Ggra8495.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8495.t1
Unique Name	Ggra8495.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	637

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:881113..883023 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8495	Ggra8495	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 881113..883023 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8495.t1.start1	Ggra8495.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 881113..881115 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8495.t1.CDS1	Ggra8495.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 881113..883023 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8495.t1.exon1	Ggra8495.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 881113..883023 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8495.t1.stop1	Ggra8495.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 883021..883023 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8495.t1	Ggra8495.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 881113..883023 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:881113..883023+
coding sequence from alignment at tig00000041_pilon:881113..883023+

mRNA sequence

>Ggra8495.t1 ID=Ggra8495.t1|Name=Ggra8495.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=637bp
MVGRYRGLRAELSTILAVDEYAQQPVQHDVPPPNESISAHLAHLITRATE
HPDEARTVYAYLPSIMLRIFGFAPGQGWLETCSELPSRDRDALVSIVLPD
GPLHTFCTKHTRPRSKSIDFVHDMRFEFPRRNLPSLTNHALDDQDLSPRT
SRSYLAPLLAPSMRNETDDVIFLSPLDYFFICMIASSTCKYVNAPGASTT
KIPKRSRSIPSIRAQYNQVISAYAVLRDPSAAVDNNDIFIPTCLDYLIIP
WVTASPTKLPYLSTSTADAIATLLLALPPSSPRDLDLSAESCNLATNRMM
NFRFVTNSGALYCFLPSMLDMIFSNYDSATPIFPLNAYIRVLSLMIAPWR
QSIRSTAAQMLLPKPKPNKGQQGNGSQPMTAWSSTLSSINAHLPSSTGSP
GNATSVKEAKWREELGQRHSKCDKALLRSAVILAASMHIASSADGVRVLS
LLTEAAQSARLYSVTVPEEDPDRMEELQLCLDALRDQKSQLQRKGGHRGR
NFIPILAANLGDKPSNGGVLRGISEIVGVGRGKVVSAVNGGSSSSTRRRL
KDFRDNWMGSAQDVDVPFIGNVWDRPISGNESEMLVLFAYWLAVKMEPRL
GFLPNIRFLGQYWVWGLIAFFCFLILVTKSVVASLT*

