Ggra8406.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8406.t1
Unique NameGgra8406.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length1139
Homology
BLAST of Ggra8406.t1 vs. uniprot
Match: A0A2V3IKM2 (DNA topoisomerase 6 subunit B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKM2_9FLOR)

HSP 1 Score: 956 bits (2471), Expect = 0.000e+0
Identity = 499/672 (74.26%), Postives = 550/672 (81.85%), Query Frame = 0
Query:  470 LKFKSPAEFFAENKNIAGFDNAGKSLYTTIRELVENALDAAEAVHQLPRVSLLVQRIPPHRFRALVGMDAARERVDHSLYKDVENVKERRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTKPSRQLPNDVFRVTVQDNGCGMAHHDVPNMMGRVLAGTKYCVRQARGKFGLGSKMALIWAKMSTGLPVHITT-AQRGAPITECVLDIDITNNVPTVIKHTQTPNPKKWRGTIVAVTIDGNWSTYRSKILAYMRQMAVITPYAQFHFKFQSALHATGAKDFEAIFSRRTDHMPPSSREVKHHPSSVNQLILKQLIEQISPSTTLVRFLSSQFDAIPRTLAVRLINELGGDFTSHMTVKQLNLNHIRQIDALLHAVRFEKPSGSCLSPAGEYNLRLGITKELKPNLVATHAEPPDVFEGHPFIVEAGVALGGSGMKPGINIYRFANRIPLLFEAGNDVVTKTARDSIRWNNYKMSPTTDRIAVICSIVSTKIPFKGTGKEYIGDDSDAIKACVKRAISQCCLQLKTKLVRRAAQKDAAERKKTITKYAPDVANAIVGVFKELRDPEQSTREVVDKVQSGQITKDSLINKLIEHVQQIDKEQAIECASAAGRHNKQIETAFLARRSEQNAYLNIWH-----GTLNAKSVAAPSPPIRLSLLKSLQ 1135
            LKFKSPAEFFAENKNIAGFDN GKSLYTTIRELVENALDAAE++H LP VSL +QRIPPHRFR+++GMDAA  RVDHSLYK     ++                                         ++P R   N VFRVTVQDNGCGMAH DVPNMM RVLAGTKYCVRQARGKFGLGSKMALIWAKMSTGLP+ +TT A   APIT CVLDIDITNN PTVI HT++PNPK WRG+ V+VTI GNW+TYRSKILAYMRQMAVITPYAQFH  FQS + A  +KD EAIFSRRTDHMPP +REVKHHPSSVNQLILKQL+  + PSTTLV FLS+Q D+IPR+LAVRLINELG DFTSHMTV QL LNHIRQIDALLHA RF+KP+GSCLSPAGEYNLRLGITKELKP LVATHAEP DVFEGHPFIVEAGVALGGSGMKPGIN+YRFANRIPLLFEAGNDVVTKTARDSIRWNNYK+SPTTDRI VICSIVSTKIPFKGTGKEYIGDDSD IKA VKRAI+QCCLQLKTKLVRRAAQKDAAERKKTITKYAP VA A+V +F ++ + + STR+VVDKVQSG+ITK++L+NKL+EHVQQIDKEQAIE ASA GR +K+ E  +LA R+ Q AYLN+W      G  + K  A+ S  +RLSLLK+LQ
Sbjct:   42 LKFKSPAEFFAENKNIAGFDNPGKSLYTTIRELVENALDAAESIHNLPDVSLHIQRIPPHRFRSMLGMDAAPHRVDHSLYKRPPIPEQTTTKNSNLNNNINNPDSH-----------------------SRP-RHTANHVFRVTVQDNGCGMAHDDVPNMMARVLAGTKYCVRQARGKFGLGSKMALIWAKMSTGLPLCVTTSASPSAPITHCVLDIDITNNRPTVISHTKSPNPKTWRGSKVSVTIQGNWTTYRSKILAYMRQMAVITPYAQFHLIFQSNVDAADSKDLEAIFSRRTDHMPPPAREVKHHPSSVNQLILKQLLGLVKPSTTLVHFLSTQLDSIPRSLAVRLINELGPDFTSHMTVSQLQLNHIRQIDALLHAARFDKPNGSCLSPAGEYNLRLGITKELKPTLVATHAEPADVFEGHPFIVEAGVALGGSGMKPGINVYRFANRIPLLFEAGNDVVTKTARDSIRWNNYKISPTTDRIGVICSIVSTKIPFKGTGKEYIGDDSDVIKASVKRAITQCCLQLKTKLVRRAAQKDAAERKKTITKYAPGVAKALVDLFSQVDNADASTRDVVDKVQSGEITKETLLNKLLEHVQQIDKEQAIEYASATGRDHKKTEMVYLAPRAGQEAYLNLWQQRSTKGKHDDK--ASVSSTVRLSLLKALQ 687          
BLAST of Ggra8406.t1 vs. uniprot
Match: R7QF50 (Type II DNA topoisomerase VI subunit B n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QF50_CHOCR)

HSP 1 Score: 864 bits (2232), Expect = 1.390e-300
Identity = 457/688 (66.42%), Postives = 525/688 (76.31%), Query Frame = 0
Query:  470 LKFKSPAEFFAENKNIAGFDNAGKSLYTTIRELVENALDAAEAVHQLPRVSLLVQRIPPHRFRALVGMDAARERVDHSLYKDVENVKERRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------TTKPSRQLPNDVFRVTVQDNGCGMAHHDVPNMMGRVLAGTKYCVRQARGKFGLGSKMALIWAKMSTGLPVHITTAQRGAPITECVLDIDITNNVPTVIKHTQTPNPKKWRGTIVAVTIDGNWSTYRSKILAYMRQMAVITPYAQFHFKFQSALHATGAKDFEAIFSRRTDHMPPSSREVKHHPSSVNQLILKQLIEQISPSTTLVRFLSSQFDAIPRTLAVRLINELGGDFTSHMTVKQLNLNHIRQIDALLHAVRFEKPSGSCLSPAGEYNLRLGITKELKPNLVATHAEPPDVFEGHPFIVEAGVALGGSGMKPGINIYRFANRIPLLFEAGNDVVTKTARDSIRWNNYKMSPTTDRIAVICSIVSTKIPFKGTGKEYIGDDSDAIKACVKRAISQCCLQLKTKLVRRAAQKDAAERKKTITKYAPDVANAIVGVFKELRDPEQSTREVVDKVQSGQITKDSLINKLIEHVQQIDKEQAIECASAAGRHNKQIETAFLARRSEQNAYLNIWHGTLNAKSVAAPS-----PPIRLSLLKSLQ 1135
