Ggra1115.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1115.t1
Unique NameGgra1115.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length349
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000945_piloncontigtig00000945_pilon:81003..82049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1115Ggra1115Gracilaria gracilis GNS1m malegenetig00000945_pilon 81003..82049 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1115.t1.start1Ggra1115.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000945_pilon 81003..81005 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1115.t1.CDS1Ggra1115.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000945_pilon 81003..82049 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1115.t1.exon1Ggra1115.t1.exon1Gracilaria gracilis GNS1m maleexontig00000945_pilon 81003..82049 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1115.t1.stop1Ggra1115.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000945_pilon 82047..82049 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1115.t1Ggra1115.t1Gracilaria gracilis GNS1m malepolypeptidetig00000945_pilon 81003..82049 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1115.t1 ID=Ggra1115.t1|Name=Ggra1115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=349bp
MSRSIPRTPRNEQFFALSQALFERGDMDQSSCGAQRPDIEQCIKRCNSPG
LQERDGCCCIIDNATFFIGVRGGCRYNQRIQNFTQSFIYKSTPINSDKPY
FDRFTCAFTDENANADSCTCTLQWEASPDTLQLTSPIPSPSSSPSPVLSP
PMSIPPIKTPEPMDTPTVEPTVQPTTVPTIVTPPTAIATASPSPSEPAPT
EPELTPFADADAAEPSPSPDGDDDDDDGSVCVAHSYLTERRFGAQQLVHG
GDGVMSAVLCPQHADLPCASAHHKVRYHGRDLSYRQLCEYVRCVPDRMLV
NSVFSHAWREVQHGDVVLTMFDARYAEAPQKALHALMHKLRVVRQRWM*
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spliced messenger RNA

>Ggra1115.t1 ID=Ggra1115.t1|Name=Ggra1115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00000945_pilon:81003..82049+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCAGCATCCCGCGCACGCCGCGAAACGAGCAGTTCTTCGCGCT
GTCGCAGGCGCTCTTCGAGCGCGGCGACATGGATCAGTCGTCGTGCGGCG
CGCAACGCCCGGACATTGAGCAGTGTATCAAGCGCTGCAACTCGCCCGGT
CTGCAGGAGCGCGACGGCTGTTGCTGCATCATCGACAACGCCACCTTCTT
CATCGGCGTGCGTGGTGGTTGTCGTTACAACCAGCGCATCCAAAACTTCA
CGCAGTCCTTCATCTACAAGAGCACGCCCATCAACTCGGACAAGCCCTAC
TTTGACCGCTTCACGTGCGCCTTCACCGACGAGAACGCCAACGCCGACAG
CTGCACCTGCACGCTGCAGTGGGAGGCGTCGCCCGACACGCTGCAGCTCA
CGTCGCCCATTCCGTCGCCGTCCAGCTCGCCGTCGCCGGTGCTGTCGCCG
CCCATGAGTATACCGCCCATCAAGACGCCCGAGCCCATGGACACGCCCAC
CGTGGAGCCCACCGTGCAACCGACCACTGTGCCGAccatcgtcacgccgc
ccaccgccatcgccaccgcgtcgccctcgccctccgaacccgcgcccacc
gagcctgagttgacgccgttcgccgacgccgacgccgccgagccgtcgcc
gtcgcccgacggcgacgacgacgatgacgacggctccgTGTGCGTGGCGC
ACTCGTACCTGACGGAGCGGCGCTTCGGCGCGCAGCAGCTGGTGCACGGC
GGCGACGGCGTCATGTCGGCCGTGCTGTGCCCGCAGCACGCCGATCTGCC
GTGCGCGTCGGCGCACCACAAGGTGCGCTACCACGGGCGCGACCTCAGCT
ACCGCCAGCTGTGCGAGTACGTGCGCTGCGTGCCCGACCGCATGCTGGTC
AACTCGGTGTTCTCGCACGCGTGGCGCGAGGTGCAGCACGGCGACGTGGT
GCTCACCATGTTCGACGCGCGCTACGCTGAGGCGCCGCAAAAGGCATTGC
ACGCGCTCATGCACAAGCTGCGCGTCGTGCGCCAGCGTTGGATGTAG
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protein sequence of Ggra1115.t1

