Ggra8412.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8412.t1
Unique Name	Ggra8412.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	704

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:498439..500550 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5722.XP_001313419.1
PFAMs	Myb_DNA-binding
Max annot lvl	2759\|Eukaryota
Evalue	5.5e-11
EggNOG OGs	2D0MZ@1\|root,2SERW@2759\|Eukaryota
Description	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8412	Ggra8412	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 498439..500550 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8412.t1.stop1	Ggra8412.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 498439..498441 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8412.t1.CDS1	Ggra8412.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 498439..500550 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8412.t1.exon1	Ggra8412.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 498439..500550 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8412.t1.start1	Ggra8412.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 500548..500550 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8412.t1	Ggra8412.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 498439..500550 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:498439..500550-
coding sequence from alignment at tig00000041_pilon:498439..500550-

mRNA sequence

>Ggra8412.t1 ID=Ggra8412.t1|Name=Ggra8412.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=704bp
MAPAQHTEPSPPKPRRNARQLASRLARHGAAAARPVRAAQAQRRQLVSSS
TINDTLALHSEIPSLQYAQWTLARRRAWDRRFSDPFSYFYHYCHPKFDSK
LGRWDIQEHCLFLSAISRIPPIEKNWPVVSLLVPGRTGSDCRRYYHRIGR
AGLITVRGTLRKRLFCIASISTFDENGNKNGRLSSSNPLFRKSALRRFWP
SELPPVDDSLLKPFKPQPDGLSKEQLDAVTHVPAHYEEHHRKGYTIRSFP
RYSSEEELVKQARSRPVPCRLPLRPTLECVGATEPLTIKKQEPLPKVKKN
GNSKVASALESRQKDKKRSGKVSSSGSAESAGKLKLPRPSPQHGTSSIDS
NKEKSASGTKAPRVKKGDGAMLRRKQYSASDCTKANGVKPLDNAPNLVQS
STVSDMKEANPRAMVSMKQRVSGVRSQGSGTTAQVARQRESRNILEVEAH
SRVYNVVVPKKQMPTGSSSDTMIKSGDRGGQTQSTKNHGTGNGDVEDPDY
VMDMVLVDGSEYSPQLEIGDTGKETGQRNQKRVLAPSRSERASISFLINS
EEDETKTKRPRVEGGRTERSCKGTLHRDRQSSDRDKMEEMGLLLRIFAET
VDETGKTLGHQFERNRLLQRYNEFVLRVTLRSRVREGSWSPAVKLLRPNI
ERNTITEVVHESLCCPRCLDDTLDSWRGQLNEMMERQHAELISALRIAEV
MYV*

