Ggra1217.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1217.t1
Unique Name	Ggra1217.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	280

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000926_pilon	contig	tig00000926_pilon:83795..84634 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1217	Ggra1217	Gracilaria gracilis GNS1m male	gene	tig00000926_pilon 83795..84634 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1217.t1.start1	Ggra1217.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000926_pilon 83795..83797 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1217.t1.CDS1	Ggra1217.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000926_pilon 83795..84634 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1217.t1.exon1	Ggra1217.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000926_pilon 83795..84634 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1217.t1.stop1	Ggra1217.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000926_pilon 84632..84634 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1217.t1	Ggra1217.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000926_pilon 83795..84634 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000926_pilon:83795..84634+
coding sequence from alignment at tig00000926_pilon:83795..84634+

mRNA sequence

>Ggra1217.t1 ID=Ggra1217.t1|Name=Ggra1217.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=280bp
MVPLGYVCHPSYDCRCDPGKLISRQTALKHRTLAQNIAEEMGKVRFLPLP
EAIQDLSQLHSISDTLEDHSHSKYDSSPSTEVRNPGENEICSLQCTTSNL
ESHSMSLNRKIVHPHETDIGFNVGESTNTNSESALKSDISVEAKYENTEH
LKRSEAIPPNSNPVCTDIKFRIFMERDSKELSLGIKHALPDSFMDDFFKD
STLDDEPHLRYKSFKGIREALLPNSGVGTSEHPAYEQFHKALLVRADHSC
SSMDFVLIPKLPDIQLMNTFLCGIAYTRC*

spliced messenger RNA

>Ggra1217.t1 ID=Ggra1217.t1|Name=Ggra1217.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000926_pilon:83795..84634+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCCTTAGGGTATGTTTGTCATCCCAGTTATGACTGTCGCTGTGA
TCCTGGAAAACTGATATCGAGACAGACGGCATTGAAACACAGAACTCTAG
CTCAAAATATTGCAGAGGAGATGGGCAAGGTGCGCTTCTTACCGCTTCCT
GAAGCCATCCAAGACCTCTCGCAACTTCATTCTATTTCGGATACATTGGA
AGATCATTCACATTCGAAATACGATAGTTCTCCAAGCACGGAAGTGAGGA
ATCCTGGAGAAAATGAAATTTGTTCTCTACAATGCACTACTTCAAATCTT
GAAAGCCACTCCATGTCTTTGAACCGAAAAATCGTCCATCCCCACGAAAC
TGATATCGGCTTCAATGTCGGTGAGTCGACCAACACCAATTCGGAGAGCG
CGCTAAAGTCCGATATCTCTGTCGAAGCCAAGTATGAGAATACGGAACAC
TTAAAGCGCTCCGAAGCTATCCCGCCAAATTCAAATCCTGTTTGCACCGA
TATAAAGTTTAGAATCTTTATGGAGAGGGATTCGAAGGAGCTGTCTCTTG
GTATCAAGCATGCTCTTCCAGACAGTTTCATGGATGACTTCTTCAAAGAC
TCCACATTGGATGACGAGCCTCACCTTCGATACAAATCATTCAAAGGGAT
TCGAGAGGCCTTGCTACCTAACTCCGGCGTTGGGACCAGTGAGCACCCAG
CATATGAACAGTTTCATAAGGCTCTTCTCGTGAGAGCGGACCATTCCTGT
TCAAGTATGGATTTTGTACTCATTCCCAAACTTCCAGATATTCAACTTAT
GAATACATTTCTGTGTGGCATCGCCTACACCCGTTGTTGA

protein sequence of Ggra1217.t1

>Ggra1217.t1 ID=Ggra1217.t1|Name=Ggra1217.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=280bp
MVPLGYVCHPSYDCRCDPGKLISRQTALKHRTLAQNIAEEMGKVRFLPLP
EAIQDLSQLHSISDTLEDHSHSKYDSSPSTEVRNPGENEICSLQCTTSNL
ESHSMSLNRKIVHPHETDIGFNVGESTNTNSESALKSDISVEAKYENTEH
LKRSEAIPPNSNPVCTDIKFRIFMERDSKELSLGIKHALPDSFMDDFFKD
STLDDEPHLRYKSFKGIREALLPNSGVGTSEHPAYEQFHKALLVRADHSC
SSMDFVLIPKLPDIQLMNTFLCGIAYTRC*