>Ggra1115.t1 ID=Ggra1115.t1|Name=Ggra1115.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=349bp
MSRSIPRTPRNEQFFALSQALFERGDMDQSSCGAQRPDIEQCIKRCNSPG
LQERDGCCCIIDNATFFIGVRGGCRYNQRIQNFTQSFIYKSTPINSDKPY
FDRFTCAFTDENANADSCTCTLQWEASPDTLQLTSPIPSPSSSPSPVLSP
PMSIPPIKTPEPMDTPTVEPTVQPTTVPTIVTPPTAIATASPSPSEPAPT
EPELTPFADADAAEPSPSPDGDDDDDDGSVCVAHSYLTERRFGAQQLVHG
GDGVMSAVLCPQHADLPCASAHHKVRYHGRDLSYRQLCEYVRCVPDRMLV
NSVFSHAWREVQHGDVVLTMFDARYAEAPQKALHALMHKLRVVRQRWM*
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mRNA from alignment at tig00000945_pilon:81003..82049+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1115.t1 ID=Ggra1115.t1|Name=Ggra1115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00000945_pilon:81003..82049+ (Gracilaria gracilis GNS1m male)
ATGTCGCGCAGCATCCCGCGCACGCCGCGAAACGAGCAGTTCTTCGCGCT
GTCGCAGGCGCTCTTCGAGCGCGGCGACATGGATCAGTCGTCGTGCGGCG
CGCAACGCCCGGACATTGAGCAGTGTATCAAGCGCTGCAACTCGCCCGGT
CTGCAGGAGCGCGACGGCTGTTGCTGCATCATCGACAACGCCACCTTCTT
CATCGGCGTGCGTGGTGGTTGTCGTTACAACCAGCGCATCCAAAACTTCA
CGCAGTCCTTCATCTACAAGAGCACGCCCATCAACTCGGACAAGCCCTAC
TTTGACCGCTTCACGTGCGCCTTCACCGACGAGAACGCCAACGCCGACAG
CTGCACCTGCACGCTGCAGTGGGAGGCGTCGCCCGACACGCTGCAGCTCA
CGTCGCCCATTCCGTCGCCGTCCAGCTCGCCGTCGCCGGTGCTGTCGCCG
CCCATGAGTATACCGCCCATCAAGACGCCCGAGCCCATGGACACGCCCAC
CGTGGAGCCCACCGTGCAACCGACCACTGTGCCGAccatcgtcacgccgc
ccaccgccatcgccaccgcgtcgccctcgccctccgaacccgcgcccacc
gagcctgagttgacgccgttcgccgacgccgacgccgccgagccgtcgcc
gtcgcccgacggcgacgacgacgatgacgacggctccgTGTGCGTGGCGC
ACTCGTACCTGACGGAGCGGCGCTTCGGCGCGCAGCAGCTGGTGCACGGC
GGCGACGGCGTCATGTCGGCCGTGCTGTGCCCGCAGCACGCCGATCTGCC
GTGCGCGTCGGCGCACCACAAGGTGCGCTACCACGGGCGCGACCTCAGCT
ACCGCCAGCTGTGCGAGTACGTGCGCTGCGTGCCCGACCGCATGCTGGTC
AACTCGGTGTTCTCGCACGCGTGGCGCGAGGTGCAGCACGGCGACGTGGT
GCTCACCATGTTCGACGCGCGCTACGCTGAGGCGCCGCAAAAGGCATTGC
ACGCGCTCATGCACAAGCTGCGCGTCGTGCGCCAGCGTTGGATGTAG
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Coding sequence (CDS) from alignment at tig00000945_pilon:81003..82049+

>Ggra1115.t1 ID=Ggra1115.t1|Name=Ggra1115.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1047bp|location=Sequence derived from alignment at tig00000945_pilon:81003..82049+ (Gracilaria gracilis GNS1m male)
ATGTCGCGCAGCATCCCGCGCACGCCGCGAAACGAGCAGTTCTTCGCGCT
GTCGCAGGCGCTCTTCGAGCGCGGCGACATGGATCAGTCGTCGTGCGGCG
CGCAACGCCCGGACATTGAGCAGTGTATCAAGCGCTGCAACTCGCCCGGT
CTGCAGGAGCGCGACGGCTGTTGCTGCATCATCGACAACGCCACCTTCTT
CATCGGCGTGCGTGGTGGTTGTCGTTACAACCAGCGCATCCAAAACTTCA
CGCAGTCCTTCATCTACAAGAGCACGCCCATCAACTCGGACAAGCCCTAC
TTTGACCGCTTCACGTGCGCCTTCACCGACGAGAACGCCAACGCCGACAG
CTGCACCTGCACGCTGCAGTGGGAGGCGTCGCCCGACACGCTGCAGCTCA
CGTCGCCCATTCCGTCGCCGTCCAGCTCGCCGTCGCCGGTGCTGTCGCCG
CCCATGAGTATACCGCCCATCAAGACGCCCGAGCCCATGGACACGCCCAC
CGTGGAGCCCACCGTGCAACCGACCACTGTGCCGAccatcgtcacgccgc
ccaccgccatcgccaccgcgtcgccctcgccctccgaacccgcgcccacc
gagcctgagttgacgccgttcgccgacgccgacgccgccgagccgtcgcc
gtcgcccgacggcgacgacgacgatgacgacggctccgTGTGCGTGGCGC
ACTCGTACCTGACGGAGCGGCGCTTCGGCGCGCAGCAGCTGGTGCACGGC
GGCGACGGCGTCATGTCGGCCGTGCTGTGCCCGCAGCACGCCGATCTGCC
GTGCGCGTCGGCGCACCACAAGGTGCGCTACCACGGGCGCGACCTCAGCT
ACCGCCAGCTGTGCGAGTACGTGCGCTGCGTGCCCGACCGCATGCTGGTC
AACTCGGTGTTCTCGCACGCGTGGCGCGAGGTGCAGCACGGCGACGTGGT
GCTCACCATGTTCGACGCGCGCTACGCTGAGGCGCCGCAAAAGGCATTGC
ACGCGCTCATGCACAAGCTGCGCGTCGTGCGCCAGCGTTGGATGTAG
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