Ggra8469.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8469.t1
Unique NameGgra8469.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length236
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:797561..798411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706310.1
Preferred namePSMA2
PFAMsProteasome,Proteasome_A_N
Max annot lvl2759|Eukaryota
KEGG koko:K02726
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0000932,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005839,GO:0005840,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006955,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009617,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016192,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0022626,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034774,GO:0035770,GO:0036211,GO:0036230,GO:0036464,GO:0042119,GO:0042175,GO:0042221,GO:0042742,GO:0042802,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051704,GO:0051707,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0090068,GO:0097708,GO:0098542,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2001252
Evalue4.21e-124
EggNOG OGsKOG0181@1|root,KOG0181@2759|Eukaryota
EC3.4.25.1
Descriptionthreonine-type endopeptidase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8469Ggra8469Gracilaria gracilis GNS1m malegenetig00000041_pilon 797561..798411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8469.t1Ggra8469.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 797561..798411 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8469.t1.stop1Ggra8469.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 797561..797563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8469.t1.CDS1Ggra8469.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 797561..798150 -
Ggra8469.t1.CDS2Ggra8469.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000041_pilon 798294..798411 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8469.t1.exon1Ggra8469.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 797561..798150 -
Ggra8469.t1.exon2Ggra8469.t1.exon2Gracilaria gracilis GNS1m maleexontig00000041_pilon 798294..798411 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8469.t1.intron1Ggra8469.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000041_pilon 798151..798293 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8469.t1.start1Ggra8469.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 798409..798411 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8469.t1 ID=Ggra8469.t1|Name=Ggra8469.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=236bp
MGESDYSFSLTTFSPSGRLVQIEYALNAVTAGATALGIKANNGIVLATEK
RLPSPLMDLESIQKVSMITKSIGIVYAGMGPDSRVLIKKARKAAQSYYQV
YNESIPVGQLVREVASVMQEFTQSGGVRPFGVSLLVAGFDEEGPQLCQID
PSGSYYAWKASAIGKNMVNAKTFLEKRYADDIELEDAIHTAILTLKEGFE
GQVTENNIEIGIIGEDKMFKTLTPAETKDYLTELE*
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spliced messenger RNA

>Ggra8469.t1 ID=Ggra8469.t1|Name=Ggra8469.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00000041_pilon:797561..798411- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGAATCAGACTACTCCTTCTCGCTCACCACTTTCAGTCCCAGTGG
ACGTTTGGTGCAGATCGAGTATGCCCTCAACGCCGTAACCGCCGGCGCCA
CAGCCTTGGGAATAAAAGCGAACAATGGCATCGTTCTGGCTACTGAAAAG
CGTTTACCGTCACCTCTGATGGATTTGGAGAGTATACAGAAGGTATCTAT
GATAACAAAATCAATAGGAATCGTGTATGCTGGTATGGGTCCCGACTCAC
GAGTGCTGATCAAAAAGGCGAGAAAGGCGGCTCAATCTTATTATCAAGTC
TACAACGAATCCATACCAGTGGGACAACTAGTGCGAGAGGTAGCGAGCGT
GATGCAAGAATTCACCCAAAGCGGTGGTGTACGTCCGTTCGGAGTTAGTT
TATTGGTGGCCGGTTTTGATGAGGAAGGTCCCCAATTGTGCCAGATCGAT
CCCAGCGGTAGTTATTACGCATGGAAAGCAAGCGCTATTGGAAAGAATAT
GGTCAATGCCAAGACATTCCTAGAAAAACGTTATGCGGATGACATTGAGC
TTGAAGACGCCATTCATACGGCTATTCTGACCTTGAAGGAAGGTTTTGAA
GGCCAGGTCACTGAAAATAACATTGAGATTGGAATCATTGGTGAGGATAA
GATGTTCAAGACTCTCACCCCAGCAGAGACGAAAGACTATCTTACTGAGC
TTGAATAG
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protein sequence of Ggra8469.t1