            LKFKSPAEFFAENKNIAGFDN GKSLYTTIRELVEN LDAAEA+  LP + + V RI   +FR +VGMD  R RVD SLYKDVE+VKER+A  XXXXXXXX                                            ++K  +   ND+F VTV DNG GMAH DVPNMMGRVLAGTKYCVRQ RGKFGLGSKMALIW+KMSTGLPV I TA+ G+ +T C+LDIDI  N+P VI+ ++  NP  WRG+ V+VTI+GNWSTYR+KIL Y+RQMAVITPYAQF   F S      +KDFE +FSRRTD MP ++ EVKHHPSSVNQL+LKQLI  +    +LVRFL++QF AIPR+LA RLI ELG  FT HMTV +L LN+IRQIDALLHA RFE P G CLSPAGEYNLRLGITKELKP++VATHAEP DVFEGHPFIVEAGVALGG+GMKPG+NI+RFANRIPLLFEAGNDVVT+TARD IRWN+YK+SP TDRI VICSIVSTK+PFKGTGKEYIGDDSD+IK CVKRAI+QCCLQLKTKLVR+AAQKDAA+RK  ITKYAPDVANA+V +F+EL DP++ T++V D V +G+I++D L+ KL +HVQQ DKEQAIE A+A GR +K +ET F+ARRSEQ  Y  IW     A S    S     P +R SLL SLQ
Sbjct:   52 LKFKSPAEFFAENKNIAGFDNPGKSLYTTIRELVENGLDAAEAIGTLPDIEIFVARIDKQQFRTMVGMDGNRNRVDASLYKDVESVKERKAREXXXXXXXXRTKSKDGSLSASGSGQLQTDNDDANDSKELTLESTQEASQPSQTSSKKGKSGGNDIFCVTVTDNGSGMAHDDVPNMMGRVLAGTKYCVRQTRGKFGLGSKMALIWSKMSTGLPVRINTAKAGSEVTNCILDIDIARNIPNVIELSRKENPSGWRGSKVSVTIEGNWSTYRAKILLYVRQMAVITPYAQFRLTFSSGYDNADSKDFELVFSRRTDKMPRTAAEVKHHPSSVNQLLLKQLIGDVKEDMSLVRFLTTQFVAIPRSLATRLITELGKGFTQHMTVGELTLNNIRQIDALLHAARFENPDGLCLSPAGEYNLRLGITKELKPSMVATHAEPADVFEGHPFIVEAGVALGGTGMKPGLNIFRFANRIPLLFEAGNDVVTRTARDGIRWNSYKISPNTDRIGVICSIVSTKVPFKGTGKEYIGDDSDSIKLCVKRAITQCCLQLKTKLVRQAAQKDAAQRKMLITKYAPDVANAVVALFEELEDPDRETKDVSDSVLNGKISRDILLAKLQDHVQQFDKEQAIEYATAHGRDHKTLETVFIARRSEQINYSPIWLEQPRATSTPEGSQQESAPVVRFSLLSSLQ 739          
BLAST of Ggra8406.t1 vs. uniprot
Match: A0A1Y1I7R1 (DNA topoisomerase 6 subunit B n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I7R1_KLENI)

HSP 1 Score: 614 bits (1584), Expect = 3.250e-204
Identity = 339/658 (51.52%), Postives = 447/658 (67.93%), Query Frame = 0
Query:  464 GAEQQHLKFKSPAEFFAENKNIAGFDNAGKSLYTTIRELVENALDAAEAVHQLPRVSLLVQRIPPHRFRALVGMDAARERVDHSLYKDVEN--VKERRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTKPSRQLPNDVFRVTVQDNGCGMAHHDVPNMMGRVLAGTKYCVRQARGKFGLGSKMALIWAKMSTGLPVHITTAQRGAPI-TECVLDIDITNNVPTVIKHTQTPNPKKWRGTIVAVTIDGNWSTYRSKILAYMRQMAVITPYAQFHFKFQSALHATGAKDFEAIFSRRTDHMPPSSREVKHHPSSVNQLILKQLIEQISPSTTLVRFLSSQFDAIPRTLAVRLINELGGDFTSHMTVKQLNLNHIRQIDALLHAVRFEKPSGSCLSPAGEYNLRLGITKELKPNLVATHAEPPDVFEGHPFIVEAGVALGGSGMKPGINIYRFANRIPLLFEAGNDVVTKTARDSIRWNNYKMSPTTDRIAVICSIVSTKIPFKGTGKEYIGDDSDAIKACVKRAISQCCLQLKTKLVRRAAQKDAAERKKTITKYAPDVANAIVGVFKELRDPEQSTREV-------VDKVQSGQITKDSLINKLIEHVQQIDKEQAIECASAAGRHNKQIETAFLARRSEQNAYLNIWH 1111
            G +   LK KSPAEFF+ENKNIAGFDN GKSLYTT+RELVENALD+AE++ +LP + + ++ I   RF AL+G+   ++RVD  LY D E   +KE+R            XXXXXXXXXXXXX                         +RVTV+DNG GM H D+PNM+GRVL+GTKY +RQ RGKFGLG+KMALIW+KMSTGLP+ I +A +G P  T C LDIDI  N+P + KH + PNP++WRG  + V I+GNW+TY+SKI+ YMRQMAVITPYA+F F+F S    T  K+    F+RRTD MP + +E K+HPS+V+ L++K+LI + S  T L +FL ++FD + + LA RLI E+G DF S M V+ L    + +I  L    +F  PSG CLSPAGEYN+RLGI K+L P++VAT+     VFEGHPFIVEAG++LGG  +KPGIN++RFANRIPLLFEAG DV+T+TA   I W +YK++ TTD+I V  SIVSTKIPFKGTGKEYIGDD   I A VK+A+ QCCLQLK+K+VR+   ++  +RK+ + +Y PDV  A+  V   + D ++   E+       ++KV S ++T+++L  KL +HV+Q+D E A+E A+  G+     ET FL     + A+L   H
Sbjct:   24 GKKHPVLKQKSPAEFFSENKNIAGFDNPGKSLYTTVRELVENALDSAESIAELPEIEVTIEEIEKSRFHALIGL-VDQDRVDEELYGDFETDKLKEKRLAREAKEQERLAXXXXXXXXXXXXXGKGKGDA----------------SFYRVTVKDNGKGMPHDDIPNMLGRVLSGTKYGLRQTRGKFGLGAKMALIWSKMSTGLPIDIRSAMKGHPFCTFCRLDIDIHKNLPNIHKHEKEPNPQRWRGAELQVVIEGNWTTYKSKIVNYMRQMAVITPYAEFVFRFIST---TPDKNISIHFARRTDVMPAAPQEAKYHPSAVDLLLIKRLIAETSKQT-LSQFLVAEFDTVKKPLAERLIGEMGPDFASKMAVRSLTDQQVARIHQLFRQAKFADPSGDCLSPAGEYNMRLGIMKDLHPDMVATYQGSTQVFEGHPFIVEAGLSLGGKDVKPGINVFRFANRIPLLFEAGGDVITRTASKRINWASYKINQTTDKIGVFVSIVSTKIPFKGTGKEYIGDDIPEIAAAVKQALQQCCLQLKSKIVRQQQARERQQRKRNLARYIPDVTRAVFEVLDTIADSKRRRTELPPGDAALLEKVVSEEVTEETLRQKLTQHVEQVDNEMALEYAAQTGKVETAPETIFLRALDSKRAFLPDLH 660          
BLAST of Ggra8406.t1 vs. uniprot
Match: DNA topoisomerase 6 subunit B isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C3E1E (DNA topoisomerase 6 subunit B isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C3E1E)

