Ggra1101.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1101.t1
Unique Name	Ggra1101.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	546

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000945_pilon	contig	tig00000945_pilon:48050..49687 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1101	Ggra1101	Gracilaria gracilis GNS1m male	gene	tig00000945_pilon 48050..49687 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1101.t1.start1	Ggra1101.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000945_pilon 48050..48052 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1101.t1.CDS1	Ggra1101.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000945_pilon 48050..49687 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1101.t1.exon1	Ggra1101.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000945_pilon 48050..49687 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1101.t1.stop1	Ggra1101.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000945_pilon 49685..49687 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1101.t1	Ggra1101.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000945_pilon 48050..49687 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000945_pilon:48050..49687+
coding sequence from alignment at tig00000945_pilon:48050..49687+

mRNA sequence

>Ggra1101.t1 ID=Ggra1101.t1|Name=Ggra1101.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=546bp
MGVRGASPSNNLYNHYQQPSPTSCMKSLPQKSAPTSPTVRDALPPSRTSP
STSAPKPAHPTPPPLQLPDPSQPPERPPPRLSSTFVSPQTVPSLGQPHYA
QLREQQDASAPFGQTLLAATSHSEAQPQPARSLSLRARLQKVQEQVPPTP
DSPDELDTIEIRFYPFPPPRHPLTYPLPTSASSFSSKPLGAHGFCSAANE
KVALRKRLLRRWRNEKASESLSAPDRSHVELPSNGLKRAQSATNTAKRKR
TRTSYEDEDDDQQGKAVVSTSNTHSDGFRGKRARNGDDTGKRTLPSSPSA
HHVDDNERQYAGARMPLSFEEQIRFKLGCERKEGAVDANRALPSPTFGDG
SNCRGSRIHSPRNVQSRQGMLNSSRAMQVQPQLYAKSNGQFSSSSLQQLQ
QQIDALKQRRLRLEDNQYKEISRKAAEMCLNSATKEQRLRLKSDIEKLSP
RAIRDMLLHISRRCRGFRVVDHEEVQLQVDLLPPELVGELELIVMLDKGE
IELDSHAELQKVRTKLWNGLEEYRSMLNNLNKSEANGTCTNGLHR*