mRNA from alignment at tig00000926_pilon:83795..84634+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1217.t1 ID=Ggra1217.t1|Name=Ggra1217.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000926_pilon:83795..84634+ (Gracilaria gracilis GNS1m male)
ATGGTGCCCTTAGGGTATGTTTGTCATCCCAGTTATGACTGTCGCTGTGA
TCCTGGAAAACTGATATCGAGACAGACGGCATTGAAACACAGAACTCTAG
CTCAAAATATTGCAGAGGAGATGGGCAAGGTGCGCTTCTTACCGCTTCCT
GAAGCCATCCAAGACCTCTCGCAACTTCATTCTATTTCGGATACATTGGA
AGATCATTCACATTCGAAATACGATAGTTCTCCAAGCACGGAAGTGAGGA
ATCCTGGAGAAAATGAAATTTGTTCTCTACAATGCACTACTTCAAATCTT
GAAAGCCACTCCATGTCTTTGAACCGAAAAATCGTCCATCCCCACGAAAC
TGATATCGGCTTCAATGTCGGTGAGTCGACCAACACCAATTCGGAGAGCG
CGCTAAAGTCCGATATCTCTGTCGAAGCCAAGTATGAGAATACGGAACAC
TTAAAGCGCTCCGAAGCTATCCCGCCAAATTCAAATCCTGTTTGCACCGA
TATAAAGTTTAGAATCTTTATGGAGAGGGATTCGAAGGAGCTGTCTCTTG
GTATCAAGCATGCTCTTCCAGACAGTTTCATGGATGACTTCTTCAAAGAC
TCCACATTGGATGACGAGCCTCACCTTCGATACAAATCATTCAAAGGGAT
TCGAGAGGCCTTGCTACCTAACTCCGGCGTTGGGACCAGTGAGCACCCAG
CATATGAACAGTTTCATAAGGCTCTTCTCGTGAGAGCGGACCATTCCTGT
TCAAGTATGGATTTTGTACTCATTCCCAAACTTCCAGATATTCAACTTAT
GAATACATTTCTGTGTGGCATCGCCTACACCCGTTGTTGA

Coding sequence (CDS) from alignment at tig00000926_pilon:83795..84634+

>Ggra1217.t1 ID=Ggra1217.t1|Name=Ggra1217.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=840bp|location=Sequence derived from alignment at tig00000926_pilon:83795..84634+ (Gracilaria gracilis GNS1m male)
ATGGTGCCCTTAGGGTATGTTTGTCATCCCAGTTATGACTGTCGCTGTGA
TCCTGGAAAACTGATATCGAGACAGACGGCATTGAAACACAGAACTCTAG
CTCAAAATATTGCAGAGGAGATGGGCAAGGTGCGCTTCTTACCGCTTCCT
GAAGCCATCCAAGACCTCTCGCAACTTCATTCTATTTCGGATACATTGGA
AGATCATTCACATTCGAAATACGATAGTTCTCCAAGCACGGAAGTGAGGA
ATCCTGGAGAAAATGAAATTTGTTCTCTACAATGCACTACTTCAAATCTT
GAAAGCCACTCCATGTCTTTGAACCGAAAAATCGTCCATCCCCACGAAAC
TGATATCGGCTTCAATGTCGGTGAGTCGACCAACACCAATTCGGAGAGCG
CGCTAAAGTCCGATATCTCTGTCGAAGCCAAGTATGAGAATACGGAACAC
TTAAAGCGCTCCGAAGCTATCCCGCCAAATTCAAATCCTGTTTGCACCGA
TATAAAGTTTAGAATCTTTATGGAGAGGGATTCGAAGGAGCTGTCTCTTG
GTATCAAGCATGCTCTTCCAGACAGTTTCATGGATGACTTCTTCAAAGAC
TCCACATTGGATGACGAGCCTCACCTTCGATACAAATCATTCAAAGGGAT
TCGAGAGGCCTTGCTACCTAACTCCGGCGTTGGGACCAGTGAGCACCCAG
CATATGAACAGTTTCATAAGGCTCTTCTCGTGAGAGCGGACCATTCCTGT
TCAAGTATGGATTTTGTACTCATTCCCAAACTTCCAGATATTCAACTTAT
GAATACATTTCTGTGTGGCATCGCCTACACCCGTTGTTGA