spliced messenger RNA

>Ggra8495.t1 ID=Ggra8495.t1|Name=Ggra8495.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1911bp|location=Sequence derived from alignment at tig00000041_pilon:881113..883023+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGGTCGATACCGAGGTCTTCGTGCCGAGTTATCCACCATCCTGGC
CGTCGACGAGTACGCCCAACAACCTGTTCAACATGATGTCCCCCCGCCAA
ACGAATCCATCTCTGCCCACCTGGCTCATCTCATCACCCGCGCCACCGAA
CACCCTGATGAGGCTCGCACCGTGTACGCCTATCTCCCTTCCATCATGCT
TCGCATCTTCGGCTTTGCTCCCGGCCAAGGCTGGCTTGAAACTTGTTCCG
AACTCCCAAGTCGTGATCGCGATGCCCTCGTGTCCATTGTTCTTCCTGAC
GGACCCTTGCATACGTTTTGCACGAAACATACGCGCCCTAGATCGAAGAG
TATTGATTTCGTACATGACATGCGCTTTGAGTTTCCCAGACGCAATTTAC
CCAGTCTTACAAATCATGCATTGGATGATCAAGACTTATCTCCGCGCACT
TCTCGATCTTATCTTGCACCGTTGCTTGCTCCGTCCATGCGTAATGAAAC
GGATGATGTTATTTTCTTATCGCCGCTTGATTACTTCTTCATCTGCATGA
TTGCGTCTTCTACCTGCAAGTACGTCAATGCTCCTGGTGCATCTACGACC
AAGATTCCGAAGCGATCGCGTTCTATCCCTTCAATACGAGCTCAGTACAA
TCAGGTGATAAGCGCATATGCTGTTCTACGCGATCCGTCCGCTGCAGTGG
ACAACAACGACATTTTCATTCCCACCTGTCTTGACTACTTGATCATTCCA
TGGGTAACTGCCTCTCCAACAAAACTGCCATATTTATCAACTTCAACCGC
AGATGCGATTGCCACTCTTCTTCTTGCACTACCACCATCGTCTCCGAGAG
ACCTTGACCTTAGTGCCGAATCTTGCAATCTCGCAACAAACCGCATGATG
AACTTTCGATTTGTAACAAACTCAGGAGCCTTGTATTGTTTTTTACCTTC
CATGTTAGACATGATTTTCTCTAACTATGACTCAGCCACCCCCATTTTTC
CTCTCAACGCTTACATTCGAGTGCTTTCCCTCATGATCGCACCCTGGCGC
CAAAGTATCCGCAGCACTGCTGCGCAAATGCTTTTGCCGAAACCCAAACC
TAACAAGGGTCAGCAAGGGAATGGTTCTCAACCTATGACTGCATGGTCGT
CCACACTTTCATCTATAAATGCACATTTGCCCTCCTCTACTGGTTCCCCG
GGCAATGCTACGTCTGTGAAGGAAGCGAAATGGAGGGAAGAGCTTGGACA
GAGACATTCCAAATGTGACAAAGCTCTCCTCAGATCTGCTGTTATACTGG
CCGCGAGCATGCACATTGCGTCGTCGGCGGATGGTGTTCGCGTTCTTTCG
CTGTTGACCGAAGCAGCACAATCGGCTCGTCTATATTCTGTCACAGTGCC
GGAGGAAGACCCTGATCGTATGGAAGAGCTTCAGCTATGTCTCGATGCCT
TGCGAGACCAGAAGTCCCAACTCCAACGCAAAGGAGGTCATCGTGGAAGA
AACTTCATCCCTATTCTTGCGGCCAATCTCGGAGATAAGCCAAGTAATGG
AGGTGTGCTCCGAGGTATATCGGAAATTGTTGGTGTCGGGAGAGGGAAAG
TCGTTTCCGCTGTAAATGGAGGGAGTTCATCTAGTACTAGGCGACGCCTG
AAAGATTTTCGGGACAACTGGATGGGAAGCGCGCAAGATGTGGATGTGCC
ATTCATTGGAAACGTGTGGGACAGGCCGATTTCTGGTAACGAAAGTGAAA
TGCTTGTCCTGTTTGCCTACTGGCTTGCTGTTAAGATGGAACCAAGACTC
GGGTTTCTGCCAAATATTCGTTTCTTGGGACAATACTGGGTGTGGGGCTT
GATTGCCTTCTTCTGCTTCTTGATATTAGTTACGAAGAGTGTAGTTGCAT
CTCTGACTTAG

protein sequence of Ggra8495.t1

>Ggra8495.t1 ID=Ggra8495.t1|Name=Ggra8495.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=637bp
MVGRYRGLRAELSTILAVDEYAQQPVQHDVPPPNESISAHLAHLITRATE
HPDEARTVYAYLPSIMLRIFGFAPGQGWLETCSELPSRDRDALVSIVLPD
GPLHTFCTKHTRPRSKSIDFVHDMRFEFPRRNLPSLTNHALDDQDLSPRT
SRSYLAPLLAPSMRNETDDVIFLSPLDYFFICMIASSTCKYVNAPGASTT
KIPKRSRSIPSIRAQYNQVISAYAVLRDPSAAVDNNDIFIPTCLDYLIIP
WVTASPTKLPYLSTSTADAIATLLLALPPSSPRDLDLSAESCNLATNRMM
NFRFVTNSGALYCFLPSMLDMIFSNYDSATPIFPLNAYIRVLSLMIAPWR
QSIRSTAAQMLLPKPKPNKGQQGNGSQPMTAWSSTLSSINAHLPSSTGSP
GNATSVKEAKWREELGQRHSKCDKALLRSAVILAASMHIASSADGVRVLS
LLTEAAQSARLYSVTVPEEDPDRMEELQLCLDALRDQKSQLQRKGGHRGR
NFIPILAANLGDKPSNGGVLRGISEIVGVGRGKVVSAVNGGSSSSTRRRL
KDFRDNWMGSAQDVDVPFIGNVWDRPISGNESEMLVLFAYWLAVKMEPRL
GFLPNIRFLGQYWVWGLIAFFCFLILVTKSVVASLT*

