Ggra5772.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra5772.t1
Unique Name	Ggra5772.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	262

Homology

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BLAST of Ggra5772.t1 vs. uniprot
Match: A0A2V3J1L9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1L9_9FLOR)

HSP 1 Score: 228 bits (581), Expect = 1.340e-64
Identity = 131/254 (51.57%), Postives = 166/254 (65.35%), Query Frame = 0

Query:    2 GSSEHREERVLFWLCTELVPPGAVLAGCPHPGADMLAISCNADVILLALVPSKDSLVEITRASVRTLVMSLSVQEDMICVVDRKDSVAFFQIHAGVEKLVRDRSDFRKRVVSDAVLIDRGQMIGVDRLGNLFSLGYEELDTLRRVEVLKKDGSVNSPYISVVMSMKTEDDSIVAHQDSASQHAIPPTLGQEYDEMPPELRSDYSATTPEASGLLTPSDNMEVGNEIGDAHSIEEVHM-EENENVDNEENESSDV 254
            GSSE  E+RV F LC E+V PGAVLAG PHP AD+ A+SCN  VILLAL+P++ +L+E+ RASVRTLV+SLS+ ED++CVVDRKDSV FFQIH    KLVRDRSD RKR+VSDAVLIDR QMIGVDR+G LFSLGYEE D  +R    ++ G+V SP+I ++++   ED     +    S    PP LG+EYD M     SD    T E +      D  +  N  GD    + + M  +N+ +DN   +  D 
Sbjct: 1237 GSSEASEDRVRFRLCCEIVLPGAVLAGAPHPTADLFALSCNDQVILLALLPTETALIEVARASVRTLVVSLSIHEDIVCVVDRKDSVTFFQIHTKQRKLVRDRSDHRKRLVSDAVLIDRTQMIGVDRVGALFSLGYEEGDAPKRSVFQERSGAVISPFIPILLAAGPEDFGEEINHALRSPEEPPPALGEEYDVMNVGSESDTPPETTEQA------DETDASNGTGDQQDEQGMQMLVDNQVMDNVNEDDGDA 1484

The following BLAST results are available for this feature:

BLAST of Ggra5772.t1 vs. uniprot

BLAST of Ggra5772.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J1L9	1.340e-64	51.57	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 230..250
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..261
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..219
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..29 score: 5.0
IPR004871	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	PFAM	PF03178	CPSF_A	coord: 34..140 e-value: 4.0E-7 score: 29.7
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 5..184 e-value: 1.4E-16 score: 62.7

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000935_pilon	contig	tig00000935_pilon:150993..151778 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5772.t1	Ggra5772.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000935_pilon 150993..151778 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra5772.t1 ID=Ggra5772.t1|Name=Ggra5772.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=262bp
MGSSEHREERVLFWLCTELVPPGAVLAGCPHPGADMLAISCNADVILLAL
VPSKDSLVEITRASVRTLVMSLSVQEDMICVVDRKDSVAFFQIHAGVEKL
VRDRSDFRKRVVSDAVLIDRGQMIGVDRLGNLFSLGYEELDTLRRVEVLK
KDGSVNSPYISVVMSMKTEDDSIVAHQDSASQHAIPPTLGQEYDEMPPEL
RSDYSATTPEASGLLTPSDNMEVGNEIGDAHSIEEVHMEENENVDNEENE
SSDVPNVGTTK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004871	Cleavage/polyA-sp_fac_asu_C
IPR015943	WD40/YVTN_repeat-like_dom_sf