HSP 1 Score: 602 bits (1552), Expect = 1.830e-199
Identity = 325/654 (49.69%), Postives = 429/654 (65.60%), Query Frame = 0
Query:  465 AEQQHLKFKSPAEFFAENKNIAGFDNAGKSLYTTIRELVENALDAAEAVHQLPRVSLLVQRIPPHRFRALVGMDAARERVDHSLYKDVENVKERRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTKPSRQLPNDVFRVTVQDNGCGMAHHDVPNMMGRVLAGTKYCVRQARGKFGLGSKMALIWAKMSTGLPVHITTAQRGAP-ITECVLDIDITNNVPTVIKHTQTPNPKKWRGTIVAVTIDGNWSTYRSKILAYMRQMAVITPYAQFHFKFQSALHATGAKDFEAIFSRRTDHMPPSSREVKHHPSSVNQLILKQLIEQISPSTTLVRFLSSQFDAIPRTLAVRLINELGGDFTSHMTVKQLNLNHIRQIDALLHAVRFEKPSGSCLSPAGEYNLRLGITKELKPNLVATHAEPPDVFEGHPFIVEAGVALGGSGMKPGINIYRFANRIPLLFEAGNDVVTKTARDSIRWNNYKMSPTTDRIAVICSIVSTKIPFKGTGKEYIGDDSDAIKACVKRAISQCCLQLKTKLVRRAAQKDAAERKKTITKYAPDVANAIVGVFKELRDPEQSTRE---------VVDKVQSGQITKDSLINKLIEHVQQIDKEQAIECASAAGRHNKQIETAFLARRSEQNAYLN 1108
            ++  +LK KSPAEFFAENKNIAGFDN GKSLYTT+RELVENALD+AE++ QLP V + ++ I   +F +++G+   RERVD  LY D E VK R                                       +           ++VT +DNG GM H D+PNM GRVL+GTKY ++Q RGKFGLG+KMALIW+KMSTGLP+ I+++ +G   +T C LDIDI  N+P V  H +  N ++W G  + V I+GNW+TYRSKIL YMRQMAVITPYAQF F+F S    T  K+    F+RRTD MPP   E KHHPSSV+ L++K+LI   S  T L++FL ++F  I ++LA RLI E+G DF+ +M VK L    + +I  L    +F+ PSG CLSPAGEYNLRLG+ KEL P++VAT++    VFEGHPFIVEAGV+LGG  +K GINI+RFANRIPLLFE G DVVT+TA   I W+ YK++ T D+I V  SIVSTKIPFKGTGKEYIGDD   I   VK AI QCC QLK+K+V+R   ++  ERK+ +++Y PDV+ A+  V KE+   E +T++         V++KV    ITK++L  KL +HV+Q+D E A+E A+ +G   +  E  ++ +   +N +++
Sbjct:   21 SKDSNLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSAESISQLPEVEITIEEIGKSKFNSMIGL-VDRERVDEKLYDDYETVKAREKRLAKEARAQEIQAKNAASGKKVKEPAVSKVLKGRGEAS----------YYKVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMKGQSYVTFCRLDIDIHRNIPHVHLHEKKGNTERWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFISD---TPEKNITIKFARRTDVMPPVPVETKHHPSSVDLLLIKRLIADTSKKT-LLQFLQNEFVNINKSLAARLIGEMGPDFSPNMAVKSLTSQQMVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGVIKELHPDMVATYSGSAQVFEGHPFIVEAGVSLGGKDVKQGINIFRFANRIPLLFEQGGDVVTRTALKRINWSTYKINQTQDKIGVFISIVSTKIPFKGTGKEYIGDDISEIATAVKSAIQQCCNQLKSKIVKRIQAREQQERKRNLSRYIPDVSGAVYDVLKEM-SREHATKKKRYSGEDALVLEKVSERLITKETLQEKLAKHVEQVDYEMALEYATQSGVSEEPREDIYIQQLDPKNHFVD 658          
BLAST of Ggra8406.t1 vs. uniprot
Match: A0A199UVR2 (DNA topoisomerase 6 subunit B n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199UVR2_ANACO)

HSP 1 Score: 600 bits (1547), Expect = 1.340e-198
Identity = 324/654 (49.54%), Postives = 427/654 (65.29%), Query Frame = 0
Query:  465 AEQQHLKFKSPAEFFAENKNIAGFDNAGKSLYTTIRELVENALDAAEAVHQLPRVSLLVQRIPPHRFRALVGMDAARERVDHSLYKDVENVKERRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTKPSRQLPNDVF-RVTVQDNGCGMAHHDVPNMMGRVLAGTKYCVRQARGKFGLGSKMALIWAKMSTGLPVHITTAQRGAP-ITECVLDIDITNNVPTVIKHTQTPNPKKWRGTIVAVTIDGNWSTYRSKILAYMRQMAVITPYAQFHFKFQSALHATGAKDFEAIFSRRTDHMPPSSREVKHHPSSVNQLILKQLIEQISPSTTLVRFLSSQFDAIPRTLAVRLINELGGDFTSHMTVKQLNLNHIRQIDALLHAVRFEKPSGSCLSPAGEYNLRLGITKELKPNLVATHAEPPDVFEGHPFIVEAGVALGGSGMKPGINIYRFANRIPLLFEAGNDVVTKTARDSIRWNNYKMSPTTDRIAVICSIVSTKIPFKGTGKEYIGDDSDAIKACVKRAISQCCLQLKTKLVRRAAQKDAAERKKTITKYAPDVANAIVGVFKELRDPEQSTR--------EVVDKVQSGQITKDSLINKLIEHVQQIDKEQAIECASAAGRHNKQIETAFLARRSEQNAYLN 1108
            A++  LK KSPAEFFAENKNIAGFDN GKSLYTT+RELVEN+LD+AE++ +LP + + ++ I   +F  ++G+   RERVD  LY D E+ K R                                       T K ++      F RVT +DNG GM H D+PNM GRVL+GTKY ++Q RGKFGLG+KMALIW+KMSTGLP+ IT++ +G   ++ C LDIDI  N+P V  H +  N  +W G  + V I+GNW+T+RSKIL YMRQMAVITPYAQF FKF S    T  K     F+RRTD MPP   E KHHPS+V+ L++K+L+ + S    L++FL  +F  I ++ A RLI E+G DF+S M VK L    I +I  L    +F+ PSG CLSPAGEYNLRLGI KEL+P+LVAT+A  P VFEGHPFIVEAG++LGG  +K G+NI+RFANRIPLLFE G DV+T+TA   I WN+YK++   D+I V  SIVSTKIPFKGTGKEYIGDD   I + VK AI QCCLQLK+K+V+R   ++  ERK+ + +Y PD + A++ V +++    +S R        E++DKV S +IT+ +L   L +HV+Q+D E A+E A+ +G   +  E  +L      + Y++
Sbjct:   29 AKESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVIEIAIEEINKSKFNTMIGL-VDRERVDEELYDDFESAKAREKRLAKEARVQEIQAKNIALGKKFKEPS-----------TAKGAKSRGEAAFFRVTCKDNGRGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEITSSMKGQNYVSYCRLDIDIHKNIPHVHAHEKRENKDRWHGAEIQVIIEGNWTTHRSKILHYMRQMAVITPYAQFLFKFISD---TAEKTVTVRFARRTDVMPPVPLETKHHPSAVDLLLIKRLVAETSKQN-LLQFLQHEFVNIRKSYAERLIGEMGPDFSSKMPVKSLTSQQIVRIQQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELQPDLVATYAGSPQVFEGHPFIVEAGISLGGKDVKQGLNIFRFANRIPLLFEQGADVITRTALKRINWNSYKINQMQDKIGVFVSIVSTKIPFKGTGKEYIGDDITEISSAVKSAIQQCCLQLKSKIVKRLQARERQERKRNLNRYIPDASRAVMEVLEQMAHNRESKRQRYDKEDEELLDKVASEEITEKTLKECLTQHVEQVDYEMALEYATQSGVSEEPREAIYLNSLEGSHNYID 666          
BLAST of Ggra8406.t1 vs. uniprot
Match: A0A0K9P2W3 (DNA topoisomerase 6 subunit B n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P2W3_ZOSMR)

HSP 1 Score: 598 bits (1541), Expect = 1.050e-197
Identity = 325/666 (48.80%), Postives = 435/666 (65.32%), Query Frame = 0
Query:  463 SGAEQQHLKFKSPAEFFAENKNIAGFDNAGKSLYTTIRELVENALDAAEAVHQLPRVSLLVQRIPPHRFRALVGMDAARERVDHSLYKDVENVKERRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTKPSRQLPN-------DVFRVTVQDNGCGMAHHDVPNMMGRVLAGTKYCVRQARGKFGLGSKMALIWAKMSTGLPVHITTAQRGAP-ITECVLDIDITNNVPTVIKHTQTPNPKKWRGTIVAVTIDGNWSTYRSKILAYMRQMAVITPYAQFHFKFQSALHATGAKDFEAIFSRRTDHMPPSSREVKHHPSSVNQLILKQLIEQISPSTTLVRFLSSQFDAIPRTLAVRLINELGGDFTSHMTVKQLNLNHIRQIDALLHAVRFEKPSGSCLSPAGEYNLRLGITKELKPNLVATHAEPPDVFEGHPFIVEAGVALGGSGMKPGINIYRFANRIPLLFEAGNDVVTKTARDSIRWNNYKMSPTTDRIAVICSIVSTKIPFKGTGKEYIGDDSDAIKACVKRAISQCCLQLKTKLVRRAAQKDAAERKKTITKYAPDVANAIVGVFKELRDPEQSTR-------EVVDKVQSGQITKDSLINKLIEHVQQIDKEQAIECASAAGRHNKQIETAFLARRSEQNAYLNIWHGT 1113
            S  ++  LK KSPAEFFAENKNIAGFDN GKSLYTT+RELVENALD+AE++ +LP + + ++ I   +F  ++G+   RERVD  LY D E+VK R                                        TK  +QL           FRVT +DNG GM H+D+PNM+GRVL+GTKY ++Q RGKFGLG+KMALIW+KMSTGLP+ I+++      ++ C LDIDI  N+P +  H +  N + W G  + V I+GNW+TYRSKIL YMRQMAVITPYAQF F F S +     K+    FSRRTD MPP   E K+HPS+V+ L++K+LI + +    L++FL  +F  I ++ A RLI E+G DF+S MTVK L+   + +I  L    +F+ P+G CLSPAGEYNLRLGITKEL P++VAT++  P VFEGHPFIVEAG++LGG  +K G+NI+RFANRIPLLFE G DVVT+TA+  I WN+YK++ T D+I V  SIVSTKIPFKGTGKEYIGDD   I + VK AI QCCLQLK+K+V++   ++  ERK+ +T+Y PD + AI  + KE     +  R       E+++KV + +IT+ +  +KLI+H +Q+D E A++ A+  G   +  E  ++    E   +L+ +HGT
Sbjct:   28 SKVKESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSAESISELPVIEVTIEEITKSKFNTMIGL-VDRERVDEELYDDFESVKVREKRLLKEARVQEMNTKNAASGKK-----------------TKEPQQLKTIKGRGDTSFFRVTCKDNGRGMPHNDIPNMLGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMIDQNYVSFCKLDIDIHRNIPHIHLHEKRDNTEDWHGAEIQVIIEGNWTTYRSKILHYMRQMAVITPYAQFVFSFISDMQD---KNVTVQFSRRTDVMPPIPPETKYHPSAVDLLLIKRLIAETTKQN-LLQFLQHEFVNIGKSYAQRLIEEMGADFSSKMTVKSLSSQQLVRIHQLFRQAKFDDPNGVCLSPAGEYNLRLGITKELHPDMVATYSGSPQVFEGHPFIVEAGISLGGKDVKQGLNIFRFANRIPLLFERGADVVTRTAQKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDISEISSAVKVAIKQCCLQLKSKIVKKIQARERQERKRNLTRYVPDASRAIHDMLKETDLDAKRKRPLPDDYIEILNKVSTNEITEATFRDKLIQHAEQVDYEMALDYATQTGIIEEPREDIYIKPYEENRKFLD-FHGT 670          
BLAST of Ggra8406.t1 vs. uniprot
Match: DNA topoisomerase 6 subunit B n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CFB766A (DNA topoisomerase 6 subunit B n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CFB766A)

HSP 1 Score: 597 bits (1540), Expect = 1.170e-197
Identity = 324/655 (49.47%), Postives = 427/655 (65.19%), Query Frame = 0