spliced messenger RNA

>Ggra8412.t1 ID=Ggra8412.t1|Name=Ggra8412.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2112bp|location=Sequence derived from alignment at tig00000041_pilon:498439..500550- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCGCCCAGCACACGGAGCCATCCCCGCCCAAACCGCGCCGCAA
CGCCAGGCAGCTTGCTTCGCGGCTAGCACGACATGGCGCTGCGGCTGCAC
GTCCTGTGAGAGCCGCGCAAGCACAAAGACGCCAGCTCGTGTCAAGCAGC
ACTATCAACGACACGCTAGCATTGCACTCGGAGATTCCGTCCTTGCAGTA
CGCCCAATGGACCTTAGCTCGTCGTCGGGCTTGGGATAGACGCTTCTCGG
ATCCTTTCTCCTATTTCTATCACTACTGTCACCCCAAGTTTGATTCAAAA
CTCGGCCGCTGGGATATCCAAGAGCACTGCTTGTTCTTGTCAGCCATTTC
TCGAATCCCGCCAATCGAGAAGAACTGGCCGGTGGTGAGCCTTCTTGTGC
CGGGCAGAACAGGCTCCGATTGCAGAAGATATTATCATCGAATCGGTCGG
GCAGGCTTAATCACCGTCAGGGGCACTCTGAGGAAGCGCCTCTTTTGTAT
TGCTTCTATCAGCACTTTCGACGAGAATGGTAACAAGAATGGTCGTTTGT
CCAGTTCAAACCCTCTCTTCCGCAAAAGTGCCTTGAGAAGATTCTGGCCT
TCTGAGCTGCCTCCTGTTGATGACTCACTATTGAAGCCTTTCAAGCCTCA
ACCGGACGGTCTTTCAAAAGAGCAGCTTGATGCCGTCACACATGTTCCGG
CCCATTATGAAGAACATCACCGAAAGGGATACACGATCAGGAGCTTCCCA
AGATACAGTTCGGAGGAAGAACTTGTCAAGCAAGCAAGGAGCAGGCCGGT
TCCATGTCGCCTCCCACTCCGCCCAACTCTGGAATGCGTTGGGGCTACTG
AACCGTTGACCATAAAGAAACAGGAGCCCCTGCCGAAGGTGAAGAAGAAC
GGAAACAGTAAGGTCGCGTCCGCATTGGAATCCCGTCAAAAAGACAAGAA
GAGAAGTGGTAAAGTCAGCTCTTCCGGATCAGCAGAATCCGCTGGAAAAC
TCAAGTTGCCACGACCTTCTCCTCAACACGGGACCTCGTCCATCGATTCG
AACAAAGAAAAATCGGCAAGTGGAACGAAAGCACCACGAGTAAAGAAAGG
AGATGGGGCTATGCTTAGAAGGAAGCAGTATTCCGCAAGTGATTGTACCA
AAGCGAACGGAGTGAAGCCGCTCGACAACGCACCGAACCTCGTGCAATCA
TCAACAGTCAGTGATATGAAGGAAGCAAATCCGAGAGCTATGGTTTCTAT
GAAACAGAGAGTCTCAGGCGTTAGGTCTCAAGGTTCAGGTACCACGGCCC
AGGTTGCAAGGCAAAGAGAATCCAGGAATATCCTGGAAGTGGAAGCACAT
TCCCGTGTCTATAATGTAGTTGTGCCAAAAAAACAGATGCCAACGGGCAG
CTCTTCGGACACAATGATTAAATCTGGTGATCGTGGTGGTCAGACTCAAT
CCACTAAGAATCATGGCACTGGTAATGGCGATGTTGAGGATCCAGATTAT
GTAATGGATATGGTTCTTGTTGATGGGTCAGAATACTCTCCACAGTTGGA
GATAGGCGATACTGGGAAGGAGACCGGGCAGCGCAACCAGAAGCGCGTCT
TAGCTCCAAGTCGTTCGGAGAGGGCATCAATCTCCTTCCTTATCAATAGT
GAAGAAGACGAGACAAAAACGAAACGACCACGAGTTGAAGGCGGAAGGAC
AGAAAGATCCTGCAAGGGAACTTTGCATCGAGATCGTCAAAGCTCAGACA
GGGACAAAATGGAGGAAATGGGTCTCCTTTTGCGAATATTTGCTGAAACC
GTTGACGAAACAGGAAAGACTCTCGGGCATCAATTTGAGCGAAACAGGTT
GCTACAGAGATACAACGAGTTCGTTTTACGGGTAACGCTACGCTCAAGAG
TAAGAGAGGGTTCATGGTCTCCTGCTGTGAAGCTTCTTCGACCAAACATA
GAACGGAACACAATCACTGAAGTAGTCCACGAATCTCTTTGTTGTCCACG
GTGTCTCGATGACACTCTGGACAGTTGGAGGGGACAACTCAATGAAATGA
TGGAGAGGCAGCATGCCGAATTGATTTCGGCGCTTAGAATTGCTGAAGTC
ATGTACGTGTAG