mRNA from alignment at tig00000041_pilon:881113..883023+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8495.t1 ID=Ggra8495.t1|Name=Ggra8495.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1911bp|location=Sequence derived from alignment at tig00000041_pilon:881113..883023+ (Gracilaria gracilis GNS1m male)
ATGGTGGGTCGATACCGAGGTCTTCGTGCCGAGTTATCCACCATCCTGGC
CGTCGACGAGTACGCCCAACAACCTGTTCAACATGATGTCCCCCCGCCAA
ACGAATCCATCTCTGCCCACCTGGCTCATCTCATCACCCGCGCCACCGAA
CACCCTGATGAGGCTCGCACCGTGTACGCCTATCTCCCTTCCATCATGCT
TCGCATCTTCGGCTTTGCTCCCGGCCAAGGCTGGCTTGAAACTTGTTCCG
AACTCCCAAGTCGTGATCGCGATGCCCTCGTGTCCATTGTTCTTCCTGAC
GGACCCTTGCATACGTTTTGCACGAAACATACGCGCCCTAGATCGAAGAG
TATTGATTTCGTACATGACATGCGCTTTGAGTTTCCCAGACGCAATTTAC
CCAGTCTTACAAATCATGCATTGGATGATCAAGACTTATCTCCGCGCACT
TCTCGATCTTATCTTGCACCGTTGCTTGCTCCGTCCATGCGTAATGAAAC
GGATGATGTTATTTTCTTATCGCCGCTTGATTACTTCTTCATCTGCATGA
TTGCGTCTTCTACCTGCAAGTACGTCAATGCTCCTGGTGCATCTACGACC
AAGATTCCGAAGCGATCGCGTTCTATCCCTTCAATACGAGCTCAGTACAA
TCAGGTGATAAGCGCATATGCTGTTCTACGCGATCCGTCCGCTGCAGTGG
ACAACAACGACATTTTCATTCCCACCTGTCTTGACTACTTGATCATTCCA
TGGGTAACTGCCTCTCCAACAAAACTGCCATATTTATCAACTTCAACCGC
AGATGCGATTGCCACTCTTCTTCTTGCACTACCACCATCGTCTCCGAGAG
ACCTTGACCTTAGTGCCGAATCTTGCAATCTCGCAACAAACCGCATGATG
AACTTTCGATTTGTAACAAACTCAGGAGCCTTGTATTGTTTTTTACCTTC
CATGTTAGACATGATTTTCTCTAACTATGACTCAGCCACCCCCATTTTTC
CTCTCAACGCTTACATTCGAGTGCTTTCCCTCATGATCGCACCCTGGCGC
CAAAGTATCCGCAGCACTGCTGCGCAAATGCTTTTGCCGAAACCCAAACC
TAACAAGGGTCAGCAAGGGAATGGTTCTCAACCTATGACTGCATGGTCGT
CCACACTTTCATCTATAAATGCACATTTGCCCTCCTCTACTGGTTCCCCG
GGCAATGCTACGTCTGTGAAGGAAGCGAAATGGAGGGAAGAGCTTGGACA
GAGACATTCCAAATGTGACAAAGCTCTCCTCAGATCTGCTGTTATACTGG
CCGCGAGCATGCACATTGCGTCGTCGGCGGATGGTGTTCGCGTTCTTTCG
CTGTTGACCGAAGCAGCACAATCGGCTCGTCTATATTCTGTCACAGTGCC
GGAGGAAGACCCTGATCGTATGGAAGAGCTTCAGCTATGTCTCGATGCCT
TGCGAGACCAGAAGTCCCAACTCCAACGCAAAGGAGGTCATCGTGGAAGA
AACTTCATCCCTATTCTTGCGGCCAATCTCGGAGATAAGCCAAGTAATGG
AGGTGTGCTCCGAGGTATATCGGAAATTGTTGGTGTCGGGAGAGGGAAAG
TCGTTTCCGCTGTAAATGGAGGGAGTTCATCTAGTACTAGGCGACGCCTG
AAAGATTTTCGGGACAACTGGATGGGAAGCGCGCAAGATGTGGATGTGCC
ATTCATTGGAAACGTGTGGGACAGGCCGATTTCTGGTAACGAAAGTGAAA
TGCTTGTCCTGTTTGCCTACTGGCTTGCTGTTAAGATGGAACCAAGACTC
GGGTTTCTGCCAAATATTCGTTTCTTGGGACAATACTGGGTGTGGGGCTT
GATTGCCTTCTTCTGCTTCTTGATATTAGTTACGAAGAGTGTAGTTGCAT
CTCTGACTTAG

