Ggra5771.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5771.t1
Unique NameGgra5771.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length312
Homology
BLAST of Ggra5771.t1 vs. uniprot
Match: A0A2V3J1L9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1L9_9FLOR)

HSP 1 Score: 357 bits (917), Expect = 3.600e-109
Identity = 180/295 (61.02%), Postives = 221/295 (74.92%), Query Frame = 0
Query:    2 TGLFLTVPPEGIGHHLRQPLENSVVAQLVDGTEAAGILSTCRTIELGIIEDGVVTQIYEKGIRFIFMKKASDVDLIGKIVNKSVRESFYSKILDWHPPEEVTISVATIGAGFILVSLVRPHGLKPILYLLKCFPSEPTRGLRVVASAILDHELSCIKVPEWAVTHSDHDISSPRLPPMVILGTYAPSIEVRLFGSTLEVVDCRTTRPWDVRADNATDHSESATHCTQMRSASAHVDTNPSM----ELDQDLAGGYIHVNTMTAVPESICALELDRRRLVMAGLRDGSVIFSALAK 292
            +GLFL++PP+  GH   +  E+S +AQLVDGT+A GILS  RTIE+G+IEDGV+ QI+E G+RF+F+++A DVDL GK+V  S+R+  YSKILDWHPPEE  ISV TIGAGFI+VSLVRP GLKP+LY+LKCFPS PTRGL +VAS +LDHELSCIK+PEW + HS+ DISSPRLPPMV+LGTYAPS+EVRL G  LEVVD RTTRPWD+R +      ES       R    +  T+ S     E   +L    +  N MTAVPES+CA+E+DRRRLV AGLRDGSV+    A+
Sbjct:  713 SGLFLSLPPDTSGHDSDRSQESSTIAQLVDGTDAMGILSIRRTIEVGVIEDGVIAQIHEDGVRFVFLREAGDVDLTGKVVGNSLRQPLYSKILDWHPPEEGVISVGTIGAGFIIVSLVRPTGLKPMLYMLKCFPSAPTRGLCIVASTMLDHELSCIKIPEWTIIHSESDISSPRLPPMVVLGTYAPSVEVRLLGPALEVVDRRTTRPWDIRPEPYGGRDESI-FAGDTRGLGDNGRTSRSASNRTERKSELVYARMQSNLMTAVPESLCAIEIDRRRLVFAGLRDGSVMCFTFAE 1006          
BLAST of Ggra5771.t1 vs. uniprot
Match: A0A6P5FSE5 (DNA damage-binding protein 1 n=4 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5FSE5_ANACO)

HSP 1 Score: 59.7 bits (143), Expect = 3.420e-6
Identity = 47/174 (27.01%), Postives = 78/174 (44.83%), Query Frame = 0
Query:   24 SVVAQLVDGTEAAGILSTCRTIELGIIEDGVVTQIYEKGIRFIFMKKASDVDLIGKIVNKSVRESFYSKILDWHPPEEVTISVATIGAGFILVSLVRPHGLKPILYLLKCFPSEPTR-GLRVVASAILDHELSCIKVPEWAV---THSDHDISSPRLPPMVILGTYAPSIEVRL 193
            SV     D T+A G      T+  G++ DG++ QI+ KG+R          + +   V           I +   P+++TISV  +G   ++V+   P      L++L   P       L V+    L HE+SCI +P  ++   T      S  +   +V++GT+ PS+EV L
Sbjct:  615 SVGVNFRDVTDAVGFQPNVCTLACGLVSDGLLVQIHNKGVRLCLPTTNGHPEGVPLSV----------PICNSWSPDKITISVGAVGHNLVIVTTSNPF----FLFILSIRPLLAYHYELYVIREVKLYHEVSCISIPRGSINSDTLMTEFRSKDKDNKIVVIGTHKPSVEVLL 774          
The following BLAST results are available for this feature:
BLAST of Ggra5771.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J1L93.600e-10961.02Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A6P5FSE53.420e-627.01DNA damage-binding protein 1 n=4 Tax=Ananas comosu... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 21..301
e-value: 2.2E-20
score: 74.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:149444..150379 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5771.t1Ggra5771.t1Gracilaria gracilis GNS1m malemRNAtig00000935_pilon 149444..150379 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5771.t1 ID=Ggra5771.t1|Name=Ggra5771.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=312bp
MTGLFLTVPPEGIGHHLRQPLENSVVAQLVDGTEAAGILSTCRTIELGII
EDGVVTQIYEKGIRFIFMKKASDVDLIGKIVNKSVRESFYSKILDWHPPE
EVTISVATIGAGFILVSLVRPHGLKPILYLLKCFPSEPTRGLRVVASAIL
DHELSCIKVPEWAVTHSDHDISSPRLPPMVILGTYAPSIEVRLFGSTLEV
VDCRTTRPWDVRADNATDHSESATHCTQMRSASAHVDTNPSMELDQDLAG
GYIHVNTMTAVPESICALELDRRRLVMAGLRDGSVIFSALAKRMIWILWR
PTLQMLRGISS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf