Ggra8428.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8428.t1
Unique Name	Ggra8428.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	469

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:601182..602588 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173263.Syn7502_01409
PFAMs	HI0933_like
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K07007
Evalue	3.04e-107
EggNOG OGs	COG2081@1\|root,COG2081@2\|Bacteria,1FZZ1@1117\|Cyanobacteria,1GZ10@1129\|Synechococcus
Description	HI0933-like protein
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8428	Ggra8428	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 601182..602588 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8428.t1.stop1	Ggra8428.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 601182..601184 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8428.t1.CDS1	Ggra8428.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 601182..602588 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8428.t1.exon1	Ggra8428.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 601182..602588 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8428.t1.start1	Ggra8428.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 602586..602588 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8428.t1	Ggra8428.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 601182..602588 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:601182..602588-
coding sequence from alignment at tig00000041_pilon:601182..602588-

mRNA sequence

>Ggra8428.t1 ID=Ggra8428.t1|Name=Ggra8428.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=469bp
MTRMGVINHAFITHLPVSASPRRRRSCSQSLYASARSLGPEPAPLDQTRA
RVIVVGGGAAGHLAAISCARNCNAQVSILESSPSVLHKVRISGGGRCNVT
SANDAHDTHAFARHYPRGSREILSMLSRFGPKQVRAFFEAENVPLKVEQT
GKLFPTSDDSDTVVRALVEAAQKAGVSTTLRARVRDVQVLNGVYQLTMAA
GRQLEADYVVVATGSARTAYSWAQKLGHKVVDTVPSLFTFGVRDSRLHGL
AGVSVHDCRVQLIPKPKPKRPVPGLIQRGPVLITHWGLSGPAILSLSAFG
ARVLYEHGYQMACSIDWIPTLSFEAKLSKLKEARRTLAQKNVLNIHPFKG
QIPQRLWRGLLSTIPDIDASLKWASINNNSLNTLVDHLHSCSADISSKGQ
FKEEFVTAGGVALSEVSMKTFESKRSSRLFFVGETLDVDGKTGGYNLTFA
WASGYIAGLSIAAEIGRR*

spliced messenger RNA

>Ggra8428.t1 ID=Ggra8428.t1|Name=Ggra8428.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1407bp|location=Sequence derived from alignment at tig00000041_pilon:601182..602588- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCGTATGGGTGTCATCAACCACGCCTTCATAACACATCTCCCTGT
GTCGGCCAGCCCACGTCGGCGTCGCAGTTGCAGTCAAAGTCTTTACGCAT
CTGCACGAAGTCTTGGCCCTGAACCTGCCCCTCTAGATCAGACGCGCGCG
CGAGTTATTGTCGTGGGCGGCGGAGCTGCTGGTCATCTCGCTGCCATAAG
CTGTGCTCGGAACTGTAACGCCCAAGTCTCCATTCTCGAATCATCCCCTT
CCGTGTTGCACAAGGTACGAATCAGCGGTGGTGGTCGTTGCAATGTGACA
TCTGCTAATGATGCCCATGACACTCACGCATTTGCTCGTCACTATCCGCG
TGGTTCAAGGGAGATCTTGTCTATGCTGTCCCGCTTTGGGCCGAAACAAG
TCCGAGCCTTCTTCGAGGCGGAAAATGTGCCGCTCAAAGTGGAACAAACT
GGTAAACTTTTCCCAACCTCGGATGATTCGGACACTGTAGTGCGCGCACT
GGTCGAAGCGGCACAGAAAGCGGGCGTTAGTACGACGCTTCGTGCACGAG
TGCGTGATGTACAAGTTTTGAACGGCGTCTATCAGCTAACCATGGCGGCT
GGGCGACAGTTGGAAGCCGACTACGTTGTAGTTGCTACGGGCAGTGCTCG
GACTGCGTATTCTTGGGCACAGAAATTGGGCCATAAGGTGGTCGATACTG
TGCCAAGCTTATTTACCTTTGGAGTTAGAGATAGTCGTCTGCATGGTCTC
GCAGGCGTATCTGTTCATGATTGCCGGGTTCAATTGATTCCGAAGCCAAA
GCCAAAAAGACCCGTACCTGGGTTGATACAGCGTGGACCTGTTCTCATAA
CTCACTGGGGGCTCTCTGGTCCAGCCATTCTGTCGCTTTCTGCTTTTGGT
GCGCGTGTACTATATGAACATGGTTACCAGATGGCCTGCTCTATTGACTG
GATACCAACTTTGTCATTCGAGGCGAAGCTTAGCAAACTGAAAGAAGCCC
GGAGAACCCTCGCTCAGAAAAATGTGCTTAACATCCATCCCTTCAAAGGT
CAGATACCCCAGCGGTTATGGCGTGGACTGTTGAGCACAATACCAGATAT
AGATGCGTCTCTTAAATGGGCCAGTATCAACAATAATTCGTTAAATACTC
TGGTTGACCATCTGCATAGCTGTTCTGCTGATATCTCGAGCAAAGGCCAG
TTCAAGGAAGAATTTGTAACGGCCGGGGGAGTGGCTCTATCAGAAGTCAG
TATGAAAACCTTTGAGAGTAAGCGCTCGTCCAGACTTTTCTTTGTCGGGG
AAACATTAGACGTCGACGGAAAGACAGGTGGATACAACTTAACGTTTGCA
TGGGCTAGTGGGTACATAGCTGGGCTTTCTATAGCCGCTGAAATCGGAAG
ACGTTGA

protein sequence of Ggra8428.t1

>Ggra8428.t1 ID=Ggra8428.t1|Name=Ggra8428.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=469bp
MTRMGVINHAFITHLPVSASPRRRRSCSQSLYASARSLGPEPAPLDQTRA
RVIVVGGGAAGHLAAISCARNCNAQVSILESSPSVLHKVRISGGGRCNVT
SANDAHDTHAFARHYPRGSREILSMLSRFGPKQVRAFFEAENVPLKVEQT
GKLFPTSDDSDTVVRALVEAAQKAGVSTTLRARVRDVQVLNGVYQLTMAA
GRQLEADYVVVATGSARTAYSWAQKLGHKVVDTVPSLFTFGVRDSRLHGL
AGVSVHDCRVQLIPKPKPKRPVPGLIQRGPVLITHWGLSGPAILSLSAFG
ARVLYEHGYQMACSIDWIPTLSFEAKLSKLKEARRTLAQKNVLNIHPFKG
QIPQRLWRGLLSTIPDIDASLKWASINNNSLNTLVDHLHSCSADISSKGQ
FKEEFVTAGGVALSEVSMKTFESKRSSRLFFVGETLDVDGKTGGYNLTFA
WASGYIAGLSIAAEIGRR*

mRNA from alignment at tig00000041_pilon:601182..602588-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8428.t1 ID=Ggra8428.t1|Name=Ggra8428.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1407bp|location=Sequence derived from alignment at tig00000041_pilon:601182..602588- (Gracilaria gracilis GNS1m male)
ATGACGCGTATGGGTGTCATCAACCACGCCTTCATAACACATCTCCCTGT
GTCGGCCAGCCCACGTCGGCGTCGCAGTTGCAGTCAAAGTCTTTACGCAT
CTGCACGAAGTCTTGGCCCTGAACCTGCCCCTCTAGATCAGACGCGCGCG
CGAGTTATTGTCGTGGGCGGCGGAGCTGCTGGTCATCTCGCTGCCATAAG
CTGTGCTCGGAACTGTAACGCCCAAGTCTCCATTCTCGAATCATCCCCTT
CCGTGTTGCACAAGGTACGAATCAGCGGTGGTGGTCGTTGCAATGTGACA
TCTGCTAATGATGCCCATGACACTCACGCATTTGCTCGTCACTATCCGCG
TGGTTCAAGGGAGATCTTGTCTATGCTGTCCCGCTTTGGGCCGAAACAAG
TCCGAGCCTTCTTCGAGGCGGAAAATGTGCCGCTCAAAGTGGAACAAACT
GGTAAACTTTTCCCAACCTCGGATGATTCGGACACTGTAGTGCGCGCACT
GGTCGAAGCGGCACAGAAAGCGGGCGTTAGTACGACGCTTCGTGCACGAG
TGCGTGATGTACAAGTTTTGAACGGCGTCTATCAGCTAACCATGGCGGCT
GGGCGACAGTTGGAAGCCGACTACGTTGTAGTTGCTACGGGCAGTGCTCG
GACTGCGTATTCTTGGGCACAGAAATTGGGCCATAAGGTGGTCGATACTG
TGCCAAGCTTATTTACCTTTGGAGTTAGAGATAGTCGTCTGCATGGTCTC
GCAGGCGTATCTGTTCATGATTGCCGGGTTCAATTGATTCCGAAGCCAAA
GCCAAAAAGACCCGTACCTGGGTTGATACAGCGTGGACCTGTTCTCATAA
CTCACTGGGGGCTCTCTGGTCCAGCCATTCTGTCGCTTTCTGCTTTTGGT
GCGCGTGTACTATATGAACATGGTTACCAGATGGCCTGCTCTATTGACTG
GATACCAACTTTGTCATTCGAGGCGAAGCTTAGCAAACTGAAAGAAGCCC
GGAGAACCCTCGCTCAGAAAAATGTGCTTAACATCCATCCCTTCAAAGGT
CAGATACCCCAGCGGTTATGGCGTGGACTGTTGAGCACAATACCAGATAT
AGATGCGTCTCTTAAATGGGCCAGTATCAACAATAATTCGTTAAATACTC
TGGTTGACCATCTGCATAGCTGTTCTGCTGATATCTCGAGCAAAGGCCAG
TTCAAGGAAGAATTTGTAACGGCCGGGGGAGTGGCTCTATCAGAAGTCAG
TATGAAAACCTTTGAGAGTAAGCGCTCGTCCAGACTTTTCTTTGTCGGGG
AAACATTAGACGTCGACGGAAAGACAGGTGGATACAACTTAACGTTTGCA
TGGGCTAGTGGGTACATAGCTGGGCTTTCTATAGCCGCTGAAATCGGAAG
ACGTTGA