Coding sequence (CDS) from alignment at tig00000041_pilon:881113..883023+

>Ggra8495.t1 ID=Ggra8495.t1|Name=Ggra8495.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1911bp|location=Sequence derived from alignment at tig00000041_pilon:881113..883023+ (Gracilaria gracilis GNS1m male)
ATGGTGGGTCGATACCGAGGTCTTCGTGCCGAGTTATCCACCATCCTGGC
CGTCGACGAGTACGCCCAACAACCTGTTCAACATGATGTCCCCCCGCCAA
ACGAATCCATCTCTGCCCACCTGGCTCATCTCATCACCCGCGCCACCGAA
CACCCTGATGAGGCTCGCACCGTGTACGCCTATCTCCCTTCCATCATGCT
TCGCATCTTCGGCTTTGCTCCCGGCCAAGGCTGGCTTGAAACTTGTTCCG
AACTCCCAAGTCGTGATCGCGATGCCCTCGTGTCCATTGTTCTTCCTGAC
GGACCCTTGCATACGTTTTGCACGAAACATACGCGCCCTAGATCGAAGAG
TATTGATTTCGTACATGACATGCGCTTTGAGTTTCCCAGACGCAATTTAC
CCAGTCTTACAAATCATGCATTGGATGATCAAGACTTATCTCCGCGCACT
TCTCGATCTTATCTTGCACCGTTGCTTGCTCCGTCCATGCGTAATGAAAC
GGATGATGTTATTTTCTTATCGCCGCTTGATTACTTCTTCATCTGCATGA
TTGCGTCTTCTACCTGCAAGTACGTCAATGCTCCTGGTGCATCTACGACC
AAGATTCCGAAGCGATCGCGTTCTATCCCTTCAATACGAGCTCAGTACAA
TCAGGTGATAAGCGCATATGCTGTTCTACGCGATCCGTCCGCTGCAGTGG
ACAACAACGACATTTTCATTCCCACCTGTCTTGACTACTTGATCATTCCA
TGGGTAACTGCCTCTCCAACAAAACTGCCATATTTATCAACTTCAACCGC
AGATGCGATTGCCACTCTTCTTCTTGCACTACCACCATCGTCTCCGAGAG
ACCTTGACCTTAGTGCCGAATCTTGCAATCTCGCAACAAACCGCATGATG
AACTTTCGATTTGTAACAAACTCAGGAGCCTTGTATTGTTTTTTACCTTC
CATGTTAGACATGATTTTCTCTAACTATGACTCAGCCACCCCCATTTTTC
CTCTCAACGCTTACATTCGAGTGCTTTCCCTCATGATCGCACCCTGGCGC
CAAAGTATCCGCAGCACTGCTGCGCAAATGCTTTTGCCGAAACCCAAACC
TAACAAGGGTCAGCAAGGGAATGGTTCTCAACCTATGACTGCATGGTCGT
CCACACTTTCATCTATAAATGCACATTTGCCCTCCTCTACTGGTTCCCCG
GGCAATGCTACGTCTGTGAAGGAAGCGAAATGGAGGGAAGAGCTTGGACA
GAGACATTCCAAATGTGACAAAGCTCTCCTCAGATCTGCTGTTATACTGG
CCGCGAGCATGCACATTGCGTCGTCGGCGGATGGTGTTCGCGTTCTTTCG
CTGTTGACCGAAGCAGCACAATCGGCTCGTCTATATTCTGTCACAGTGCC
GGAGGAAGACCCTGATCGTATGGAAGAGCTTCAGCTATGTCTCGATGCCT
TGCGAGACCAGAAGTCCCAACTCCAACGCAAAGGAGGTCATCGTGGAAGA
AACTTCATCCCTATTCTTGCGGCCAATCTCGGAGATAAGCCAAGTAATGG
AGGTGTGCTCCGAGGTATATCGGAAATTGTTGGTGTCGGGAGAGGGAAAG
TCGTTTCCGCTGTAAATGGAGGGAGTTCATCTAGTACTAGGCGACGCCTG
AAAGATTTTCGGGACAACTGGATGGGAAGCGCGCAAGATGTGGATGTGCC
ATTCATTGGAAACGTGTGGGACAGGCCGATTTCTGGTAACGAAAGTGAAA
TGCTTGTCCTGTTTGCCTACTGGCTTGCTGTTAAGATGGAACCAAGACTC
GGGTTTCTGCCAAATATTCGTTTCTTGGGACAATACTGGGTGTGGGGCTT
GATTGCCTTCTTCTGCTTCTTGATATTAGTTACGAAGAGTGTAGTTGCAT
CTCTGACTTAG