Ggra5772.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5772.t1
Unique NameGgra5772.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:150993..151778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_01017T0
PFAMsCPSF_A,MMS1_N
Max annot lvl4751|Fungi
Evalue0.000188
EggNOG OGsKOG1898@1|root,KOG1898@2759|Eukaryota,39PU1@33154|Opisthokonta,3Q62X@4751|Fungi,1GVNM@112252|Fungi incertae sedis
DescriptionCPSF A subunit region
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5772Ggra5772Gracilaria gracilis GNS1m malegenetig00000935_pilon 150993..151778 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5772.t1.start1Ggra5772.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000935_pilon 150993..150995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5772.t1.CDS1Ggra5772.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000935_pilon 150993..151778 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5772.t1.exon1Ggra5772.t1.exon1Gracilaria gracilis GNS1m maleexontig00000935_pilon 150993..151778 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5772.t1.stop1Ggra5772.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000935_pilon 151776..151778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5772.t1Ggra5772.t1Gracilaria gracilis GNS1m malepolypeptidetig00000935_pilon 150993..151778 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5772.t1 ID=Ggra5772.t1|Name=Ggra5772.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=262bp
MGSSEHREERVLFWLCTELVPPGAVLAGCPHPGADMLAISCNADVILLAL
VPSKDSLVEITRASVRTLVMSLSVQEDMICVVDRKDSVAFFQIHAGVEKL
VRDRSDFRKRVVSDAVLIDRGQMIGVDRLGNLFSLGYEELDTLRRVEVLK
KDGSVNSPYISVVMSMKTEDDSIVAHQDSASQHAIPPTLGQEYDEMPPEL
RSDYSATTPEASGLLTPSDNMEVGNEIGDAHSIEEVHMEENENVDNEENE
SSDVPNVGTTK*
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spliced messenger RNA

>Ggra5772.t1 ID=Ggra5772.t1|Name=Ggra5772.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000935_pilon:150993..151778+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCTTCAGAACACAGAGAAGAACGAGTACTGTTTTGGCTCTGTAC
TGAGCTCGTTCCTCCAGGTGCAGTATTGGCCGGGTGTCCACATCCAGGTG
CGGATATGCTTGCCATATCATGTAATGCAGATGTCATTTTACTCGCCTTG
GTTCCATCGAAAGACTCCCTTGTGGAAATAACTCGCGCATCCGTGCGTAC
CCTGGTTATGAGCCTGAGTGTTCAAGAAGACATGATTTGTGTCGTTGACC
GGAAAGACTCGGTAGCTTTTTTCCAGATCCATGCAGGTGTTGAAAAGTTG
GTTCGGGATAGGAGTGACTTTCGGAAACGTGTGGTTTCAGATGCGGTTCT
TATCGATCGAGGGCAGATGATTGGTGTGGATCGACTCGGAAACTTGTTTT
CTCTTGGATATGAAGAACTAGATACACTCCGGCGCGTGGAGGTTCTGAAG
AAAGATGGATCTGTGAACTCTCCGTATATCTCGGTAGTGATGTCAATGAA
GACTGAAGATGATAGCATAGTTGCACACCAGGATTCAGCGTCGCAGCACG
CAATACCTCCCACACTAGGTCAAGAATACGATGAGATGCCTCCTGAACTT
CGATCCGACTATTCTGCCACTACACCCGAAGCGTCCGGATTGCTAACACC
GTCGGATAACATGGAGGTTGGCAATGAGATCGGCGACGCCCATAGTATTG
AGGAGGTGCACATGGAAGAAAACGAAAATGTTGACAATGAAGAGAACGAG
AGTTCTGACGTGCCAAACGTAGGGACAACGAAATAG
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protein sequence of Ggra5772.t1

