Ggra1955.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1955.t1
Unique NameGgra1955.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:18599..19639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705714.1
Preferred namePAQR3
PFAMsHlyIII
Max annot lvl2759|Eukaryota
KEGG koko:K07297
KEGG Pathwayko04152,ko04211,ko04920,ko04932,map04152,map04211,map04920,map04932
GOsGO:0000139,GO:0000165,GO:0001932,GO:0001933,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006464,GO:0006468,GO:0006469,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0016020,GO:0016310,GO:0019220,GO:0019222,GO:0019538,GO:0022008,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0031090,GO:0031323,GO:0031324,GO:0031344,GO:0031345,GO:0031399,GO:0031400,GO:0031984,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0033036,GO:0033135,GO:0033137,GO:0033365,GO:0033673,GO:0034067,GO:0034613,GO:0035556,GO:0036211,GO:0042325,GO:0042326,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045859,GO:0045936,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051641,GO:0051716,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0065007,GO:0065009,GO:0070727,GO:0071704,GO:0071900,GO:0071901,GO:0080090,GO:0098588,GO:0098791,GO:0120035,GO:1901564,GO:1902531,GO:1902532,GO:2000026
Evalue4.35e-42
EggNOG OGsCOG1272@1|root,KOG0748@2759|Eukaryota
Descriptionresponse to hormone
COG categoryT
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1955Ggra1955Gracilaria gracilis GNS1m malegenetig00000925_pilon 18599..19639 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1955.t1.stop1Ggra1955.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000925_pilon 18599..18601 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1955.t1.CDS1Ggra1955.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000925_pilon 18599..19639 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1955.t1.exon1Ggra1955.t1.exon1Gracilaria gracilis GNS1m maleexontig00000925_pilon 18599..19639 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1955.t1.start1Ggra1955.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000925_pilon 19637..19639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1955.t1Ggra1955.t1Gracilaria gracilis GNS1m malepolypeptidetig00000925_pilon 18599..19639 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1955.t1 ID=Ggra1955.t1|Name=Ggra1955.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=347bp
MTFTRAHARSRERLLTILELPSWMRDNDFLYGSYRPPHHSLRAIFIAAFF