>Ggra8469.t1 ID=Ggra8469.t1|Name=Ggra8469.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=236bp
MGESDYSFSLTTFSPSGRLVQIEYALNAVTAGATALGIKANNGIVLATEK
RLPSPLMDLESIQKVSMITKSIGIVYAGMGPDSRVLIKKARKAAQSYYQV
YNESIPVGQLVREVASVMQEFTQSGGVRPFGVSLLVAGFDEEGPQLCQID
PSGSYYAWKASAIGKNMVNAKTFLEKRYADDIELEDAIHTAILTLKEGFE
GQVTENNIEIGIIGEDKMFKTLTPAETKDYLTELE*
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mRNA from alignment at tig00000041_pilon:797561..798411-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8469.t1 ID=Ggra8469.t1|Name=Ggra8469.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=851bp|location=Sequence derived from alignment at tig00000041_pilon:797561..798411- (Gracilaria gracilis GNS1m male)
ATGGGTGAATCAGACTACTCCTTCTCGCTCACCACTTTCAGTCCCAGTGG
ACGTTTGGTGCAGATCGAGTATGCCCTCAACGCCGTAACCGCCGGCGCCA
CAGCCTTGGGAATAAAAGGTGAGTATGCGCTTCATCCACCCTTCAACCTT
CGTATCTCATTGCGGCTCATGCAATGAGGAAGATGCCCTTATCCTTGCTC
CAGAGCGATTAAAAAGCGATCTAACCTTGCATTCGTTTTGCTGCAAATTC
GATTCTCGCAGCGAACAATGGCATCGTTCTGGCTACTGAAAAGCGTTTAC
CGTCACCTCTGATGGATTTGGAGAGTATACAGAAGGTATCTATGATAACA
AAATCAATAGGAATCGTGTATGCTGGTATGGGTCCCGACTCACGAGTGCT
GATCAAAAAGGCGAGAAAGGCGGCTCAATCTTATTATCAAGTCTACAACG
AATCCATACCAGTGGGACAACTAGTGCGAGAGGTAGCGAGCGTGATGCAA
GAATTCACCCAAAGCGGTGGTGTACGTCCGTTCGGAGTTAGTTTATTGGT
GGCCGGTTTTGATGAGGAAGGTCCCCAATTGTGCCAGATCGATCCCAGCG
GTAGTTATTACGCATGGAAAGCAAGCGCTATTGGAAAGAATATGGTCAAT
GCCAAGACATTCCTAGAAAAACGTTATGCGGATGACATTGAGCTTGAAGA
CGCCATTCATACGGCTATTCTGACCTTGAAGGAAGGTTTTGAAGGCCAGG
TCACTGAAAATAACATTGAGATTGGAATCATTGGTGAGGATAAGATGTTC
AAGACTCTCACCCCAGCAGAGACGAAAGACTATCTTACTGAGCTTGAATA
G
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Coding sequence (CDS) from alignment at tig00000041_pilon:797561..798411-

>Ggra8469.t1 ID=Ggra8469.t1|Name=Ggra8469.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=708bp|location=Sequence derived from alignment at tig00000041_pilon:797561..798411- (Gracilaria gracilis GNS1m male)
ATGGGTGAATCAGACTACTCCTTCTCGCTCACCACTTTCAGTCCCAGTGG
ACGTTTGGTGCAGATCGAGTATGCCCTCAACGCCGTAACCGCCGGCGCCA
CAGCCTTGGGAATAAAAGCGAACAATGGCATCGTTCTGGCTACTGAAAAG
CGTTTACCGTCACCTCTGATGGATTTGGAGAGTATACAGAAGGTATCTAT
GATAACAAAATCAATAGGAATCGTGTATGCTGGTATGGGTCCCGACTCAC
GAGTGCTGATCAAAAAGGCGAGAAAGGCGGCTCAATCTTATTATCAAGTC
TACAACGAATCCATACCAGTGGGACAACTAGTGCGAGAGGTAGCGAGCGT
GATGCAAGAATTCACCCAAAGCGGTGGTGTACGTCCGTTCGGAGTTAGTT
TATTGGTGGCCGGTTTTGATGAGGAAGGTCCCCAATTGTGCCAGATCGAT
CCCAGCGGTAGTTATTACGCATGGAAAGCAAGCGCTATTGGAAAGAATAT
GGTCAATGCCAAGACATTCCTAGAAAAACGTTATGCGGATGACATTGAGC
TTGAAGACGCCATTCATACGGCTATTCTGACCTTGAAGGAAGGTTTTGAA
GGCCAGGTCACTGAAAATAACATTGAGATTGGAATCATTGGTGAGGATAA
GATGTTCAAGACTCTCACCCCAGCAGAGACGAAAGACTATCTTACTGAGC
TTGAATAG
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