Ggra5790.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5790.t1
Unique NameGgra5790.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length414
Homology
BLAST of Ggra5790.t1 vs. uniprot
Match: A0A2V3J6K8 (CBS domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6K8_9FLOR)

HSP 1 Score: 535 bits (1377), Expect = 2.440e-181
Identity = 297/412 (72.09%), Postives = 339/412 (82.28%), Query Frame = 0
Query:    1 MNVRPGSYGQFVLDVRRRFAGSSSVGANKIKYLNEDKDEILISNDEDLESCFEDYLDMRSKTVFLKVYEAEHVTTSQIQSPVSSNPSSNIGGPRQLLNSVRTEFSSKSSGPASEDSRDXXXXXXXXXXXSSRPVLLTPSQEKGAEAHKRILDGENDEAIALYEEALRLDPDNATAQGGRGGARLFSGNSVGAEEDYRTALHMIENRRGGSVGNLTLQMCIVGLVESLIDQRRYEEAVSAASRIDPSCGNTGCNDAVRDELDSASNAALEALESNEFGEAMSCYSYAIPVETPYLNLLPSETPRALLRLGRTKCYKAMEDYDMALEDYEAAVQIEPESVAGHKGCGXXXXXXXXXXXXXXXXXXXXXXXPADDEVRNEIEVIKRILPDSLDNKKAEIAKLGALLGGMELPGKP 412
            MNV  G++ QFVLD+RRRFAGS SVGA KIKYL+EDKDEILISNDEDLESCFEDY++ R+KT+ L+VYEAEH  TS IQSPVSS PSS IG PRQ  +S R E+S++ +   +E S D            SRP++ TPSQ K AEAH+R+LDG++DEAIALYEEAL LD  NA AQGGRG ARLF GNSVGAEEDYR A+ M+E  +GG  G+LT QMCIVGLVESLIDQRRYEEAVSAASRIDP CGNT C DA R+ELDSASNAA EALE++E+G+AM+CYS AI VE  YL L+PS+ PRA LRLGR KCYKA+EDYDMALEDYE  +++EPESVAGHKGCGXXXXXXXXXXXXXXXXXXXXXXXPADDEV  EI ++K +LPD ++ KKAEIAKLGALLGGM LPGKP
Sbjct:  415 MNVGTGTFDQFVLDIRRRFAGSCSVGAIKIKYLDEDKDEILISNDEDLESCFEDYVESRNKTIHLRVYEAEHANTSHIQSPVSSTPSSVIGSPRQSASSGRKEYSTRRTRSVAEASNDTTTSANEMKRRLSRPIIRTPSQAKAAEAHQRMLDGKHDEAIALYEEALTLDKTNARAQGGRGAARLFCGNSVGAEEDYRAAIQMLEEGKGGVAGDLTFQMCIVGLVESLIDQRRYEEAVSAASRIDPDCGNTECTDAFREELDSASNAAREALEASEYGDAMNCYSNAIRVENAYLKLVPSDAPRASLRLGRAKCYKALEDYDMALEDYETTIELEPESVAGHKGCGXXXXXXXXXXXXXXXXXXXXXXXPADDEVNKEISLLKNLLPDPMEGKKAEIAKLGALLGGMNLPGKP 826          
BLAST of Ggra5790.t1 vs. uniprot
Match: R7QPC9 (TPR repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPC9_CHOCR)

HSP 1 Score: 409 bits (1050), Expect = 1.760e-132
Identity = 238/409 (58.19%), Postives = 306/409 (74.82%), Query Frame = 0
Query:    5 PGSYGQFVLDVRRRFAGSSSVGANKIKYLNEDKDEILISNDEDLESCFEDYLDMRSKTVFLKVYEAEHVTTSQIQSPVSSNPSSNIGGPR-QLLNSVRTEFSSKSSGPASEDSR-DXXXXXXXXXXXSSRPVLLTPSQEKGAEAHKRILDGENDEAIALYEEALRLDPDNATAQGGRGGARLFSGNSVGAEEDYRTALHMIENRRGGSVGNLTLQMCIVGLVESLIDQRRYEEAVSAASRIDPSCGNTGCNDAVRDELDSASNAALEALESNEFGEAMSCYSYAIPVETPYLNLLPSETPRALLRLGRTKCYKAMEDYDMALEDYEAAVQIEPESVAGHKGCGXXXXXXXXXXXXXXXXXXXXXXXPADDEVRNEIEVIKRILPDSLDNKKAEIAKLGALLGGMELPGK 411