TLHNDTINIWSHALGFLFFLGVGIYILGPATSVHRHVSRLAIACSQRAAL
TTADIYAHINTLGVSNFCPREHHPPSLVRSALSTLLNSHRIGLLPLILTA
VLCLFFSTIFHTFWVHSPKALRLLGKLDFLGISLLISGHAISGIYYAFYC
TPTVAHRYYALVVTAELATIPCIFAPTFGTPAARPFRVFVFAALACTTLL
PLLHSIWLHTAALYELLVGVGSAAAALTMYCIGAMFYVCRFPECCRVGKH
DRFFASHQLLHFAVLFGVGLHLFGCWTLLEYRIDVGCSVAPPVNSS*
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spliced messenger RNA

>Ggra1955.t1 ID=Ggra1955.t1|Name=Ggra1955.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000925_pilon:18599..19639- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTTCACGCGCGCGCACGCGCGGTCGAGGGAGCGGCTGCTGACCAT
TCTGGAGCTGCCGTCATGGATGAGGGACAACGACTTTCTGTACGGTAGCT
ACCGCCCGCCGCACCATTCGCTGCGAGCCATCTTCATCGCCGCCTTCTTC
ACGCTGCACAACGACACCATCAACATCTGGAGCCACGCGCTTGGCTTCTT
GTTCTTTCTGGGCGTGGGCATCTACATCCTGGGCCCGGCCACCTCCGTGC
ACCGCCATGTGTCGCGCTTGGCTATCGCGTGTTCGCAGCGCGCTGCGCTC
ACCACAGCCGACATCTACGCGCACATCAACACGTTGGGCGTGTCCAATTT
CTGCCCGCGGGAGCACCATCCGCCCTCTCTGGTTCGAAGCGCGCTGTCAA
CCCTGCTCAACTCGCATCGAATCGGCCTGCTTCCGCTCATTCTCACCGCC
GTGCTGTGCCTGTTCTTCTCCACCATCTTCCACACCTTCTGGGTGCACTC
GCCAAAGGCGCTGCGTCTGCTGGGCAAGCTGGACTTTCTGGGCATTTCGT
TGCTCATCAGCGGTCACGCCATCTCCGGCATCTACTACGCCTTCTACTGC
ACGCCCACAGTCGCGCACCGATACTACGCGCTGGTGGTCACGGCCGAACT
GGCCACCATTCCGTGCATCTTCGCCCCGACGTTCGGCACACCGGCCGCTC
GTCCATTCCGCGTCTTTGTGTTTGCCGCGCTGGCGTGCACCACGCTGCTG
CCGTTGTTGCACTCCATCTGGTTGCATACGGCGGCGCTTTATGAACTTTT
GGTTGGCGTTGGGTCTGCGGCTGCCGCGCTTACCATGTACTGCATAGGCG
CCATGTTCTACGTGTGCCGCTTTCCAGAGTGCTGCCGCGTGGGCAAGCAC
GATCGCTTCTTCGCGTCGCATCAACTGTTGCACTTTGCTGTGTTGTTCGG
CGTGGGCCTTCACCTGTTTGGCTGTTGGACGCTGCTGGAGTATCGCATTG
ACGTCGGTTGCTCCGTCGCTCCGCCTGTTAACAGTTCGTAG
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protein sequence of Ggra1955.t1

>Ggra1955.t1 ID=Ggra1955.t1|Name=Ggra1955.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=347bp
MTFTRAHARSRERLLTILELPSWMRDNDFLYGSYRPPHHSLRAIFIAAFF
TLHNDTINIWSHALGFLFFLGVGIYILGPATSVHRHVSRLAIACSQRAAL
TTADIYAHINTLGVSNFCPREHHPPSLVRSALSTLLNSHRIGLLPLILTA
VLCLFFSTIFHTFWVHSPKALRLLGKLDFLGISLLISGHAISGIYYAFYC
TPTVAHRYYALVVTAELATIPCIFAPTFGTPAARPFRVFVFAALACTTLL
PLLHSIWLHTAALYELLVGVGSAAAALTMYCIGAMFYVCRFPECCRVGKH
DRFFASHQLLHFAVLFGVGLHLFGCWTLLEYRIDVGCSVAPPVNSS*
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mRNA from alignment at tig00000925_pilon:18599..19639-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1955.t1 ID=Ggra1955.t1|Name=Ggra1955.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000925_pilon:18599..19639- (Gracilaria gracilis GNS1m male)
ATGACGTTCACGCGCGCGCACGCGCGGTCGAGGGAGCGGCTGCTGACCAT