Query:  466 EQQHLKFKSPAEFFAENKNIAGFDNAGKSLYTTIRELVENALDAAEAVHQLPRVSLLVQRIPPHRFRALVGMDAARERVDHSLYKDVENVKERRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTKPSR-QLPNDVFRVTVQDNGCGMAHHDVPNMMGRVLAGTKYCVRQARGKFGLGSKMALIWAKMSTGLPVHITTAQRGAP-ITECVLDIDITNNVPTVIKHTQTPNPKKWRGTIVAVTIDGNWSTYRSKILAYMRQMAVITPYAQFHFKFQSALHATGAKDFEAIFSRRTDHMPPSSREVKHHPSSVNQLILKQLIEQISPSTTLVRFLSSQFDAIPRTLAVRLINELGGDFTSHMTVKQLNLNHIRQIDALLHAVRFEKPSGSCLSPAGEYNLRLGITKELKPNLVATHAEPPDVFEGHPFIVEAGVALGGSGMKPGINIYRFANRIPLLFEAGNDVVTKTARDSIRWNNYKMSPTTDRIAVICSIVSTKIPFKGTGKEYIGDDSDAIKACVKRAISQCCLQLKTKLVRRAAQKDAAERKKTITKYAPDVANAIVGVFKEL---------RDPEQSTREVVDKVQSGQITKDSLINKLIEHVQQIDKEQAIECASAAGRHNKQIETAFLARRSEQNAYLNI 1109
            E   L+ KSPAEFFA+NKNIAGFDN GKSLYTT+RELVEN+LD+AE++ +LP + + ++ I   ++ A++G+ +  ERVD +LY+D E  K R                                       +TK  + +    +FRVT +DNG GM H D+PNM GRVL+GTKY ++Q RGKFGLG+KMALIW+KMSTGLP+ I+++ +G   ++ C LDIDI  N+P + KH +  N  +W G  V + I+GNW+TYRSKIL YMRQMAVITPYA+F FK+      +  ++    FSRRTD MPP   E KHHPSSV+ L++K+LI + S    L++FL  +F  I ++LA RLI E+G  F+  M VK L    I +I+ L    +F+ PSG CLSPAGEYNLRLGI KEL P+LVAT++    VFEGHPFIVEAGV+LGG  +K G+NI+RFANRIPLLFE G DVVT+TA   I W NYK++ T D+I V  SIVSTKIPFKGTGKEYIGDD   I A VK AI QCC QLK+K+VR+   ++  ERK+ ++KY PD A AI  V KE+         R  EQ T +++ KV S  +TK++L   L +HV+++D E A+E A+ +G   +  ET +L        Y ++
Sbjct:   20 EYSALQQKSPAEFFADNKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVIEVTIEEIGKAQYYAMIGL-SNHERVDEALYEDYETAKSREKRLRKEFLKKERDAMNAAFGKKVQETA-----------STKAMKGRGETSIFRVTCKDNGRGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIVISSSMKGQDFVSYCKLDIDIRRNIPNIHKHEKRDNKYRWHGAEVQLIIEGNWTTYRSKILHYMRQMAVITPYAEFLFKYVPDQDVSDKQNITIRFSRRTDAMPPVPVETKHHPSSVDLLLIKRLIAETSKQN-LLQFLQHEFVNIGKSLAERLIGEMGPGFSPKMAVKSLTSEQIVRINQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELNPDLVATYSGSAQVFEGHPFIVEAGVSLGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTALKRINWTNYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDISEIAAAVKTAIQQCCNQLKSKIVRKIQAREQQERKRNLSKYIPDAAGAIYNVLKEMSQFQASKKQRYEEQDT-DLLKKVYSRTVTKETLTQMLAQHVEKVDYEMAMEYATQSGVTEEPRETIYLPALETDGNYTDL 660          
BLAST of Ggra8406.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: DNA topoisomerase 6 subunit B n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929AE2F (LOW QUALITY PROTEIN: DNA topoisomerase 6 subunit B n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929AE2F)

HSP 1 Score: 597 bits (1540), Expect = 1.380e-197
Identity = 322/675 (47.70%), Postives = 433/675 (64.15%), Query Frame = 0
Query:  465 AEQQHLKFKSPAEFFAENKNIAGFDNAGKSLYTTIRELVENALDAAEAVHQLPRVSLLVQRIPPHRFRALVGMDAARERVDHSLYKDVENVKERRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTKPSRQLPNDVFRVTVQDNGCGMAHHDVPNMMGRVLAGTKYCVRQARGKFGLGSKMALIWAKMSTGLPVHITTAQRGAPITE-CVLDIDITNNVPTVIKHTQTPNPKKWRGTIVAVTIDGNWSTYRSKILAYMRQMAVITPYAQFHFKFQSALHATGAKDFEAIFSRRTDHMPPSSREVKHHPSSVNQLILKQLIEQISPSTTLVRFLSSQFDAIPRTLAVRLINELGGDFTSHMTVKQLNLNHIRQIDALLHAVRFEKPSGSCLSPAGEYNLRLGITKELKPNLVATHAEPPDVFEGHPFIVEAGVALGGSGMKPGINIYRFANRIPLLFEAGNDVVTKTARDSIRWNNYKMSPTTDRIAVICSIVSTKIPFKGTGKEYIGDDSDAIKACVKRAISQCCLQLKTKLVRRAAQKDAAERKKTITKYAPDVANAIVGVFKELRDPEQSTR--------EVVDKVQSGQITKDSLINKLIEHVQQIDKEQAIECASAAGRHNKQIETAFLARRSEQNAYLNIWHGTLNAKSVAAPSPPIRLSL 1130
            A++  LK KSPAEFFAENKNIAGFDN GKSLYTT+RELVEN+LD+AE++ +LP + + ++ I   +F  ++G+   RERVD  LY D E+ K R                                       +           +RVT +DNG GM H ++PNM GRVL+GTKY ++Q RGKFGLG+KMALIW+KMSTGLP+ I ++ RG      C LDIDI  N+P V  H +  N  KW G  + V I+GNW+TYRSKIL YMRQMAVITPYAQF FKF S +   G K+   +F+RRTD MP    E KHHPS+V+ L++K+LI + S    L++FL  +F  I +T A RLI E+G DF+  M+VK L    I +I  L    +F+ PSG CLSPAGEYNLRLGI KEL+P++VAT+A  P +FEGHPFIVEAG++LGG  +K G+N++RFANRIPLLFE G DVVT+TA   I W++YK++   D+I V  SIVSTKIPFKGTGKEYIGDD   I   VK AI QCC+QLK+K+V++   ++  ERK+ +T+Y PD +NAI  + +++   +++ R        E+++KV S +IT+ SL ++L +HV+Q+D E A+E A+ +G          ++    ++ Y+N   G+ N     +P    RL +