            PG++ QFV+D+RRRFAGS++VG  KIKY++ED DE+L+SNDEDL SC+ED+L+ +++T+ L+VY+ E  T+S +QSP+SSN SS +G PR + L +  ++   K    +SE                  +   +TPS  K +EA ++++DG+ ++AIALY +A++ DP+NA A+GGRG A L SG+S GAEEDYR AL ++E  +GG+VG++T QMCIVGLVESLIDQRRYEEA   ++ ID    N GC DA RDELDSA NAA +ALE+ EFG AMSCYS A+ VE+ YL L+  E   A LRLGR KCYKA+ED+DMALEDYEAA  +EPESVA HKG  XXXXXXXXXXXXXXXXXXXXXXX AD++V  E+++I+ +LPD L +KK EIAKLGALLGGM LPGK
Sbjct:  400 PGAFDQFVVDIRRRFAGSANVGPIKIKYVDEDGDEVLLSNDEDLASCYEDFLESKNRTIHLRVYDTERPTSSNLQSPISSNASSMLGSPRPRALPANPSQLDYKQDLLSSETPLVQDKASPAAAQIPEMKQAPITPSMRKASEAQEKMMDGKMEDAIALYNKAIQQDPENARARGGRGAAHLISGDSTGAEEDYRKALDLLEKGKGGNVGDITFQMCIVGLVESLIDQRRYEEAAQVSTSIDSKIDNPGCIDAFRDELDSAGNAARQALEAGEFGVAMSCYSNALRVESAYLQLVEDERGTAGLRLGRAKCYKALEDFDMALEDYEAAALLEPESVAAHKGSXXXXXXXXXXXXXXXXXXXXXXXXXADEDVNKEMQLIRVMLPDPLQSKKEEIAKLGALLGGMNLPGK 808          
BLAST of Ggra5790.t1 vs. uniprot
Match: A0A7S3E9X8 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E9X8_9RHOD)

HSP 1 Score: 142 bits (357), Expect = 4.060e-33
Identity = 124/413 (30.02%), Postives = 193/413 (46.73%), Query Frame = 0
Query:    1 MNVRPGSYGQFVLDVRRRFAGSSSVGANKIKYLNEDKDEILISNDEDLESCFEDYLDMRSKTVFLKVYEAEHVTTSQIQSPVSSNPSSNIGGPRQLLNSVRTEFSSKSSGPASEDSRDXXXXXXXXXXXSSRPVLLTPSQEKGAEAHKRILDGENDEAIALYEEALRLDPDNATAQGGRGGARLFSGNSVGAEEDYRTALHMIENRR---GGSVGNLTLQMCIVGLVESLIDQRRYEEAVSAASRIDPSCGNTGCNDAVRDELDSASNAALEALESNEFGEAMSCYSYAIPVETPYLNLLPSETPRALLRLGRTKCYKAMEDYDMALEDYEAAVQIEPESVAGHKGCGXXXXXXXXXXXXXXXXXXXXXXXPADDE-VRNEIEVIKRILPDSLDNKKAEIAKLGALLGGMELP 409
            M +  GSY +F L++RRR+ G+S     KIKY +++ DE+ IS+DED E C E  L+ + KTV   V E + +T +  ++ +S++          L  S   +  +K  G                    S       +Q+K  EA   + +G    AI  Y+EA+ +DP  A A  GR  A+L    +  A EDY  AL +   R+     S     + +C  G+ E+LI+ RRYEEA    S I  S        A  DEL +  ++A +A  S+   EA+  Y+ AI +++  L        +A L   R +CY A++D +MA EDY  A+Q++PE+     G                         P D++ +++  EV KR+L    D+KK  I+ LG++L  + LP
Sbjct:  359 MRLERGSYDKFQLEIRRRY-GASRSSILKIKYFDDEGDEVRISSDEDFEECIESALENQWKTVKAVVEEVQTLTDTSSRASISAS----------LSYSSLLDLEAKDDG-------------------GSGIATECSAQDKIREAMGLLQNGNVKAAIRCYDEAILIDPSTANAYCGRAAAKLIVHETEQALEDYDRALEICAERQEIVDQSALESFMDVCNSGIAEALIELRRYEEAGKILSSIRSSQCRDETVSAFLDELSACKDSAAKAQLSDACMEAVDLYTSAIRIDST-LEKEIGHPRQAKLLCARGQCYVAVDDVEMAAEDYNLALQVDPENRDALLGRAEALRKLEKYKDSKDAFVTYFKLFPKDEKTIKSFEEVKKRVL--EADSKK--ISDLGSVLKEINLP 736          
BLAST of Ggra5790.t1 vs. uniprot
Match: A0A7S1TD02 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD02_9RHOD)

HSP 1 Score: 85.5 bits (210), Expect = 3.440e-14
