Ggra412.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra412.t1
Unique NameGgra412.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000928_piloncontigtig00000928_pilon:67306..68727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.E7BWH1
Preferred namepsbB
PFAMsPSII
Max annot lvl2836|Bacillariophyta
KEGG koko:K02704
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
Evalue0.0
EggNOG OGs28JG1@1|root,2QRV6@2759|Eukaryota,2XEM0@2836|Bacillariophyta
DescriptionOne of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation
COG categoryP
BRITEko00000,ko00001,ko00002,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra412Ggra412Gracilaria gracilis GNS1m malegenetig00000928_pilon 67306..68727 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra412.t1.stop1Ggra412.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000928_pilon 67306..67308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra412.t1.CDS1Ggra412.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000928_pilon 67306..68727 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra412.t1.exon1Ggra412.t1.exon1Gracilaria gracilis GNS1m maleexontig00000928_pilon 67306..68727 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra412.t1.start1Ggra412.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000928_pilon 68725..68727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra412.t1Ggra412.t1Gracilaria gracilis GNS1m malepolypeptidetig00000928_pilon 67306..68727 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra412.t1 ID=Ggra412.t1|Name=Ggra412.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp
MALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESVS
NPGLWSFEGVAITHIVLSGMLFLASIWHWVYWDLELFRDPRTGEPALDLP
KIFGIHLLLSSLLCFGFGAFHTTGLFGPGIWVSDGYGITGKVQPVAPAWG
PDGFNPFNPGGIASHHIAAGTVGILAGLFHLTVRPPQRLYRALRMGNIET
VLSSSISAVFFSAFVTCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIER
RVENSLNEGATPEEAWSKIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGI
AEAWLGHPIFQDKAGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRA
ESKYSIEQVGVNVSFYGGKLNGKVFNDAPSVKKYARKAQLGEVFEFDRTT
LESDGVFRSSPRGWFTFGHANFALIFFFGHLWHGSRTIFRDVFAGIGAEV
TEQVEFGAFQKLGDRSSKKQGAV*
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spliced messenger RNA

>Ggra412.t1 ID=Ggra412.t1|Name=Ggra412.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000928_pilon:67306..68727- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTATATGAATTAGCTGTCTTTGATCCATCTGATCCAGTATTAAA
TCCAATGTGGAGACAGGGTATGTTTGTCATGCCTTTTATGGCAAGACTTG
GAGTAACAGATTCATGGGGTGGATGGAGTATTACTGGAGAAAGTGTGTCC
AATCCAGGATTATGGAGCTTTGAAGGTGTTGCCATAACTCATATCGTTTT
ATCAGGTATGTTATTTTTAGCATCTATATGGCATTGGGTTTACTGGGATT
TAGAATTATTTAGAGATCCTAGAACAGGTGAACCGGCTTTAGATTTGCCT