TCTGGAGCTGCCGTCATGGATGAGGGACAACGACTTTCTGTACGGTAGCT
ACCGCCCGCCGCACCATTCGCTGCGAGCCATCTTCATCGCCGCCTTCTTC
ACGCTGCACAACGACACCATCAACATCTGGAGCCACGCGCTTGGCTTCTT
GTTCTTTCTGGGCGTGGGCATCTACATCCTGGGCCCGGCCACCTCCGTGC
ACCGCCATGTGTCGCGCTTGGCTATCGCGTGTTCGCAGCGCGCTGCGCTC
ACCACAGCCGACATCTACGCGCACATCAACACGTTGGGCGTGTCCAATTT
CTGCCCGCGGGAGCACCATCCGCCCTCTCTGGTTCGAAGCGCGCTGTCAA
CCCTGCTCAACTCGCATCGAATCGGCCTGCTTCCGCTCATTCTCACCGCC
GTGCTGTGCCTGTTCTTCTCCACCATCTTCCACACCTTCTGGGTGCACTC
GCCAAAGGCGCTGCGTCTGCTGGGCAAGCTGGACTTTCTGGGCATTTCGT
TGCTCATCAGCGGTCACGCCATCTCCGGCATCTACTACGCCTTCTACTGC
ACGCCCACAGTCGCGCACCGATACTACGCGCTGGTGGTCACGGCCGAACT
GGCCACCATTCCGTGCATCTTCGCCCCGACGTTCGGCACACCGGCCGCTC
GTCCATTCCGCGTCTTTGTGTTTGCCGCGCTGGCGTGCACCACGCTGCTG
CCGTTGTTGCACTCCATCTGGTTGCATACGGCGGCGCTTTATGAACTTTT
GGTTGGCGTTGGGTCTGCGGCTGCCGCGCTTACCATGTACTGCATAGGCG
CCATGTTCTACGTGTGCCGCTTTCCAGAGTGCTGCCGCGTGGGCAAGCAC
GATCGCTTCTTCGCGTCGCATCAACTGTTGCACTTTGCTGTGTTGTTCGG
CGTGGGCCTTCACCTGTTTGGCTGTTGGACGCTGCTGGAGTATCGCATTG
ACGTCGGTTGCTCCGTCGCTCCGCCTGTTAACAGTTCGTAG
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Coding sequence (CDS) from alignment at tig00000925_pilon:18599..19639-

>Ggra1955.t1 ID=Ggra1955.t1|Name=Ggra1955.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1041bp|location=Sequence derived from alignment at tig00000925_pilon:18599..19639- (Gracilaria gracilis GNS1m male)
ATGACGTTCACGCGCGCGCACGCGCGGTCGAGGGAGCGGCTGCTGACCAT
TCTGGAGCTGCCGTCATGGATGAGGGACAACGACTTTCTGTACGGTAGCT
ACCGCCCGCCGCACCATTCGCTGCGAGCCATCTTCATCGCCGCCTTCTTC
ACGCTGCACAACGACACCATCAACATCTGGAGCCACGCGCTTGGCTTCTT
GTTCTTTCTGGGCGTGGGCATCTACATCCTGGGCCCGGCCACCTCCGTGC
ACCGCCATGTGTCGCGCTTGGCTATCGCGTGTTCGCAGCGCGCTGCGCTC
ACCACAGCCGACATCTACGCGCACATCAACACGTTGGGCGTGTCCAATTT
CTGCCCGCGGGAGCACCATCCGCCCTCTCTGGTTCGAAGCGCGCTGTCAA
CCCTGCTCAACTCGCATCGAATCGGCCTGCTTCCGCTCATTCTCACCGCC
GTGCTGTGCCTGTTCTTCTCCACCATCTTCCACACCTTCTGGGTGCACTC
GCCAAAGGCGCTGCGTCTGCTGGGCAAGCTGGACTTTCTGGGCATTTCGT
TGCTCATCAGCGGTCACGCCATCTCCGGCATCTACTACGCCTTCTACTGC
ACGCCCACAGTCGCGCACCGATACTACGCGCTGGTGGTCACGGCCGAACT
GGCCACCATTCCGTGCATCTTCGCCCCGACGTTCGGCACACCGGCCGCTC
GTCCATTCCGCGTCTTTGTGTTTGCCGCGCTGGCGTGCACCACGCTGCTG
CCGTTGTTGCACTCCATCTGGTTGCATACGGCGGCGCTTTATGAACTTTT
GGTTGGCGTTGGGTCTGCGGCTGCCGCGCTTACCATGTACTGCATAGGCG
CCATGTTCTACGTGTGCCGCTTTCCAGAGTGCTGCCGCGTGGGCAAGCAC
GATCGCTTCTTCGCGTCGCATCAACTGTTGCACTTTGCTGTGTTGTTCGG
CGTGGGCCTTCACCTGTTTGGCTGTTGGACGCTGCTGGAGTATCGCATTG
ACGTCGGTTGCTCCGTCGCTCCGCCTGTTAACAGTTCGTAG
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