGGAGGGCGGGGAGACAGCGGGT
GATGAAGGGGTGGAGGAGAATATTCGCTTCACTCGACGATCTAGGTCGAC
GAGTAGGGAGCATATGGATGACGAACGGTCTTGGAGCATGGATGCGAGTC
AGAGTCAGGTGATTGTGCACCGGGACCTGACACCGCCACCTTCGCCAACG
CAGCGTGTGAAACGCGCGCGACAGACGCTGTGA

Coding sequence (CDS) from alignment at tig00000041_pilon:480733..483015+

>Ggra8404.t1 ID=Ggra8404.t1|Name=Ggra8404.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2283bp|location=Sequence derived from alignment at tig00000041_pilon:480733..483015+ (Gracilaria gracilis GNS1m male)
ATGAAGGGTCACCTGCGGGGCGACAAACTGCGCCTCCTATCCGATGGGGC
CCAGGTCATCGCCCGCTCCCTGTTCGTTCCATCGTCGCAGCTCTCGCCCG
GCATCGTCTTTGTGGACGCCCGAAACGCACACTTTCTCTCGCCCGCTCTA
CTGCCAGCCATTGCTGCGCGAGTCACCATGAGCGCGGCTGTGCGCGCTTC
ACTCACTTCCTTTCAGAGCGGCCGCAAGTCATCTATGCTCTCCCGAAAGC
GCCAGCGACCGCCGCCTCTGCAGGGATGCAGTGTCTGCGTCACTGATTTT
GGAGACGATGATACTGTCCATATTGCGGCGCAGATTCGCCGGATGGGTGG
TGAATTCAGTGATGACTTGCGTCCAAAAACCACGCACTTGGTGTGTGAGA
GTGCTGGTTCTTTGATGCATCGCGCAGTCTGTCAACGAAACAGTAGAGCG
GGTGTCAAGCCTATCGCCATTGTTCGTCAGTCTTGGTTGCAAAGTTGTGA
GACCGCGTCCATGTTTATAAACTGCTCGCCTCACGTGCTGCTGCCGTTGG
CGGGCATGATTCTGTGTTCCACTGGCTTCGATCGCGATGAGAGGGATGAC
ATATCCAAGACCGCCGTTTCGCTTGGAGCTTCCTATTCCAAGTCTCTCTC
CGCAGAGTGCACCCATCTCATCTGCAGGGCTCCCACCGGTGACAAGTACA
ACTTTGCAAAGGAAGTTCCACACATGTTCATCGTGCGTTTACCATGGCTG
GAACAATGTGCGAAGCTCAACTTGCTTGTGGACGAGAGTCGTTTCACACT
GGATACGGAGGATGCACGAGAAGCAACCACTTGCTCTGGAACAGAGGTCC
CCACCAGCATGGCCACCAGTAGCGTTACCAACTCGTCGCACGTCAAAGAT
CATGCGTCCTTTACCAAGTGGCAGCATGCCGCCCCAGCCAATGTTTTGGA
CGCCGCCACTCTTTATCTCACTGAGAGCCCGCTTCGTGATAATGACAAGC
ACGCTCCGTTACGAGCAAAAGCGCTGCGGCTTGCGAATCTGGGTGGTGCG
TCCATTTCGAGTGAGCTAACAGACTTTGTCAACTATATTGTCGTTGTTCG
CATGCCTATCGCGCCGTCGAAGATACAGCTAATTCGCGAAGCACAAGAAC
ATGGTACAATCGCCACCACTCTCGAATGGCTTGAAGATTGCATCTTGCAA
CAAAAACTGTTGGACACTGCCAAGTATCAAGTACCGCAACTGATGGAGGT
TCCAATGGCAGAATCTTCACAGCCTAGCAGTCAGGCACAAATCATAACCT
CTTCTACGTTTCTTGGGTTGCGTGTGGCTGTAGGACCGCTCGCCGTTCGT
GATGCTTCAACAGCATACAGTGTCTGTTCGCAGCTGTCTTCAGGGCGCGG
GAAGATCCTCGCACATGACGCCGCGGGATACGTGACGAGCGGGAGCCCGA
CGCATGTGCTGTGTGGACACAATGTGACTTCGAGGGAACTGGAGGCTATC
AAAGATGCGCAAAGCAGAAACTCGAGGGTTCTGAAGGTGACGCAGTTTTG
GGTTGACATGTGTGTGAAGGCAGAGGGCTTGTTGCCAGTTTCTGTATGCG
CGTTATTCGGTCCAGTGCCTTACGAAACTCCGTTGCAGGACTTTACCGCG
CAGAAAATTATGTTATCAATCAGTGGTTTTCAAAACTCGCGCGAACGAGA
CTGGAATCGACGACGAGAGGTGCTGAAAAGACTGGCTGTGCTGCTGGGAG
CCAAGTGCAGCGAGCGCATGCGTAGGCGACAGACGAATTATCTGATTGCT
GACGGTCGGAGCGAGGACAGTGAGAAGGTGCTCAAGGCACGGGAGTGGGG
CATCAAAGTGGTGACGCATGAGTGGCTGCTCGCTTGCGCACGGGCCGGGA
AGGTCGTTGGAGCTGAAGGGTATGCACTGGGAACGGAGGTGACGCCCACG
CGTTCACCCGCGTCGAAGACGGGCGCAGCGCACAGTGACTCGAAGACAAA
GGGCAGAGTCGAGATGCGGGACGCGGAGGCTATCAACCTGTTTCAGAAGC
TCACGGAGAAGTTTGACAGAGAGGCTGCGGAGGGCGGGGAGACAGCGGGT
GATGAAGGGGTGGAGGAGAATATTCGCTTCACTCGACGATCTAGGTCGAC
GAGTAGGGAGCATATGGATGACGAACGGTCTTGGAGCATGGATGCGAGTC
AGAGTCAGGTGATTGTGCACCGGGACCTGACACCGCCACCTTCGCCAACG
CAGCGTGTGAAACGCGCGCGACAGACGCTGTGA