Identity = 86/333 (25.83%), Postives = 137/333 (41.14%), Query Frame = 0
Query:   17 RRFAGSSSVGANKIKYLNEDKDEILISNDEDLESCFEDYLDMRSKTVFLKVYEAEHVTTSQIQSPVSSNPSSNIGGPRQLLNSVRTEFSSKSSGPASEDSRDXXXXXXXXXXXSSRPVLLTPSQEKGAEAHKRIL-DGENDEAIALYEEALRLDPDNATAQGGRGGARLFSGNSVGAEEDYRTALHMIENRRGGSVGNLTLQMCIVGLVESLIDQRRYEEAVSAASRIDPSCGNTGCNDAVRDELDSASNAALEALESNEFGEAMSCYSYAIPVE---TPYLNLLPSETPRALLRLGRTKCYKAMEDYDMALEDYEAAVQIEPESVAGHKGCG 345
            RR  G S     K+KYL+ED DE++++ D+DL  C    +D  +KT  +   E                      G     +S+       S  P+   + D             +PV      E   +A  R+L +G+   A+  Y   LR D +N  A  GR  A L       AE DYR A+ ++E      + +        GL E+LI+ +RYEEA+     I+ +        AV +E +  +++A  A+ S +   A+     AI +    +     +P +   +L  L R  CY  +ED ++ALED+  ++QI         G G
Sbjct:  382 RRRCGLSFKSQIKVKYLDEDNDEVMLACDDDLAECGR-VMDRLAKTAIILKVETR--------------------GGEDASDSISEVSRVNSPTPSDHGTIDLSP---------EKPVKEGREIELLLQAGHRLLQEGDIAGAVDHYSNLLRRDANNTLAYTGRAAAFLLLERPREAERDYRKAIELLEMNPSPELSDSAR----TGLAETLIELQRYEEALDVIETIENASSQASALVAVNEEQEICASSARVAISSGDHPGALGYLVRAIRLNGGGSQRKFTVPIKEDASLYAL-RGNCYVELEDAELALEDFSRSIQISERQSEAWVGQG 679          
BLAST of Ggra5790.t1 vs. uniprot
Match: A0A7S2ZHD0 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZHD0_9RHOD)

HSP 1 Score: 81.6 bits (200), Expect = 4.710e-13
Identity = 63/207 (30.43%), Postives = 97/207 (46.86%), Query Frame = 0
Query:    1 MNVRPGSYGQFVLDVRRRFAGSSSVGANKIKYLNEDKDEILISNDEDLESCFEDYLDMRSKTVFLKVYEAEHVTTSQIQSPVSSNPSSNIGGPRQLLNSVRTEFSSKSSGPASEDSRDXXXXXXXXXXXSSRPVLLTPSQEKGAEAHKRILDGENDEAIALYEEALRLDPDNATAQGGRGGARLFSGNSVGAEEDYRTALHMIENRR 207
            M +  GSY +F L++RRR+ G+S     KIKY +++ DE+ IS+DED E C E  L+ + KTV   V E + +T +  ++ +S++          L  S   +  +K  G                    S       +Q+K  EA   + +G    AI  Y+EA+ +DP  A A  GR  A+L    +  A EDY  AL +   R+
Sbjct:  359 MRLERGSYDKFQLEIRRRY-GASRSSILKIKYFDDEGDEVRISSDEDFEECIESALENQWKTVKAVVEEVQTLTDTSSRASISAS----------LSYSSLLDLEAKDDG-------------------GSGIATECSAQDKIREAMGLLQNGNVKAAIRCYDEAILIDPSTANAYCGRAAAKLIVHETEQALEDYDRALEICAERQ 535          
BLAST of Ggra5790.t1 vs. uniprot
Match: A0A1X6NJ08 (PB1 domain-containing protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJ08_PORUM)

HSP 1 Score: 68.9 bits (167), Expect = 5.880e-9
Identity = 90/349 (25.79%), Postives = 136/349 (38.97%), Query Frame = 0