Sbjct:   27 AKESSLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVIEITIEEISKSKFNMMIGL-IDRERVDEELYDDFESAKAREKRLAKEARIQETQAKKAALGKKMKEPASVKGVKGRGEAS----------FYRVTCKDNGRGMPHDEIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEIASSMRGQNFKSFCKLDIDIHKNIPHVHLHEKRENKDKWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFISDM---GEKNVTVLFARRTDVMPSVPLETKHHPSAVDLLLIKRLISETSKQN-LLQFLQHEFVKISKTFAERLIGEMGPDFSPTMSVKSLTSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELQPDMVATYAGSPQIFEGHPFIVEAGISLGGKDVKQGLNVFRFANRIPLLFEQGADVVTRTALKRINWSSYKINLMQDKIGVFVSIVSTKIPFKGTGKEYIGDDITEISFAVKTAIQQCCVQLKSKIVKKLQARERQERKRNLTRYIPDASNAIYDILEKISQNKETKRHCYEAEDNELLEKVSSQEITEISLRDRLTQHVEQVDYEMALEYAAQSG----------VSEEPREDIYVNSLDGSHNYIDFQSPIFVFRLCI 676          
BLAST of Ggra8406.t1 vs. uniprot
Match: A0A200Q874 (DNA topoisomerase 6 subunit B n=2 Tax=Papaveroideae TaxID=1462614 RepID=A0A200Q874_9MAGN)

HSP 1 Score: 597 bits (1538), Expect = 2.580e-197
Identity = 318/631 (50.40%), Postives = 419/631 (66.40%), Query Frame = 0
Query:  465 AEQQHLKFKSPAEFFAENKNIAGFDNAGKSLYTTIRELVENALDAAEAVHQLPRVSLLVQRIPPHRFRALVGMDAARERVDHSLYKDVENVKERRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTKPSRQLPNDVFRVTVQDNGCGMAHHDVPNMMGRVLAGTKYCVRQARGKFGLGSKMALIWAKMSTGLPVHITTAQRGAP-ITECVLDIDITNNVPTVIKHTQTPNPKKWRGTIVAVTIDGNWSTYRSKILAYMRQMAVITPYAQFHFKFQSALHATGAKDFEAIFSRRTDHMPPSSREVKHHPSSVNQLILKQLIEQISPSTTLVRFLSSQFDAIPRTLAVRLINELGGDFTSHMTVKQLNLNHIRQIDALLHAVRFEKPSGSCLSPAGEYNLRLGITKELKPNLVATHAEPPDVFEGHPFIVEAGVALGGSGMKPGINIYRFANRIPLLFEAGNDVVTKTARDSIRWNNYKMSPTTDRIAVICSIVSTKIPFKGTGKEYIGDDSDAIKACVKRAISQCCLQLKTKLVRRAAQKDAAERKKTITKYAPDVANAIVGVFKELRDPEQSTR--------EVVDKVQSGQITKDSLINKLIEHVQQIDKEQAIECASAAG 1086
            A++  LK KSPAEFFAENKNIAGFDN GKSLYTT+RELVEN+LD+AE++ +LP + + ++ I   +F +++G+   RERVD +LY D E VK R                                       +           FRVT +DNG GMAH D+PNM GRVL+GTKY ++Q RGKFGLG+KMALIW+KMSTGLP+ I+++ RG   ++ C LDIDI  N+P +  H +  N ++W G  + V I+GNW+TYRSKIL YMRQMAVITPYAQF FKF S +     K+    F+RRTD MPP   E KHHPS+V+ L++K+LI + S  T L++FL  +F  I ++ A RLI E+G DF+  M VK L    I +I  L    +F+ PSG CLSPAGEYNLRLGI KEL P++VAT++  P VFEGHPFIVEAG++LGG  +K G+NI+RFANRIPLLFE G DVVT+TA   I WNNYK++ T D+I V  SIVSTKIPFKGTGKEYIGDD   I + VK +I QCC+QLK+K++++   ++  ERK+ ++KY PD   AI  V +E+     S +        E++ +V +  ITK +L +KL +HV+Q+D E A++ A+ +G
Sbjct:   25 AKESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPIIEVTIEEIGKSKFNSMIGL-VDRERVDEALYDDFETVKAREKRLAKEARDQENQAKNAALGKKVKEPAPLKGIKGRGEAS----------FFRVTCKDNGKGMAHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRGQNYVSFCRLDIDIHRNIPHIHLHEKRDNKERWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSDV---ADKNVTIRFARRTDVMPPVPIETKHHPSAVDLLLIKRLITETSKQT-LLQFLQHEFVNIGKSFAERLIGEMGPDFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYSGSPHVFEGHPFIVEAGLSLGGKDVKQGLNIFRFANRIPLLFEQGADVVTRTALKRINWNNYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDISEIASAVKSSIQQCCVQLKSKIMKKIQAREQQERKRNLSKYIPDATGAIYDVLREMAQQHASKKKRYEGEDAEILKQVSARLITKQTLHDKLAKHVEQVDYEMALDYATQSG 640          
BLAST of Ggra8406.t1 vs. uniprot
Match: TOP6B (DNA topoisomerase 6 subunit B n=36 Tax=Brassicaceae TaxID=3700 RepID=TOP6B_ARATH)

HSP 1 Score: 596 bits (1536), Expect = 4.480e-197
Identity = 322/642 (50.16%), Postives = 419/642 (65.26%), Query Frame = 0