spliced messenger RNA

>Ggra1101.t1 ID=Ggra1101.t1|Name=Ggra1101.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000945_pilon:48050..49687+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGTTAGGGGCGCCTCTCCCTCCAATAATCTCTATAATCACTACCA
ACAGCCGTCTCCAACGTCTTGCATGAAGTCGTTACCACAAAAGTCTGCTC
CAACATCGCCTACCGTTCGCGATGCACTTCCACCCTCCCGCACCTCGCCG
TCCACATCCGCACCCAAACCAGCACATCCCACTCCACCTCCGCTACAACT
TCCTGACCCCTCGCAGCCGCCCGAGCGACCACCGCCCCGACTTTCCTCAA
CCTTCGTCTCGCCACAAACTGTCCCCTCACTTGGGCAGCCTCACTATGCT
CAGCTGAGAGAGCAACAGGACGCCTCTGCGCCTTTTGGTCAAACGTTGCT
TGCCGCCACCTCTCACTCAGAAGCCCAGCCACAACCAGCGCGTTCGCTCT
CACTGAGAGCTCGACTTCAGAAGGTCCAGGAACAAGTACCACCCACTCCT
GACTCCCCCGATGAGCTGGACACCATCGAAATACGTTTCTATCCCTTTCC
CCCTCCTCGTCACCCGTTGACATATCCTCTACCAACCTCAGCTTCTTCAT
TCTCGAGCAAACCTCTCGGCGCGCATGGGTTCTGTTCTGCTGCAAATGAA
AAGGTCGCACTTCGCAAGCGATTGCTTAGACGGTGGCGCAACGAGAAAGC
ATCAGAGTCGCTGTCAGCACCAGATCGCTCTCACGTCGAGCTGCCTTCAA
ATGGACTGAAGAGAGCGCAGTCAGCCACAAATACAGCGAAACGTAAGAGA
ACCCGCACTTCATACGAAGATGAGGATGATGACCAACAAGGAAAGGCTGT
GGTGTCGACATCGAACACTCATAGCGATGGCTTCAGAGGCAAGCGGGCAC
GAAATGGCGACGATACCGGAAAGCGCACCCTCCCATCATCGCCTTCCGCC
CACCATGTCGACGACAATGAGCGTCAGTACGCAGGGGCAAGGATGCCACT
GAGTTTTGAAGAGCAAATACGTTTCAAGTTGGGATGTGAGAGGAAGGAAG
GAGCCGTTGATGCTAATCGTGCACTTCCATCCCCCACTTTTGGAGATGGG
AGCAATTGTCGAGGTTCAAGGATTCATTCGCCGAGAAATGTACAGTCCAG
GCAAGGAATGCTGAACTCGTCCCGTGCGATGCAGGTGCAGCCGCAATTGT
ACGCCAAGTCAAACGGCCAGTTCTCTTCATCCAGCCTTCAACAATTACAA
CAGCAAATAGATGCTTTGAAACAACGCCGACTTCGTTTGGAAGATAATCA
ATACAAAGAGATTTCTCGCAAAGCAGCAGAAATGTGTTTGAATTCGGCGA
CAAAAGAGCAGCGATTGCGCCTCAAGTCGGATATAGAGAAGCTATCTCCC
AGAGCCATTCGAGACATGTTGCTTCATATCTCCCGGCGATGTAGGGGGTT
CCGGGTGGTCGACCACGAGGAAGTGCAATTGCAAGTTGACTTGCTACCGC
CTGAACTTGTTGGAGAGTTGGAACTCATAGTAATGCTGGACAAGGGCGAG
ATAGAACTCGACAGCCACGCTGAGTTGCAAAAGGTGCGGACAAAGCTTTG
GAATGGTTTAGAAGAGTATCGAAGCATGCTGAATAATCTAAACAAATCGG
AAGCTAACGGAACTTGCACGAATGGTCTGCACAGATGA

protein sequence of Ggra1101.t1

>Ggra1101.t1 ID=Ggra1101.t1|Name=Ggra1101.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=546bp
MGVRGASPSNNLYNHYQQPSPTSCMKSLPQKSAPTSPTVRDALPPSRTSP
STSAPKPAHPTPPPLQLPDPSQPPERPPPRLSSTFVSPQTVPSLGQPHYA
QLREQQDASAPFGQTLLAATSHSEAQPQPARSLSLRARLQKVQEQVPPTP
DSPDELDTIEIRFYPFPPPRHPLTYPLPTSASSFSSKPLGAHGFCSAANE
KVALRKRLLRRWRNEKASESLSAPDRSHVELPSNGLKRAQSATNTAKRKR
TRTSYEDEDDDQQGKAVVSTSNTHSDGFRGKRARNGDDTGKRTLPSSPSA
HHVDDNERQYAGARMPLSFEEQIRFKLGCERKEGAVDANRALPSPTFGDG
SNCRGSRIHSPRNVQSRQGMLNSSRAMQVQPQLYAKSNGQFSSSSLQQLQ
QQIDALKQRRLRLEDNQYKEISRKAAEMCLNSATKEQRLRLKSDIEKLSP
RAIRDMLLHISRRCRGFRVVDHEEVQLQVDLLPPELVGELELIVMLDKGE
IELDSHAELQKVRTKLWNGLEEYRSMLNNLNKSEANGTCTNGLHR*