Query:    6 GSYGQFVLDVRRRFAGSSSVGANKIKYLNEDKDEILISNDEDLESCFEDYLDMRSKTVFLKVYEAEHV---TTSQIQSPVSSNPSS---------------NIGGPRQLLNSVRTEFSSKSSGPASEDSRDXXXXXXXXXXXSSRPVLLT-------------------------PSQEKGAEA-------HKRILDGENDEAIALYEEALRLDPDNATAQGGRGGARLFSGNSVGAEEDYRTALHMIEN-------------RRGGSVGNLTLQMCIVGLVESLIDQRRYEEAVSAASRIDPSCGNTGCNDAVRDELDSASNAALEALESNEFGEAMSCYSYAIPVET 291
            G Y + + +VR+R+   + V   K+K+ +ED D+++++ DEDL  C     D   K + L+V  A      T+++  + VSS   S               N+    +  +   T   S   G AS             XXXSSRP + T                         P+Q     A       H+  +DG    A+A Y  AL L PD   A  GRG ARL   ++  AE DYR AL  ++                  + G       + GL E+LI+ RRYEEAV+  +    +  +T    A+            +A     FG+A + Y+  + V T
Sbjct:   18 GCYDRLLGEVRKRYGAPAGVEL-KLKFKDEDGDDVVLACDEDLAECLSVATDAGLKIMPLQVSRAAPAAQDTSTRPPASVSSTAVSSERPDLATELAAARRNVSALEEQAHMAATRRMSLPVGVASLGG----VPGGGSXXXSSRPAVTTRLSAVTSPSATPPVPSTASSSPQAGPAQSADGLATAGNRALHRNDVDG----ALASYSAALALQPDCVLALAGRGAARLILNDAAAAETDYRAALSALDGDXXXXXXXXXXXXXXAAAAGER--DAVLGGLAEALIELRRYEEAVTVTAPASAAARST-VGAALEXXXXXXXXXGAQAAAEGAFGDATAVYTAGLRVAT 354          
BLAST of Ggra5790.t1 vs. uniprot
Match: A0A3S1G984 (Tetratricopeptide repeat protein (Fragment) n=3 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A3S1G984_9HYPH)

HSP 1 Score: 62.8 bits (151), Expect = 7.370e-7
Identity = 56/206 (27.18%), Postives = 85/206 (41.26%), Query Frame = 0
Query:  140 QEKGAEAHKRILDGENDEAIALYEEALRLDPDNATAQGGRGGARLFSGNSVGAEEDYRTALHMIENRRGGSVGNLTLQMCIVGLVESLIDQRRYEEAVSAASRIDPSCGNTGCNDAVRDELDSASNAALEALESNEFGEAMSCYSYAIPVETPYLNLLPSETPRALLRLGRTKCYKAMEDYDMALEDYEAAVQIEPESVAGHKGCG 345
            +  GA   K  +DG    A+  +++A+ LDP NA A  GR  AR   G+  GA    R A  +   R G                    D    + AV+A+        N   +D   +E D A+ A  +   S E G +        P +     L+ +  PR L+ + +       E+YD A+E YEAA+ I+PE+   + G G
Sbjct:  207 ERAGARLVKYGVDG----ALLDFDKAISLDPKNADAYLGRSRARTLKGDQAGAAAGCRRAGELDPARTGSC------------------DAIARKAAVAASGEPATGIANADGSDIAANEPDRAAVAPADTAASAEPGASDDLS----PADPKLAKLIDTSDPRVLVAVAKGDSLLHEENYDEAIEAYEAAIAIDPENPLAYFGRG 386          
The following BLAST results are available for this feature:
BLAST of Ggra5790.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3J6K82.440e-18172.09CBS domain-containing protein n=1 Tax=Gracilariops... [more]
R7QPC91.760e-13258.19TPR repeat-containing protein n=1 Tax=Chondrus cri... [more]
A0A7S3E9X84.060e-3330.02Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S1TD023.440e-1425.83Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S2ZHD04.710e-1330.43Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1X6NJ085.880e-925.79PB1 domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A3S1G9847.370e-727.18Tetratricopeptide repeat protein (Fragment) n=3 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 304..337