Query:  465 AEQQHLKFKSPAEFFAENKNIAGFDNAGKSLYTTIRELVENALDAAEAVHQLPRVSLLVQRIPPHRFRALVGMDAARERVDHSLYKDVENVKERRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTKPSRQLPNDVFRVTVQDNGCGMAHHDVPNMMGRVLAGTKYCVRQARGKFGLGSKMALIWAKMSTGLPVHITTAQRGAP-ITECVLDIDITNNVPTVIKHTQTPNPKKWRGTIVAVTIDGNWSTYRSKILAYMRQMAVITPYAQFHFKFQSALHATGAKDFEAIFSRRTDHMPPSSREVKHHPSSVNQLILKQLIEQISPSTTLVRFLSSQFDAIPRTLAVRLINELGGDFTSHMTVKQLNLNHIRQIDALLHAVRFEKPSGSCLSPAGEYNLRLGITKELKPNLVATHAEPPDVFEGHPFIVEAGVALGGSGMKPGINIYRFANRIPLLFEAGNDVVTKTARDSIRWNNYKMSPTTDRIAVICSIVSTKIPFKGTGKEYIGDDSDAIKACVKRAISQCCLQLKTKLVRRAAQKDAAERKKTITKYAPDVANAIVGVFKELRDPEQSTRE--------VVDKVQSGQITKDSLINKLIEHVQQIDKEQAIECASAAGRHNKQIETAFL 1097
            + +  LK KSPAEFFAENKNIAGFDN GKSLYTT+RELVENALD+AE++ +LP V + ++ I   +F +++G+   RERVD  LY D E  K R                                       +           ++VT +DNG GM H D+PNM GRVL+GTKY ++Q RGKFGLG+KMALIW+KMSTGLP+ I+++ +    +T C LDIDI  N+P +  H +  N +KW G  + V I+GNW+TYRSKIL YMRQMAVITPYAQF F+F S    T  K+    F+RRTD MPP   E KHHPSSV+ L++K+LI   S  T L++FL ++F  I +TLA RLI E+G DF   M VK +    + +I  L    +F+ PSG CLSPAGEYNLRLGI KEL P++VAT++    VFEGHPFIVEAGV+LGG  +K GINI+RFANRIPLLFE G DVVT+TA   I WN+YK++ T D+I V  SIVSTKIPFKGTGKEYIGDD   I   VK AI QCC+QLK+K+V+R   ++  ERK+++++Y PD   A+  V K++ +  ++ R+        ++DKV    ITK++L  KL EHV+Q+D E A+E A+ +G   +  E  +L
Sbjct:   20 SNESKLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSAESISELPEVEVTIEEIVKSKFNSMIGL-IDRERVDTQLYDDYETEKARGKRLAKEARASEIQAKNLASGKKNKEPGVSKVLKARGEAS----------YYKVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMKSQNYVTFCRLDIDIHRNIPHIHLHEKKGNKEKWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFISE---TPEKNVTIKFTRRTDVMPPIPIETKHHPSSVDLLLIKRLITDTSKKT-LLQFLQNEFVNINKTLAARLIGEMGPDFGPSMAVKSVTSQQMVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSLGGRDVKQGINIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDISEIATAVKSAIQQCCIQLKSKIVKRLQAREQQERKRSLSRYIPDATGAVYEVLKQMTEEHKTKRKRYGEEDIVMLDKVSKQIITKETLKEKLAEHVEQVDYEMALEYATQSGVSEEPRENIYL 646          
The following BLAST results are available for this feature:
BLAST of Ggra8406.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IKM20.000e+074.26DNA topoisomerase 6 subunit B n=1 Tax=Gracilariops... [more]
R7QF501.390e-30066.42Type II DNA topoisomerase VI subunit B n=1 Tax=Cho... [more]
A0A1Y1I7R13.250e-20451.52DNA topoisomerase 6 subunit B n=1 Tax=Klebsormidiu... [more]
DNA topoisomerase 6 subunit B isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C3E1E1.830e-19949.69DNA topoisomerase 6 subunit B isoform X1 n=2 Tax=T... [more]
A0A199UVR21.340e-19849.54DNA topoisomerase 6 subunit B n=1 Tax=Ananas comos... [more]
A0A0K9P2W31.050e-19748.80DNA topoisomerase 6 subunit B n=1 Tax=Zostera mari... [more]
DNA topoisomerase 6 subunit B n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CFB766A1.170e-19749.47DNA topoisomerase 6 subunit B n=2 Tax=Anacardiacea... [more]
LOW QUALITY PROTEIN: DNA topoisomerase 6 subunit B n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929AE2F1.380e-19747.70LOW QUALITY PROTEIN: DNA topoisomerase 6 subunit B... [more]
A0A200Q8742.580e-19750.40DNA topoisomerase 6 subunit B n=2 Tax=Papaveroidea... [more]
TOP6B4.480e-19750.16DNA topoisomerase 6 subunit B n=36 Tax=Brassicacea... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 552..572
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 105..130
score: 39.23
coord: 27..43
score: 34.12
coord: 4..25
score: 27.27
coord: 46..63
score: 32.22
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 278..352
e-value: 2.0E-13
score: 52.2
NoneNo IPR availableGENE3D1.10.8.50coord: 777..855
e-value: 2.1E-7
score: 33.2
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 353..415
e-value: 9.3E-10
score: 40.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..219
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 417..452
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..55
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 412..1048
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..1138
