Ggra8412.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8412.t1
Unique NameGgra8412.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length704
Homology
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BLAST of Ggra8412.t1 vs. uniprot
Match: A0A2V3IKP8 (Myb-like domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKP8_9FLOR)

HSP 1 Score: 239 bits (610), Expect = 5.690e-67
Identity = 119/223 (53.36%), Postives = 156/223 (69.96%), Query Frame = 0 
Query:   55 TLALHSEIPSLQYAQWTLARRRAWDRRFSDPFSYFYHYCHPKFDSKLGRWDIQEHCLFLSAISRIPPIEKNWPVVSLLVPGRTGSDCRRYYHRIGRAGLITVRGTLRKRLFCIASISTFDENGNKNGRLSSSNPLFRKSALRRFWPSELPPVDDSLLKPFK--PQPDGLSKEQLDAVTHVPAHYEEHHRKGYTIRSFPRYSSEEELVKQARSRPVPCRLPLRP 275
            ++AL + +   QYA W+ ARRRAWDRR S P +YFYHYCHP F  +   W I+EH +FL+AISRI P+++NW  +SLLVPGRTGS CRRYY RIGRAG ITVRGT+RKRL C ASI TFD++G   GR+ SSNPLFR++AL +F PS LP VDDSLLKPF+  P+    S +QL A+TH+   +  H ++   +   P+  ++ + +      P+ CRL +RP
Sbjct:   56 SVALRAPVSDAQYAAWSSARRRAWDRRLSHPNAYFYHYCHPSFTPRRAPWRIEEHLIFLAAISRIAPLQRNWGAISLLVPGRTGSHCRRYYRRIGRAGFITVRGTIRKRLVCRASIPTFDQHGKSVGRMHSSNPLFRRNALSKFIPSTLPVVDDSLLKPFEHAPKAQPTSHQQLAALTHIRVQHA-HQQRHCQLGQAPKPQTKAQTIT-----PLVCRLRIRP 272
The following BLAST results are available for this feature:
BLAST of Ggra8412.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IKP85.690e-6753.36Myb-like domain-containing protein n=1 Tax=Gracila... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 104..155
e-value: 3.7E-6
score: 29.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 463..497
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 290..386
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 517..539
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 552..571
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 463..491
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 356..372
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 340..355
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 96..149
score: 6.69015
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 103..148
e-value: 1.11713E-4
score: 38.3254
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 94..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:498439..500550 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8412.t1Ggra8412.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 498439..500550 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8412.t1 ID=Ggra8412.t1|Name=Ggra8412.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=704bp
MAPAQHTEPSPPKPRRNARQLASRLARHGAAAARPVRAAQAQRRQLVSSS
TINDTLALHSEIPSLQYAQWTLARRRAWDRRFSDPFSYFYHYCHPKFDSK
LGRWDIQEHCLFLSAISRIPPIEKNWPVVSLLVPGRTGSDCRRYYHRIGR
AGLITVRGTLRKRLFCIASISTFDENGNKNGRLSSSNPLFRKSALRRFWP
SELPPVDDSLLKPFKPQPDGLSKEQLDAVTHVPAHYEEHHRKGYTIRSFP
RYSSEEELVKQARSRPVPCRLPLRPTLECVGATEPLTIKKQEPLPKVKKN
GNSKVASALESRQKDKKRSGKVSSSGSAESAGKLKLPRPSPQHGTSSIDS
NKEKSASGTKAPRVKKGDGAMLRRKQYSASDCTKANGVKPLDNAPNLVQS
STVSDMKEANPRAMVSMKQRVSGVRSQGSGTTAQVARQRESRNILEVEAH
SRVYNVVVPKKQMPTGSSSDTMIKSGDRGGQTQSTKNHGTGNGDVEDPDY
VMDMVLVDGSEYSPQLEIGDTGKETGQRNQKRVLAPSRSERASISFLINS
EEDETKTKRPRVEGGRTERSCKGTLHRDRQSSDRDKMEEMGLLLRIFAET
VDETGKTLGHQFERNRLLQRYNEFVLRVTLRSRVREGSWSPAVKLLRPNI
ERNTITEVVHESLCCPRCLDDTLDSWRGQLNEMMERQHAELISALRIAEV
MYV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf