Ggra1225.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1225.t1
Unique NameGgra1225.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length206
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000926_piloncontigtig00000926_pilon:329052..329669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1225Ggra1225Gracilaria gracilis GNS1m malegenetig00000926_pilon 329052..329669 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1225.t1.start1Ggra1225.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000926_pilon 329052..329054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1225.t1.CDS1Ggra1225.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000926_pilon 329052..329669 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1225.t1.exon1Ggra1225.t1.exon1Gracilaria gracilis GNS1m maleexontig00000926_pilon 329052..329669 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1225.t1.stop1Ggra1225.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000926_pilon 329667..329669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1225.t1Ggra1225.t1Gracilaria gracilis GNS1m malepolypeptidetig00000926_pilon 329052..329669 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1225.t1 ID=Ggra1225.t1|Name=Ggra1225.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=206bp
MSLVPRNSLETRREQSRVSVHLVSEGDEDDTIEEEGSTSANVNKWLLFDD
LDWRPFYHLSEWDEPHSNTKRITVAVLMPSGILRGDFYAQILENRFLKIK
LTWPRAMMHIEVQHEKWLNNPSIKYTDLHPEMMGFERALKRLREHSKDRV
LSMSKIHLPFSVEPQFQSDNLRFTCGSIVFNIPLKAPVENYALGAQSIDE
FELVN*
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spliced messenger RNA

>Ggra1225.t1 ID=Ggra1225.t1|Name=Ggra1225.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00000926_pilon:329052..329669+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCTTGTTCCTCGAAATTCTCTTGAGACTCGTCGAGAACAGAGTAG
AGTTTCCGTTCATTTGGTATCAGAAGGCGATGAGGACGATACCATCGAAG
AAGAGGGCTCTACGTCCGCCAATGTGAACAAATGGCTGCTTTTTGATGAT
CTTGACTGGAGGCCATTTTATCATCTTTCTGAGTGGGATGAGCCCCATTC
CAATACGAAGAGAATTACTGTAGCCGTCTTGATGCCGTCAGGAATTCTTC
GAGGCGACTTTTATGCCCAAATTCTTGAAAACCGGTTTTTAAAAATTAAG
CTCACCTGGCCTCGGGCGATGATGCACATCGAAGTTCAGCATGAGAAGTG
GTTGAATAATCCTTCTATAAAATATACTGACCTCCATCCAGAGATGATGG
GATTTGAAAGAGCTCTCAAGCGTCTTCGTGAGCACAGCAAGGATCGGGTG
TTGTCAATGTCGAAGATTCATCTGCCCTTCAGTGTGGAGCCACAGTTTCA
ATCTGATAATCTACGATTTACCTGCGGCTCAATCGTATTTAATATCCCTC
TCAAGGCACCAGTGGAGAATTACGCTCTTGGCGCACAGAGTATTGATGAG
TTTGAGTTGGTGAACTGA
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protein sequence of Ggra1225.t1

>Ggra1225.t1 ID=Ggra1225.t1|Name=Ggra1225.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=206bp
MSLVPRNSLETRREQSRVSVHLVSEGDEDDTIEEEGSTSANVNKWLLFDD
LDWRPFYHLSEWDEPHSNTKRITVAVLMPSGILRGDFYAQILENRFLKIK
LTWPRAMMHIEVQHEKWLNNPSIKYTDLHPEMMGFERALKRLREHSKDRV
LSMSKIHLPFSVEPQFQSDNLRFTCGSIVFNIPLKAPVENYALGAQSIDE
FELVN*
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mRNA from alignment at tig00000926_pilon:329052..329669+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1225.t1 ID=Ggra1225.t1|Name=Ggra1225.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00000926_pilon:329052..329669+ (Gracilaria gracilis GNS1m male)
ATGAGTCTTGTTCCTCGAAATTCTCTTGAGACTCGTCGAGAACAGAGTAG
AGTTTCCGTTCATTTGGTATCAGAAGGCGATGAGGACGATACCATCGAAG
AAGAGGGCTCTACGTCCGCCAATGTGAACAAATGGCTGCTTTTTGATGAT
CTTGACTGGAGGCCATTTTATCATCTTTCTGAGTGGGATGAGCCCCATTC
CAATACGAAGAGAATTACTGTAGCCGTCTTGATGCCGTCAGGAATTCTTC
GAGGCGACTTTTATGCCCAAATTCTTGAAAACCGGTTTTTAAAAATTAAG
CTCACCTGGCCTCGGGCGATGATGCACATCGAAGTTCAGCATGAGAAGTG
GTTGAATAATCCTTCTATAAAATATACTGACCTCCATCCAGAGATGATGG
GATTTGAAAGAGCTCTCAAGCGTCTTCGTGAGCACAGCAAGGATCGGGTG
TTGTCAATGTCGAAGATTCATCTGCCCTTCAGTGTGGAGCCACAGTTTCA
ATCTGATAATCTACGATTTACCTGCGGCTCAATCGTATTTAATATCCCTC
TCAAGGCACCAGTGGAGAATTACGCTCTTGGCGCACAGAGTATTGATGAG
TTTGAGTTGGTGAACTGA
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Coding sequence (CDS) from alignment at tig00000926_pilon:329052..329669+

>Ggra1225.t1 ID=Ggra1225.t1|Name=Ggra1225.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=618bp|location=Sequence derived from alignment at tig00000926_pilon:329052..329669+ (Gracilaria gracilis GNS1m male)
ATGAGTCTTGTTCCTCGAAATTCTCTTGAGACTCGTCGAGAACAGAGTAG
AGTTTCCGTTCATTTGGTATCAGAAGGCGATGAGGACGATACCATCGAAG
AAGAGGGCTCTACGTCCGCCAATGTGAACAAATGGCTGCTTTTTGATGAT
CTTGACTGGAGGCCATTTTATCATCTTTCTGAGTGGGATGAGCCCCATTC
CAATACGAAGAGAATTACTGTAGCCGTCTTGATGCCGTCAGGAATTCTTC
GAGGCGACTTTTATGCCCAAATTCTTGAAAACCGGTTTTTAAAAATTAAG
CTCACCTGGCCTCGGGCGATGATGCACATCGAAGTTCAGCATGAGAAGTG
GTTGAATAATCCTTCTATAAAATATACTGACCTCCATCCAGAGATGATGG
GATTTGAAAGAGCTCTCAAGCGTCTTCGTGAGCACAGCAAGGATCGGGTG
TTGTCAATGTCGAAGATTCATCTGCCCTTCAGTGTGGAGCCACAGTTTCA
ATCTGATAATCTACGATTTACCTGCGGCTCAATCGTATTTAATATCCCTC
TCAAGGCACCAGTGGAGAATTACGCTCTTGGCGCACAGAGTATTGATGAG
TTTGAGTTGGTGAACTGA
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