mRNA from alignment at tig00000945_pilon:48050..49687+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1101.t1 ID=Ggra1101.t1|Name=Ggra1101.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00000945_pilon:48050..49687+ (Gracilaria gracilis GNS1m male)
ATGGGCGTTAGGGGCGCCTCTCCCTCCAATAATCTCTATAATCACTACCA
ACAGCCGTCTCCAACGTCTTGCATGAAGTCGTTACCACAAAAGTCTGCTC
CAACATCGCCTACCGTTCGCGATGCACTTCCACCCTCCCGCACCTCGCCG
TCCACATCCGCACCCAAACCAGCACATCCCACTCCACCTCCGCTACAACT
TCCTGACCCCTCGCAGCCGCCCGAGCGACCACCGCCCCGACTTTCCTCAA
CCTTCGTCTCGCCACAAACTGTCCCCTCACTTGGGCAGCCTCACTATGCT
CAGCTGAGAGAGCAACAGGACGCCTCTGCGCCTTTTGGTCAAACGTTGCT
TGCCGCCACCTCTCACTCAGAAGCCCAGCCACAACCAGCGCGTTCGCTCT
CACTGAGAGCTCGACTTCAGAAGGTCCAGGAACAAGTACCACCCACTCCT
GACTCCCCCGATGAGCTGGACACCATCGAAATACGTTTCTATCCCTTTCC
CCCTCCTCGTCACCCGTTGACATATCCTCTACCAACCTCAGCTTCTTCAT
TCTCGAGCAAACCTCTCGGCGCGCATGGGTTCTGTTCTGCTGCAAATGAA
AAGGTCGCACTTCGCAAGCGATTGCTTAGACGGTGGCGCAACGAGAAAGC
ATCAGAGTCGCTGTCAGCACCAGATCGCTCTCACGTCGAGCTGCCTTCAA
ATGGACTGAAGAGAGCGCAGTCAGCCACAAATACAGCGAAACGTAAGAGA
ACCCGCACTTCATACGAAGATGAGGATGATGACCAACAAGGAAAGGCTGT
GGTGTCGACATCGAACACTCATAGCGATGGCTTCAGAGGCAAGCGGGCAC
GAAATGGCGACGATACCGGAAAGCGCACCCTCCCATCATCGCCTTCCGCC
CACCATGTCGACGACAATGAGCGTCAGTACGCAGGGGCAAGGATGCCACT
GAGTTTTGAAGAGCAAATACGTTTCAAGTTGGGATGTGAGAGGAAGGAAG
GAGCCGTTGATGCTAATCGTGCACTTCCATCCCCCACTTTTGGAGATGGG
AGCAATTGTCGAGGTTCAAGGATTCATTCGCCGAGAAATGTACAGTCCAG
GCAAGGAATGCTGAACTCGTCCCGTGCGATGCAGGTGCAGCCGCAATTGT
ACGCCAAGTCAAACGGCCAGTTCTCTTCATCCAGCCTTCAACAATTACAA
CAGCAAATAGATGCTTTGAAACAACGCCGACTTCGTTTGGAAGATAATCA
ATACAAAGAGATTTCTCGCAAAGCAGCAGAAATGTGTTTGAATTCGGCGA
CAAAAGAGCAGCGATTGCGCCTCAAGTCGGATATAGAGAAGCTATCTCCC
AGAGCCATTCGAGACATGTTGCTTCATATCTCCCGGCGATGTAGGGGGTT
CCGGGTGGTCGACCACGAGGAAGTGCAATTGCAAGTTGACTTGCTACCGC
CTGAACTTGTTGGAGAGTTGGAACTCATAGTAATGCTGGACAAGGGCGAG
ATAGAACTCGACAGCCACGCTGAGTTGCAAAAGGTGCGGACAAAGCTTTG
GAATGGTTTAGAAGAGTATCGAAGCATGCTGAATAATCTAAACAAATCGG
AAGCTAACGGAACTTGCACGAATGGTCTGCACAGATGA

Coding sequence (CDS) from alignment at tig00000945_pilon:48050..49687+

>Ggra1101.t1 ID=Ggra1101.t1|Name=Ggra1101.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1638bp|location=Sequence derived from alignment at tig00000945_pilon:48050..49687+ (Gracilaria gracilis GNS1m male)
ATGGGCGTTAGGGGCGCCTCTCCCTCCAATAATCTCTATAATCACTACCA
ACAGCCGTCTCCAACGTCTTGCATGAAGTCGTTACCACAAAAGTCTGCTC
CAACATCGCCTACCGTTCGCGATGCACTTCCACCCTCCCGCACCTCGCCG
TCCACATCCGCACCCAAACCAGCACATCCCACTCCACCTCCGCTACAACT
TCCTGACCCCTCGCAGCCGCCCGAGCGACCACCGCCCCGACTTTCCTCAA
CCTTCGTCTCGCCACAAACTGTCCCCTCACTTGGGCAGCCTCACTATGCT
CAGCTGAGAGAGCAACAGGACGCCTCTGCGCCTTTTGGTCAAACGTTGCT
TGCCGCCACCTCTCACTCAGAAGCCCAGCCACAACCAGCGCGTTCGCTCT
CACTGAGAGCTCGACTTCAGAAGGTCCAGGAACAAGTACCACCCACTCCT
GACTCCCCCGATGAGCTGGACACCATCGAAATACGTTTCTATCCCTTTCC
CCCTCCTCGTCACCCGTTGACATATCCTCTACCAACCTCAGCTTCTTCAT
TCTCGAGCAAACCTCTCGGCGCGCATGGGTTCTGTTCTGCTGCAAATGAA
AAGGTCGCACTTCGCAAGCGATTGCTTAGACGGTGGCGCAACGAGAAAGC
ATCAGAGTCGCTGTCAGCACCAGATCGCTCTCACGTCGAGCTGCCTTCAA
ATGGACTGAAGAGAGCGCAGTCAGCCACAAATACAGCGAAACGTAAGAGA
ACCCGCACTTCATACGAAGATGAGGATGATGACCAACAAGGAAAGGCTGT
GGTGTCGACATCGAACACTCATAGCGATGGCTTCAGAGGCAAGCGGGCAC
GAAATGGCGACGATACCGGAAAGCGCACCCTCCCATCATCGCCTTCCGCC
CACCATGTCGACGACAATGAGCGTCAGTACGCAGGGGCAAGGATGCCACT
GAGTTTTGAAGAGCAAATACGTTTCAAGTTGGGATGTGAGAGGAAGGAAG
GAGCCGTTGATGCTAATCGTGCACTTCCATCCCCCACTTTTGGAGATGGG
AGCAATTGTCGAGGTTCAAGGATTCATTCGCCGAGAAATGTACAGTCCAG
GCAAGGAATGCTGAACTCGTCCCGTGCGATGCAGGTGCAGCCGCAATTGT
ACGCCAAGTCAAACGGCCAGTTCTCTTCATCCAGCCTTCAACAATTACAA
CAGCAAATAGATGCTTTGAAACAACGCCGACTTCGTTTGGAAGATAATCA
ATACAAAGAGATTTCTCGCAAAGCAGCAGAAATGTGTTTGAATTCGGCGA
CAAAAGAGCAGCGATTGCGCCTCAAGTCGGATATAGAGAAGCTATCTCCC
AGAGCCATTCGAGACATGTTGCTTCATATCTCCCGGCGATGTAGGGGGTT
CCGGGTGGTCGACCACGAGGAAGTGCAATTGCAAGTTGACTTGCTACCGC
CTGAACTTGTTGGAGAGTTGGAACTCATAGTAATGCTGGACAAGGGCGAG
ATAGAACTCGACAGCCACGCTGAGTTGCAAAAGGTGCGGACAAAGCTTTG
GAATGGTTTAGAAGAGTATCGAAGCATGCTGAATAATCTAAACAAATCGG
AAGCTAACGGAACTTGCACGAATGGTCTGCACAGATGA