Ggra4623.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4623.t1
Unique Name	Ggra4623.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	295

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000941_pilon	contig	tig00000941_pilon:161595..162479 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1166018.FAES_0052
PFAMs	PhzC-PhzF
Max annot lvl	976\|Bacteroidetes
Evalue	5.29e-49
EggNOG OGs	COG0384@1\|root,COG0384@2\|Bacteria,4NEWM@976\|Bacteroidetes,47JVW@768503\|Cytophagia
Description	phenazine biosynthesis protein PhzF family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4623	Ggra4623	Gracilaria gracilis GNS1m male	gene	tig00000941_pilon 161595..162479 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4623.t1.start1	Ggra4623.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000941_pilon 161595..161597 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4623.t1.CDS1	Ggra4623.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000941_pilon 161595..162479 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4623.t1.exon1	Ggra4623.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000941_pilon 161595..162479 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4623.t1.stop1	Ggra4623.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000941_pilon 162477..162479 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4623.t1	Ggra4623.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000941_pilon 161595..162479 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000941_pilon:161595..162479+
coding sequence from alignment at tig00000941_pilon:161595..162479+

mRNA sequence

>Ggra4623.t1 ID=Ggra4623.t1|Name=Ggra4623.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=295bp
MLNSFTSLSLYVVDAFVPPETKTLGKGNPAAVVPLTREQAENLSDEQMQT
VATELGLSETTYVYPAQGEGAFYIRWFTPSQEVELCGHATLAAAYVLYLE
NQPLLGWSTTEFITIRDEKLKVAKSDQGDEGLPTFQMQFPALLRKDSLTK
SEEQTLAHGLGIPKEEISLCYRSDYDFVAMLTERTTVAKLKPLMDTLSTL
NVRGVIVTAPCTGKARFVSRYFAPGAGVPEDPVTGSAHCALAPLYLKPNQ
DDGKFFRAEQLSRRSGVVMVRMISKDQVELQGRVRLVSKGILYL*

spliced messenger RNA

>Ggra4623.t1 ID=Ggra4623.t1|Name=Ggra4623.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000941_pilon:161595..162479+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAAACTCATTTACGTCTCTTTCTCTATACGTTGTGGATGCGTTTGT
TCCACCAGAGACAAAAACCTTGGGAAAAGGAAACCCTGCAGCCGTTGTAC
CACTGACAAGAGAACAAGCCGAAAATCTCAGTGATGAGCAAATGCAAACC
GTGGCTACCGAATTGGGTCTATCGGAAACGACTTATGTGTATCCTGCGCA
AGGTGAGGGGGCTTTTTACATCCGCTGGTTTACGCCTTCCCAGGAAGTTG
AACTTTGTGGCCATGCGACTCTCGCTGCTGCCTATGTGTTATATTTGGAA
AACCAACCACTGTTGGGGTGGTCAACTACGGAATTCATAACAATCAGAGA
TGAAAAACTGAAGGTTGCGAAAAGTGATCAAGGCGATGAGGGGCTCCCAA
CATTTCAAATGCAATTCCCTGCCCTATTAAGGAAAGACAGCCTGACCAAA
TCCGAAGAGCAGACATTAGCTCATGGTCTAGGAATTCCGAAGGAAGAAAT
TAGTCTCTGCTATCGTTCCGATTATGACTTTGTTGCGATGCTTACGGAAC
GCACGACAGTAGCAAAACTGAAGCCTTTAATGGACACTCTTTCAACACTT
AACGTAAGAGGGGTTATTGTAACTGCACCATGTACAGGAAAGGCACGCTT
CGTTAGCCGATACTTTGCACCAGGCGCCGGAGTACCGGAAGACCCGGTTA
CGGGGAGTGCCCATTGCGCACTCGCACCGCTGTACCTCAAACCAAATCAA
GATGACGGCAAGTTTTTCCGTGCTGAACAATTATCAAGAAGGAGCGGCGT
CGTAATGGTTCGTATGATATCTAAGGATCAAGTCGAACTACAGGGAAGAG
TTCGTCTGGTCAGCAAGGGAATTCTATATCTGTGA

protein sequence of Ggra4623.t1

>Ggra4623.t1 ID=Ggra4623.t1|Name=Ggra4623.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=295bp
MLNSFTSLSLYVVDAFVPPETKTLGKGNPAAVVPLTREQAENLSDEQMQT
VATELGLSETTYVYPAQGEGAFYIRWFTPSQEVELCGHATLAAAYVLYLE
NQPLLGWSTTEFITIRDEKLKVAKSDQGDEGLPTFQMQFPALLRKDSLTK
SEEQTLAHGLGIPKEEISLCYRSDYDFVAMLTERTTVAKLKPLMDTLSTL
NVRGVIVTAPCTGKARFVSRYFAPGAGVPEDPVTGSAHCALAPLYLKPNQ
DDGKFFRAEQLSRRSGVVMVRMISKDQVELQGRVRLVSKGILYL*

