Ggra8484.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8484.t1
Unique NameGgra8484.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:851303..852340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1094980.Mpsy_0865
PFAMsAIM24
Max annot lvl224756|Methanomicrobia
Evalue5.32e-50
EggNOG OGsCOG2013@1|root,arCOG01908@2157|Archaea,2XUJJ@28890|Euryarchaeota,2N9IN@224756|Methanomicrobia
DescriptionMitochondrial biogenesis AIM24
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8484Ggra8484Gracilaria gracilis GNS1m malegenetig00000041_pilon 851303..852340 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8484.t1.stop1Ggra8484.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 851303..851305 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8484.t1.CDS1Ggra8484.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 851303..852340 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8484.t1.exon1Ggra8484.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 851303..852340 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8484.t1.start1Ggra8484.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 852338..852340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8484.t1Ggra8484.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 851303..852340 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8484.t1 ID=Ggra8484.t1|Name=Ggra8484.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=346bp
MSSTSSLPDGWQLLSTPSGQPLYYCAATRRTTWQPPQSACAASSCSSQPS
SLRDASSPATPAPPQRFPIGNRQVLTRANNNCHSSSTQHSRQRRASDDSR
YTFPTLVHNTRSRARGYPLFELEREKVLQINLGSTQDAFVWIRCGSMIAR
RGNISFSRQRFRDEGLSSVVKRALTGEGIRMTKCVGRGTIYCASNGRAVC
LVQLRQQSVFVNGDKIMAMSQSVQHDVQLVKGAGMAASGLFAIKVSGSGF
VAFMCEKSAITLQASEEDPVYTDADCTVAWTHAPSLKLDLSLRLCVGRKS
GHEAQLKFCAGVVIVQPYRSETTIVSERVASVGAHVATGVLHALT*
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spliced messenger RNA

>Ggra8484.t1 ID=Ggra8484.t1|Name=Ggra8484.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00000041_pilon:851303..852340- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCCACAAGCTCATTACCTGACGGCTGGCAACTGCTATCCACGCC
GTCCGGACAGCCGCTCTACTACTGCGCCGCCACGCGGCGCACCACCTGGC
AGCCGCCGCAGTCGGCGTGCGCTGCAAGCAGTTGCAGCTCGCAGCCATCG
TCGCTGCGCGACGCGTCATCGCCGGCAACGCCGGCGCCTCCGCAACGCTT
CCCGATCGGAAACAGACAAGTGCTGACGCGCGCCAACAACAACTGCCACT
CGTCGTCGACGCAGCATTCGCGGCAGCGGCGTGCGTCGGACGATTCGCGC
TACACGTTCCCCACGCTGGTGCACAACACGCGCAGTCGCGCGCGCGGCTA
CCCGCTGTTCGAGCTGGAGCGCGAGAAGGTGCTGCAGATCAATCTGGGCA
GCACGCAGGATGCGTTTGTGTGGATCCGATGCGGCAGCATGATCGCGCGT
CGTGGAAACATCTCCTTCTCCAGACAGCGCTTCCGCGACGAGGGGCTGTC
CAGCGTGGTGAAGCGCGCGTTGACGGGCGAGGGCATTCGCATGACCAAGT
GCGTGGGCCGGGGCACGATTTACTGCGCGTCCAACGGGCGCGCGGTGTGC
TTGGTGCAGCTGCGGCAGCAGAGCGTGTTCGTGAACGGCGACAAGATCAT
GGCCATGTCGCAGTCGGTGCAGCACGACGTGCAGCTGGTGAAGGGCGCCG
GCATGGCGGCCTCCGGGCTGTTCGCCATCAAGGTGAGCGGCAGCGGCTTT
GTGGCGTTCATGTGCGAGAAGTCGGCCATCACGCTGCAGGCGAGCGAGGA
GGACCCGGTGTACACGGACGCGGACTGCACGGTGGCGTGGACGCACGCGC
CTTCGCTCAAGCTGGACCTGTCGCTGCGACTGTGCGTGGGGCGCAAGAGC
GGGCACGAAGCGCAGCTCAAGTTCTGCGCGGGCGTCGTCATCGTGCAGCC
GTACCGCAGCGAGACCACCATCGTGTCGGAGCGCGTGGCGTCCGTGGGCG
CTCACGTCGCCACCGGTGTGCTGCACGCACTCACGTAG
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protein sequence of Ggra8484.t1