AAAATATTCGGTATTCATTTACTATTATCTAGTTTGCTATGCTTTGGTTT
TGGGGCATTTCATACAACAGGACTATTCGGACCAGGGATATGGGTCTCAG
ATGGATATGGAATAACAGGTAAAGTACAACCGGTTGCTCCAGCTTGGGGT
CCAGACGGTTTTAATCCATTTAACCCAGGTGGAATAGCATCACATCATAT
AGCAGCAGGTACTGTAGGAATATTAGCTGGTTTATTTCATCTGACAGTAA
GACCACCACAACGTTTGTATAGAGCATTAAGAATGGGCAACATAGAAACT
GTATTATCAAGTAGTATATCTGCTGTTTTTTTTAGCGCTTTCGTAACTTG
TGGAACTATGTGGTATGGTTCAGCAACAACGCCTATCGAACTTTTTGGAC
CAACTAGATATCAGTGGGATAGTGGATACTTTCAGCAAGAAATTGAAAGA
AGAGTTGAAAATTCATTAAATGAAGGAGCAACACCTGAAGAAGCGTGGTC
TAAAATACCAGATAAATTAGCATTTTATGATTATATAGGCAATAATCCTG
CAAAAGGCGGCTTATTTAGAGCTGGTCCTATGGACAAGGGAGATGGCATC
GCAGAAGCATGGTTAGGTCATCCTATATTTCAAGATAAAGCAGGAAGAGA
ATTAACTGTTAGAAGAATGCCTGCATTCTTTGAAACTTTTCCAGTAATAC
TTGTTGATAAGGATGGAATTATACGTGCGGATATACCATTTAGAAGAGCC
GAATCAAAATACAGTATTGAACAAGTAGGTGTAAATGTAAGTTTTTACGG
CGGAAAACTTAATGGAAAAGTATTTAACGATGCTCCTAGTGTCAAAAAAT
ATGCACGAAAAGCTCAATTAGGAGAAGTCTTCGAATTTGATCGTACAACA
TTGGAATCAGATGGTGTATTTAGAAGTAGTCCTAGAGGATGGTTTACATT
TGGACATGCCAACTTTGCACTAATTTTTTTCTTTGGCCACTTATGGCATG
GTTCAAGGACTATATTCAGGGATGTATTCGCAGGTATTGGCGCAGAAGTA
ACAGAACAAGTGGAATTTGGTGCATTCCAAAAATTAGGAGATAGAAGTAG
TAAAAAACAAGGTGCTGTATAA
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protein sequence of Ggra412.t1

>Ggra412.t1 ID=Ggra412.t1|Name=Ggra412.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=474bp
MALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESVS
NPGLWSFEGVAITHIVLSGMLFLASIWHWVYWDLELFRDPRTGEPALDLP
KIFGIHLLLSSLLCFGFGAFHTTGLFGPGIWVSDGYGITGKVQPVAPAWG
PDGFNPFNPGGIASHHIAAGTVGILAGLFHLTVRPPQRLYRALRMGNIET
VLSSSISAVFFSAFVTCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIER
RVENSLNEGATPEEAWSKIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGI
AEAWLGHPIFQDKAGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRA
ESKYSIEQVGVNVSFYGGKLNGKVFNDAPSVKKYARKAQLGEVFEFDRTT
LESDGVFRSSPRGWFTFGHANFALIFFFGHLWHGSRTIFRDVFAGIGAEV
TEQVEFGAFQKLGDRSSKKQGAV*
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mRNA from alignment at tig00000928_pilon:67306..68727-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra412.t1 ID=Ggra412.t1|Name=Ggra412.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000928_pilon:67306..68727- (Gracilaria gracilis GNS1m male)
ATGGCTTTATATGAATTAGCTGTCTTTGATCCATCTGATCCAGTATTAAA
TCCAATGTGGAGACAGGGTATGTTTGTCATGCCTTTTATGGCAAGACTTG
GAGTAACAGATTCATGGGGTGGATGGAGTATTACTGGAGAAAGTGTGTCC
AATCCAGGATTATGGAGCTTTGAAGGTGTTGCCATAACTCATATCGTTTT
ATCAGGTATGTTATTTTTAGCATCTATATGGCATTGGGTTTACTGGGATT
TAGAATTATTTAGAGATCCTAGAACAGGTGAACCGGCTTTAGATTTGCCT
AAAATATTCGGTATTCATTTACTATTATCTAGTTTGCTATGCTTTGGTTT
TGGGGCATTTCATACAACAGGACTATTCGGACCAGGGATATGGGTCTCAG
ATGGATATGGAATAACAGGTAAAGTACAACCGGTTGCTCCAGCTTGGGGT
CCAGACGGTTTTAATCCATTTAACCCAGGTGGAATAGCATCACATCATAT
AGCAGCAGGTACTGTAGGAATATTAGCTGGTTTATTTCATCTGACAGTAA
GACCACCACAACGTTTGTATAGAGCATTAAGAATGGGCAACATAGAAACT
GTATTATCAAGTAGTATATCTGCTGTTTTTTTTAGCGCTTTCGTAACTTG
TGGAACTATGTGGTATGGTTCAGCAACAACGCCTATCGAACTTTTTGGAC
CAACTAGATATCAGTGGGATAGTGGATACTTTCAGCAAGAAATTGAAAGA
AGAGTTGAAAATTCATTAAATGAAGGAGCAACACCTGAAGAAGCGTGGTC
TAAAATACCAGATAAATTAGCATTTTATGATTATATAGGCAATAATCCTG
CAAAAGGCGGCTTATTTAGAGCTGGTCCTATGGACAAGGGAGATGGCATC
GCAGAAGCATGGTTAGGTCATCCTATATTTCAAGATAAAGCAGGAAGAGA
ATTAACTGTTAGAAGAATGCCTGCATTCTTTGAAACTTTTCCAGTAATAC
TTGTTGATAAGGATGGAATTATACGTGCGGATATACCATTTAGAAGAGCC
GAATCAAAATACAGTATTGAACAAGTAGGTGTAAATGTAAGTTTTTACGG
CGGAAAACTTAATGGAAAAGTATTTAACGATGCTCCTAGTGTCAAAAAAT
ATGCACGAAAAGCTCAATTAGGAGAAGTCTTCGAATTTGATCGTACAACA
TTGGAATCAGATGGTGTATTTAGAAGTAGTCCTAGAGGATGGTTTACATT
TGGACATGCCAACTTTGCACTAATTTTTTTCTTTGGCCACTTATGGCATG
GTTCAAGGACTATATTCAGGGATGTATTCGCAGGTATTGGCGCAGAAGTA
ACAGAACAAGTGGAATTTGGTGCATTCCAAAAATTAGGAGATAGAAGTAG
TAAAAAACAAGGTGCTGTATAA
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Coding sequence (CDS) from alignment at tig00000928_pilon:67306..68727-

>Ggra412.t1 ID=Ggra412.t1|Name=Ggra412.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00000928_pilon:67306..68727- (Gracilaria gracilis GNS1m male)
ATGGCTTTATATGAATTAGCTGTCTTTGATCCATCTGATCCAGTATTAAA
TCCAATGTGGAGACAGGGTATGTTTGTCATGCCTTTTATGGCAAGACTTG
GAGTAACAGATTCATGGGGTGGATGGAGTATTACTGGAGAAAGTGTGTCC
AATCCAGGATTATGGAGCTTTGAAGGTGTTGCCATAACTCATATCGTTTT
ATCAGGTATGTTATTTTTAGCATCTATATGGCATTGGGTTTACTGGGATT
TAGAATTATTTAGAGATCCTAGAACAGGTGAACCGGCTTTAGATTTGCCT
AAAATATTCGGTATTCATTTACTATTATCTAGTTTGCTATGCTTTGGTTT
TGGGGCATTTCATACAACAGGACTATTCGGACCAGGGATATGGGTCTCAG
ATGGATATGGAATAACAGGTAAAGTACAACCGGTTGCTCCAGCTTGGGGT
CCAGACGGTTTTAATCCATTTAACCCAGGTGGAATAGCATCACATCATAT
AGCAGCAGGTACTGTAGGAATATTAGCTGGTTTATTTCATCTGACAGTAA
GACCACCACAACGTTTGTATAGAGCATTAAGAATGGGCAACATAGAAACT
GTATTATCAAGTAGTATATCTGCTGTTTTTTTTAGCGCTTTCGTAACTTG
TGGAACTATGTGGTATGGTTCAGCAACAACGCCTATCGAACTTTTTGGAC
CAACTAGATATCAGTGGGATAGTGGATACTTTCAGCAAGAAATTGAAAGA
AGAGTTGAAAATTCATTAAATGAAGGAGCAACACCTGAAGAAGCGTGGTC
TAAAATACCAGATAAATTAGCATTTTATGATTATATAGGCAATAATCCTG
CAAAAGGCGGCTTATTTAGAGCTGGTCCTATGGACAAGGGAGATGGCATC
GCAGAAGCATGGTTAGGTCATCCTATATTTCAAGATAAAGCAGGAAGAGA
ATTAACTGTTAGAAGAATGCCTGCATTCTTTGAAACTTTTCCAGTAATAC
TTGTTGATAAGGATGGAATTATACGTGCGGATATACCATTTAGAAGAGCC
GAATCAAAATACAGTATTGAACAAGTAGGTGTAAATGTAAGTTTTTACGG
CGGAAAACTTAATGGAAAAGTATTTAACGATGCTCCTAGTGTCAAAAAAT
ATGCACGAAAAGCTCAATTAGGAGAAGTCTTCGAATTTGATCGTACAACA
TTGGAATCAGATGGTGTATTTAGAAGTAGTCCTAGAGGATGGTTTACATT
TGGACATGCCAACTTTGCACTAATTTTTTTCTTTGGCCACTTATGGCATG
GTTCAAGGACTATATTCAGGGATGTATTCGCAGGTATTGGCGCAGAAGTA
ACAGAACAAGTGGAATTTGGTGCATTCCAAAAATTAGGAGATAGAAGTAG
TAAAAAACAAGGTGCTGTATAA
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