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availableSUPERFAMILY101447Formin homology 2 domain (FH2 domain)coord: 149..158
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 298..321
e-value: 0.025
score: 23.7
coord: 327..350
e-value: 0.001
score: 28.4
coord: 356..379
e-value: 0.019
score: 24.2
coord: 386..409
e-value: 0.037
score: 23.2
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 327..350
e-value: 0.0088
score: 16.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 358..379
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 388..409
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 300..321
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 329..350
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 356..384
score: 10.05518
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 386..409
score: 9.909698
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 298..326
score: 12.299755
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 327..355
score: 11.717827
IPR036890Histidine kinase/HSP90-like ATPase superfamilyGENE3D3.30.565.10coord: 464..776
e-value: 5.0E-62
score: 211.4
IPR036890Histidine kinase/HSP90-like ATPase superfamilySUPERFAMILY55874ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinasecoord: 602..747
IPR015320DNA topoisomerase VI, subunit B, transducerPFAMPF09239Topo-VIb_transcoord: 857..1015
e-value: 4.1E-51
score: 173.0
IPR015320DNA topoisomerase VI, subunit B, transducerCDDcd00823TopoIIB_Transcoord: 866..1016
e-value: 5.48175E-53
score: 180.174
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 856..1080
e-value: 1.5E-65
score: 222.4
IPR005734DNA topoisomerase VI, subunit BPANTHERPTHR10871:SF4DNA TOPOISOMERASE 6 SUBUNIT Bcoord: 412..1048
IPR005734DNA topoisomerase VI, subunit BHAMAPMF_00322Top6Bcoord: 467..1056
score: 25.045345
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 307..365
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 354..405
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 856..1018

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:484604..488729 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8406.t1Ggra8406.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 484604..488729 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8406.t1 ID=Ggra8406.t1|Name=Ggra8406.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=1139bp
MPLVRVLPAVPAAPSPFASPPPSSPPPPPPPQPPPQPPRRSSKRASYSPP
THSPKRSRLAEQPARRSVPAAAPFAPTSSAFWGTVLDHSRAHRSVTLPIV
PSASPPPAQPPPQPPQPQPPPQPQPPPPPPPPPLQSIAHAPLHTPLAPPP
PPPPPPPPPQQQQQQQQPPQSLRARTGALLARLSPFRSAASSPRAREAAV
HSHHARVTRSRSPSLSRASHVLLKRPRARHVSDLTAATLHRTRSAAEPRA
HVHATPPPAGTAGTVRMAGTVRTAGTVRTAGTARGGGAAGASDQGAKFSC
DLCSSKFRRKSDKNRHVRVVHEKSRPFQCPVCSKTFGEKSNMLKHRTSVH
DDVRTFRCPYCNDSFAQRGLCDTHVRVVHGKKQAKYFCEHCGLPFSKKQQ
LNEHYEQQHPQWLMSYAPGYEPATAEQPPAQPRAHASSSDAPHRQHAAGA
ALHALSPYEPYGSGAEQQHLKFKSPAEFFAENKNIAGFDNAGKSLYTTIR
ELVENALDAAEAVHQLPRVSLLVQRIPPHRFRALVGMDAARERVDHSLYK
DVENVKERRAREAKERRVAKRAAAANGAAATAATAATAATAATAAAATTK
PSRQLPNDVFRVTVQDNGCGMAHHDVPNMMGRVLAGTKYCVRQARGKFGL
GSKMALIWAKMSTGLPVHITTAQRGAPITECVLDIDITNNVPTVIKHTQT
PNPKKWRGTIVAVTIDGNWSTYRSKILAYMRQMAVITPYAQFHFKFQSAL
HATGAKDFEAIFSRRTDHMPPSSREVKHHPSSVNQLILKQLIEQISPSTT
LVRFLSSQFDAIPRTLAVRLINELGGDFTSHMTVKQLNLNHIRQIDALLH
AVRFEKPSGSCLSPAGEYNLRLGITKELKPNLVATHAEPPDVFEGHPFIV
EAGVALGGSGMKPGINIYRFANRIPLLFEAGNDVVTKTARDSIRWNNYKM
SPTTDRIAVICSIVSTKIPFKGTGKEYIGDDSDAIKACVKRAISQCCLQL
KTKLVRRAAQKDAAERKKTITKYAPDVANAIVGVFKELRDPEQSTREVVD
KVQSGQITKDSLINKLIEHVQQIDKEQAIECASAAGRHNKQIETAFLARR
SEQNAYLNIWHGTLNAKSVAAPSPPIRLSLLKSLQAKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036890HATPase_C_sf
IPR015320TopoVI_B_transducer
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR005734TopoVI_B
IPR036236Znf_C2H2_sf
IPR020568Ribosomal_S5_D2-typ_fold