>Ggra5772.t1 ID=Ggra5772.t1|Name=Ggra5772.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=262bp
MGSSEHREERVLFWLCTELVPPGAVLAGCPHPGADMLAISCNADVILLAL
VPSKDSLVEITRASVRTLVMSLSVQEDMICVVDRKDSVAFFQIHAGVEKL
VRDRSDFRKRVVSDAVLIDRGQMIGVDRLGNLFSLGYEELDTLRRVEVLK
KDGSVNSPYISVVMSMKTEDDSIVAHQDSASQHAIPPTLGQEYDEMPPEL
RSDYSATTPEASGLLTPSDNMEVGNEIGDAHSIEEVHMEENENVDNEENE
SSDVPNVGTTK*
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mRNA from alignment at tig00000935_pilon:150993..151778+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5772.t1 ID=Ggra5772.t1|Name=Ggra5772.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000935_pilon:150993..151778+ (Gracilaria gracilis GNS1m male)
ATGGGCTCTTCAGAACACAGAGAAGAACGAGTACTGTTTTGGCTCTGTAC
TGAGCTCGTTCCTCCAGGTGCAGTATTGGCCGGGTGTCCACATCCAGGTG
CGGATATGCTTGCCATATCATGTAATGCAGATGTCATTTTACTCGCCTTG
GTTCCATCGAAAGACTCCCTTGTGGAAATAACTCGCGCATCCGTGCGTAC
CCTGGTTATGAGCCTGAGTGTTCAAGAAGACATGATTTGTGTCGTTGACC
GGAAAGACTCGGTAGCTTTTTTCCAGATCCATGCAGGTGTTGAAAAGTTG
GTTCGGGATAGGAGTGACTTTCGGAAACGTGTGGTTTCAGATGCGGTTCT
TATCGATCGAGGGCAGATGATTGGTGTGGATCGACTCGGAAACTTGTTTT
CTCTTGGATATGAAGAACTAGATACACTCCGGCGCGTGGAGGTTCTGAAG
AAAGATGGATCTGTGAACTCTCCGTATATCTCGGTAGTGATGTCAATGAA
GACTGAAGATGATAGCATAGTTGCACACCAGGATTCAGCGTCGCAGCACG
CAATACCTCCCACACTAGGTCAAGAATACGATGAGATGCCTCCTGAACTT
CGATCCGACTATTCTGCCACTACACCCGAAGCGTCCGGATTGCTAACACC
GTCGGATAACATGGAGGTTGGCAATGAGATCGGCGACGCCCATAGTATTG
AGGAGGTGCACATGGAAGAAAACGAAAATGTTGACAATGAAGAGAACGAG
AGTTCTGACGTGCCAAACGTAGGGACAACGAAATAG
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Coding sequence (CDS) from alignment at tig00000935_pilon:150993..151778+

>Ggra5772.t1 ID=Ggra5772.t1|Name=Ggra5772.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=786bp|location=Sequence derived from alignment at tig00000935_pilon:150993..151778+ (Gracilaria gracilis GNS1m male)
ATGGGCTCTTCAGAACACAGAGAAGAACGAGTACTGTTTTGGCTCTGTAC
TGAGCTCGTTCCTCCAGGTGCAGTATTGGCCGGGTGTCCACATCCAGGTG
CGGATATGCTTGCCATATCATGTAATGCAGATGTCATTTTACTCGCCTTG
GTTCCATCGAAAGACTCCCTTGTGGAAATAACTCGCGCATCCGTGCGTAC
CCTGGTTATGAGCCTGAGTGTTCAAGAAGACATGATTTGTGTCGTTGACC
GGAAAGACTCGGTAGCTTTTTTCCAGATCCATGCAGGTGTTGAAAAGTTG
GTTCGGGATAGGAGTGACTTTCGGAAACGTGTGGTTTCAGATGCGGTTCT
TATCGATCGAGGGCAGATGATTGGTGTGGATCGACTCGGAAACTTGTTTT
CTCTTGGATATGAAGAACTAGATACACTCCGGCGCGTGGAGGTTCTGAAG
AAAGATGGATCTGTGAACTCTCCGTATATCTCGGTAGTGATGTCAATGAA
GACTGAAGATGATAGCATAGTTGCACACCAGGATTCAGCGTCGCAGCACG
CAATACCTCCCACACTAGGTCAAGAATACGATGAGATGCCTCCTGAACTT
CGATCCGACTATTCTGCCACTACACCCGAAGCGTCCGGATTGCTAACACC
GTCGGATAACATGGAGGTTGGCAATGAGATCGGCGACGCCCATAGTATTG
AGGAGGTGCACATGGAAGAAAACGAAAATGTTGACAATGAAGAGAACGAG
AGTTCTGACGTGCCAAACGTAGGGACAACGAAATAG
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