Coding sequence (CDS) from alignment at tig00000041_pilon:601182..602588-

>Ggra8428.t1 ID=Ggra8428.t1|Name=Ggra8428.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1407bp|location=Sequence derived from alignment at tig00000041_pilon:601182..602588- (Gracilaria gracilis GNS1m male)
ATGACGCGTATGGGTGTCATCAACCACGCCTTCATAACACATCTCCCTGT
GTCGGCCAGCCCACGTCGGCGTCGCAGTTGCAGTCAAAGTCTTTACGCAT
CTGCACGAAGTCTTGGCCCTGAACCTGCCCCTCTAGATCAGACGCGCGCG
CGAGTTATTGTCGTGGGCGGCGGAGCTGCTGGTCATCTCGCTGCCATAAG
CTGTGCTCGGAACTGTAACGCCCAAGTCTCCATTCTCGAATCATCCCCTT
CCGTGTTGCACAAGGTACGAATCAGCGGTGGTGGTCGTTGCAATGTGACA
TCTGCTAATGATGCCCATGACACTCACGCATTTGCTCGTCACTATCCGCG
TGGTTCAAGGGAGATCTTGTCTATGCTGTCCCGCTTTGGGCCGAAACAAG
TCCGAGCCTTCTTCGAGGCGGAAAATGTGCCGCTCAAAGTGGAACAAACT
GGTAAACTTTTCCCAACCTCGGATGATTCGGACACTGTAGTGCGCGCACT
GGTCGAAGCGGCACAGAAAGCGGGCGTTAGTACGACGCTTCGTGCACGAG
TGCGTGATGTACAAGTTTTGAACGGCGTCTATCAGCTAACCATGGCGGCT
GGGCGACAGTTGGAAGCCGACTACGTTGTAGTTGCTACGGGCAGTGCTCG
GACTGCGTATTCTTGGGCACAGAAATTGGGCCATAAGGTGGTCGATACTG
TGCCAAGCTTATTTACCTTTGGAGTTAGAGATAGTCGTCTGCATGGTCTC
GCAGGCGTATCTGTTCATGATTGCCGGGTTCAATTGATTCCGAAGCCAAA
GCCAAAAAGACCCGTACCTGGGTTGATACAGCGTGGACCTGTTCTCATAA
CTCACTGGGGGCTCTCTGGTCCAGCCATTCTGTCGCTTTCTGCTTTTGGT
GCGCGTGTACTATATGAACATGGTTACCAGATGGCCTGCTCTATTGACTG
GATACCAACTTTGTCATTCGAGGCGAAGCTTAGCAAACTGAAAGAAGCCC
GGAGAACCCTCGCTCAGAAAAATGTGCTTAACATCCATCCCTTCAAAGGT
CAGATACCCCAGCGGTTATGGCGTGGACTGTTGAGCACAATACCAGATAT
AGATGCGTCTCTTAAATGGGCCAGTATCAACAATAATTCGTTAAATACTC
TGGTTGACCATCTGCATAGCTGTTCTGCTGATATCTCGAGCAAAGGCCAG
TTCAAGGAAGAATTTGTAACGGCCGGGGGAGTGGCTCTATCAGAAGTCAG
TATGAAAACCTTTGAGAGTAAGCGCTCGTCCAGACTTTTCTTTGTCGGGG
AAACATTAGACGTCGACGGAAAGACAGGTGGATACAACTTAACGTTTGCA
TGGGCTAGTGGGTACATAGCTGGGCTTTCTATAGCCGCTGAAATCGGAAG
ACGTTGA