>Ggra8484.t1 ID=Ggra8484.t1|Name=Ggra8484.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=346bp
MSSTSSLPDGWQLLSTPSGQPLYYCAATRRTTWQPPQSACAASSCSSQPS
SLRDASSPATPAPPQRFPIGNRQVLTRANNNCHSSSTQHSRQRRASDDSR
YTFPTLVHNTRSRARGYPLFELEREKVLQINLGSTQDAFVWIRCGSMIAR
RGNISFSRQRFRDEGLSSVVKRALTGEGIRMTKCVGRGTIYCASNGRAVC
LVQLRQQSVFVNGDKIMAMSQSVQHDVQLVKGAGMAASGLFAIKVSGSGF
VAFMCEKSAITLQASEEDPVYTDADCTVAWTHAPSLKLDLSLRLCVGRKS
GHEAQLKFCAGVVIVQPYRSETTIVSERVASVGAHVATGVLHALT*
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mRNA from alignment at tig00000041_pilon:851303..852340-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8484.t1 ID=Ggra8484.t1|Name=Ggra8484.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00000041_pilon:851303..852340- (Gracilaria gracilis GNS1m male)
ATGTCTTCCACAAGCTCATTACCTGACGGCTGGCAACTGCTATCCACGCC
GTCCGGACAGCCGCTCTACTACTGCGCCGCCACGCGGCGCACCACCTGGC
AGCCGCCGCAGTCGGCGTGCGCTGCAAGCAGTTGCAGCTCGCAGCCATCG
TCGCTGCGCGACGCGTCATCGCCGGCAACGCCGGCGCCTCCGCAACGCTT
CCCGATCGGAAACAGACAAGTGCTGACGCGCGCCAACAACAACTGCCACT
CGTCGTCGACGCAGCATTCGCGGCAGCGGCGTGCGTCGGACGATTCGCGC
TACACGTTCCCCACGCTGGTGCACAACACGCGCAGTCGCGCGCGCGGCTA
CCCGCTGTTCGAGCTGGAGCGCGAGAAGGTGCTGCAGATCAATCTGGGCA
GCACGCAGGATGCGTTTGTGTGGATCCGATGCGGCAGCATGATCGCGCGT
CGTGGAAACATCTCCTTCTCCAGACAGCGCTTCCGCGACGAGGGGCTGTC
CAGCGTGGTGAAGCGCGCGTTGACGGGCGAGGGCATTCGCATGACCAAGT
GCGTGGGCCGGGGCACGATTTACTGCGCGTCCAACGGGCGCGCGGTGTGC
TTGGTGCAGCTGCGGCAGCAGAGCGTGTTCGTGAACGGCGACAAGATCAT
GGCCATGTCGCAGTCGGTGCAGCACGACGTGCAGCTGGTGAAGGGCGCCG
GCATGGCGGCCTCCGGGCTGTTCGCCATCAAGGTGAGCGGCAGCGGCTTT
GTGGCGTTCATGTGCGAGAAGTCGGCCATCACGCTGCAGGCGAGCGAGGA
GGACCCGGTGTACACGGACGCGGACTGCACGGTGGCGTGGACGCACGCGC
CTTCGCTCAAGCTGGACCTGTCGCTGCGACTGTGCGTGGGGCGCAAGAGC
GGGCACGAAGCGCAGCTCAAGTTCTGCGCGGGCGTCGTCATCGTGCAGCC
GTACCGCAGCGAGACCACCATCGTGTCGGAGCGCGTGGCGTCCGTGGGCG
CTCACGTCGCCACCGGTGTGCTGCACGCACTCACGTAG
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Coding sequence (CDS) from alignment at tig00000041_pilon:851303..852340-

>Ggra8484.t1 ID=Ggra8484.t1|Name=Ggra8484.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1038bp|location=Sequence derived from alignment at tig00000041_pilon:851303..852340- (Gracilaria gracilis GNS1m male)
ATGTCTTCCACAAGCTCATTACCTGACGGCTGGCAACTGCTATCCACGCC
GTCCGGACAGCCGCTCTACTACTGCGCCGCCACGCGGCGCACCACCTGGC
AGCCGCCGCAGTCGGCGTGCGCTGCAAGCAGTTGCAGCTCGCAGCCATCG
TCGCTGCGCGACGCGTCATCGCCGGCAACGCCGGCGCCTCCGCAACGCTT
CCCGATCGGAAACAGACAAGTGCTGACGCGCGCCAACAACAACTGCCACT
CGTCGTCGACGCAGCATTCGCGGCAGCGGCGTGCGTCGGACGATTCGCGC
TACACGTTCCCCACGCTGGTGCACAACACGCGCAGTCGCGCGCGCGGCTA
CCCGCTGTTCGAGCTGGAGCGCGAGAAGGTGCTGCAGATCAATCTGGGCA
GCACGCAGGATGCGTTTGTGTGGATCCGATGCGGCAGCATGATCGCGCGT
CGTGGAAACATCTCCTTCTCCAGACAGCGCTTCCGCGACGAGGGGCTGTC
CAGCGTGGTGAAGCGCGCGTTGACGGGCGAGGGCATTCGCATGACCAAGT
GCGTGGGCCGGGGCACGATTTACTGCGCGTCCAACGGGCGCGCGGTGTGC
TTGGTGCAGCTGCGGCAGCAGAGCGTGTTCGTGAACGGCGACAAGATCAT
GGCCATGTCGCAGTCGGTGCAGCACGACGTGCAGCTGGTGAAGGGCGCCG
GCATGGCGGCCTCCGGGCTGTTCGCCATCAAGGTGAGCGGCAGCGGCTTT
GTGGCGTTCATGTGCGAGAAGTCGGCCATCACGCTGCAGGCGAGCGAGGA
GGACCCGGTGTACACGGACGCGGACTGCACGGTGGCGTGGACGCACGCGC
CTTCGCTCAAGCTGGACCTGTCGCTGCGACTGTGCGTGGGGCGCAAGAGC
GGGCACGAAGCGCAGCTCAAGTTCTGCGCGGGCGTCGTCATCGTGCAGCC
GTACCGCAGCGAGACCACCATCGTGTCGGAGCGCGTGGCGTCCGTGGGCG
CTCACGTCGCCACCGGTGTGCTGCACGCACTCACGTAG
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