mRNA from alignment at tig00000941_pilon:161595..162479+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4623.t1 ID=Ggra4623.t1|Name=Ggra4623.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000941_pilon:161595..162479+ (Gracilaria gracilis GNS1m male)
ATGTTAAACTCATTTACGTCTCTTTCTCTATACGTTGTGGATGCGTTTGT
TCCACCAGAGACAAAAACCTTGGGAAAAGGAAACCCTGCAGCCGTTGTAC
CACTGACAAGAGAACAAGCCGAAAATCTCAGTGATGAGCAAATGCAAACC
GTGGCTACCGAATTGGGTCTATCGGAAACGACTTATGTGTATCCTGCGCA
AGGTGAGGGGGCTTTTTACATCCGCTGGTTTACGCCTTCCCAGGAAGTTG
AACTTTGTGGCCATGCGACTCTCGCTGCTGCCTATGTGTTATATTTGGAA
AACCAACCACTGTTGGGGTGGTCAACTACGGAATTCATAACAATCAGAGA
TGAAAAACTGAAGGTTGCGAAAAGTGATCAAGGCGATGAGGGGCTCCCAA
CATTTCAAATGCAATTCCCTGCCCTATTAAGGAAAGACAGCCTGACCAAA
TCCGAAGAGCAGACATTAGCTCATGGTCTAGGAATTCCGAAGGAAGAAAT
TAGTCTCTGCTATCGTTCCGATTATGACTTTGTTGCGATGCTTACGGAAC
GCACGACAGTAGCAAAACTGAAGCCTTTAATGGACACTCTTTCAACACTT
AACGTAAGAGGGGTTATTGTAACTGCACCATGTACAGGAAAGGCACGCTT
CGTTAGCCGATACTTTGCACCAGGCGCCGGAGTACCGGAAGACCCGGTTA
CGGGGAGTGCCCATTGCGCACTCGCACCGCTGTACCTCAAACCAAATCAA
GATGACGGCAAGTTTTTCCGTGCTGAACAATTATCAAGAAGGAGCGGCGT
CGTAATGGTTCGTATGATATCTAAGGATCAAGTCGAACTACAGGGAAGAG
TTCGTCTGGTCAGCAAGGGAATTCTATATCTGTGA

Coding sequence (CDS) from alignment at tig00000941_pilon:161595..162479+

>Ggra4623.t1 ID=Ggra4623.t1|Name=Ggra4623.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00000941_pilon:161595..162479+ (Gracilaria gracilis GNS1m male)
ATGTTAAACTCATTTACGTCTCTTTCTCTATACGTTGTGGATGCGTTTGT
TCCACCAGAGACAAAAACCTTGGGAAAAGGAAACCCTGCAGCCGTTGTAC
CACTGACAAGAGAACAAGCCGAAAATCTCAGTGATGAGCAAATGCAAACC
GTGGCTACCGAATTGGGTCTATCGGAAACGACTTATGTGTATCCTGCGCA
AGGTGAGGGGGCTTTTTACATCCGCTGGTTTACGCCTTCCCAGGAAGTTG
AACTTTGTGGCCATGCGACTCTCGCTGCTGCCTATGTGTTATATTTGGAA
AACCAACCACTGTTGGGGTGGTCAACTACGGAATTCATAACAATCAGAGA
TGAAAAACTGAAGGTTGCGAAAAGTGATCAAGGCGATGAGGGGCTCCCAA
CATTTCAAATGCAATTCCCTGCCCTATTAAGGAAAGACAGCCTGACCAAA
TCCGAAGAGCAGACATTAGCTCATGGTCTAGGAATTCCGAAGGAAGAAAT
TAGTCTCTGCTATCGTTCCGATTATGACTTTGTTGCGATGCTTACGGAAC
GCACGACAGTAGCAAAACTGAAGCCTTTAATGGACACTCTTTCAACACTT
AACGTAAGAGGGGTTATTGTAACTGCACCATGTACAGGAAAGGCACGCTT
CGTTAGCCGATACTTTGCACCAGGCGCCGGAGTACCGGAAGACCCGGTTA
CGGGGAGTGCCCATTGCGCACTCGCACCGCTGTACCTCAAACCAAATCAA
GATGACGGCAAGTTTTTCCGTGCTGAACAATTATCAAGAAGGAGCGGCGT
CGTAATGGTTCGTATGATATCTAAGGATCAAGTCGAACTACAGGGAAGAG
TTCGTCTGGTCAGCAAGGGAATTCTATATCTGTGA