e-value: 7.3E-4
score: 28.8
coord: 338..371
e-value: 0.19
score: 20.8
coord: 173..206
e-value: 150.0
score: 4.6
coord: 139..172
e-value: 7.0
score: 15.6
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 304..336
e-value: 0.0037
score: 17.4
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 139..172
score: 8.3194
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 304..337
score: 9.5584
IPR000270PB1 domainPFAMPF00564PB1coord: 5..63
e-value: 1.9E-8
score: 34.2
IPR000270PB1 domainPROSITEPS51745PB1coord: 1..68
score: 11.530674
NoneNo IPR availablePFAMPF13414TPR_11coord: 153..180
e-value: 6.2E-7
score: 29.0
NoneNo IPR availableGENE3D3.10.20.90coord: 4..68
e-value: 2.2E-7
score: 32.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..150
NoneNo IPR availablePANTHERPTHR22904:SF394STRESS-INDUCED-PHOSPHOPROTEIN 1coord: 145..384
NoneNo IPR availableCDDcd05992PB1coord: 1..63
e-value: 9.20906E-8
score: 47.2725
NoneNo IPR availableSUPERFAMILY54277CAD & PB1 domainscoord: 7..72
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 138..250
e-value: 2.3E-10
score: 42.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 253..399
e-value: 7.9E-21
score: 76.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 264..384
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 153..291
IPR045248Heat shock protein Sti1-likePANTHERPTHR22904TPR REPEAT CONTAINING PROTEINcoord: 145..384

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:254854..256095 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5790.t1Ggra5790.t1Gracilaria gracilis GNS1m malemRNAtig00000935_pilon 254854..256095 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5790.t1 ID=Ggra5790.t1|Name=Ggra5790.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=414bp
MNVRPGSYGQFVLDVRRRFAGSSSVGANKIKYLNEDKDEILISNDEDLES
CFEDYLDMRSKTVFLKVYEAEHVTTSQIQSPVSSNPSSNIGGPRQLLNSV
RTEFSSKSSGPASEDSRDDSTTTTTLKRRSSRPVLLTPSQEKGAEAHKRI
LDGENDEAIALYEEALRLDPDNATAQGGRGGARLFSGNSVGAEEDYRTAL
HMIENRRGGSVGNLTLQMCIVGLVESLIDQRRYEEAVSAASRIDPSCGNT
GCNDAVRDELDSASNAALEALESNEFGEAMSCYSYAIPVETPYLNLLPSE
TPRALLRLGRTKCYKAMEDYDMALEDYEAAVQIEPESVAGHKGCGKCLAE
LEQVENALESYKMAHKLDPADDEVRNEIEVIKRILPDSLDNKKAEIAKLG
ALLGGMELPGKPP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR000270PB1_dom
IPR011990TPR-like_helical_dom_sf
IPR045248Sti1-like