protein sequence of Ggra8412.t1

>Ggra8412.t1 ID=Ggra8412.t1|Name=Ggra8412.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=704bp
MAPAQHTEPSPPKPRRNARQLASRLARHGAAAARPVRAAQAQRRQLVSSS
TINDTLALHSEIPSLQYAQWTLARRRAWDRRFSDPFSYFYHYCHPKFDSK
LGRWDIQEHCLFLSAISRIPPIEKNWPVVSLLVPGRTGSDCRRYYHRIGR
AGLITVRGTLRKRLFCIASISTFDENGNKNGRLSSSNPLFRKSALRRFWP
SELPPVDDSLLKPFKPQPDGLSKEQLDAVTHVPAHYEEHHRKGYTIRSFP
RYSSEEELVKQARSRPVPCRLPLRPTLECVGATEPLTIKKQEPLPKVKKN
GNSKVASALESRQKDKKRSGKVSSSGSAESAGKLKLPRPSPQHGTSSIDS
NKEKSASGTKAPRVKKGDGAMLRRKQYSASDCTKANGVKPLDNAPNLVQS
STVSDMKEANPRAMVSMKQRVSGVRSQGSGTTAQVARQRESRNILEVEAH
SRVYNVVVPKKQMPTGSSSDTMIKSGDRGGQTQSTKNHGTGNGDVEDPDY
VMDMVLVDGSEYSPQLEIGDTGKETGQRNQKRVLAPSRSERASISFLINS
EEDETKTKRPRVEGGRTERSCKGTLHRDRQSSDRDKMEEMGLLLRIFAET
VDETGKTLGHQFERNRLLQRYNEFVLRVTLRSRVREGSWSPAVKLLRPNI
ERNTITEVVHESLCCPRCLDDTLDSWRGQLNEMMERQHAELISALRIAEV
MYV*

mRNA from alignment at tig00000041_pilon:498439..500550-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8412.t1 ID=Ggra8412.t1|Name=Ggra8412.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2112bp|location=Sequence derived from alignment at tig00000041_pilon:498439..500550- (Gracilaria gracilis GNS1m male)
ATGGCTCCCGCCCAGCACACGGAGCCATCCCCGCCCAAACCGCGCCGCAA
CGCCAGGCAGCTTGCTTCGCGGCTAGCACGACATGGCGCTGCGGCTGCAC
GTCCTGTGAGAGCCGCGCAAGCACAAAGACGCCAGCTCGTGTCAAGCAGC
ACTATCAACGACACGCTAGCATTGCACTCGGAGATTCCGTCCTTGCAGTA
CGCCCAATGGACCTTAGCTCGTCGTCGGGCTTGGGATAGACGCTTCTCGG
ATCCTTTCTCCTATTTCTATCACTACTGTCACCCCAAGTTTGATTCAAAA
CTCGGCCGCTGGGATATCCAAGAGCACTGCTTGTTCTTGTCAGCCATTTC
TCGAATCCCGCCAATCGAGAAGAACTGGCCGGTGGTGAGCCTTCTTGTGC
CGGGCAGAACAGGCTCCGATTGCAGAAGATATTATCATCGAATCGGTCGG
GCAGGCTTAATCACCGTCAGGGGCACTCTGAGGAAGCGCCTCTTTTGTAT
TGCTTCTATCAGCACTTTCGACGAGAATGGTAACAAGAATGGTCGTTTGT
CCAGTTCAAACCCTCTCTTCCGCAAAAGTGCCTTGAGAAGATTCTGGCCT
TCTGAGCTGCCTCCTGTTGATGACTCACTATTGAAGCCTTTCAAGCCTCA
ACCGGACGGTCTTTCAAAAGAGCAGCTTGATGCCGTCACACATGTTCCGG
CCCATTATGAAGAACATCACCGAAAGGGATACACGATCAGGAGCTTCCCA
AGATACAGTTCGGAGGAAGAACTTGTCAAGCAAGCAAGGAGCAGGCCGGT
TCCATGTCGCCTCCCACTCCGCCCAACTCTGGAATGCGTTGGGGCTACTG
AACCGTTGACCATAAAGAAACAGGAGCCCCTGCCGAAGGTGAAGAAGAAC
GGAAACAGTAAGGTCGCGTCCGCATTGGAATCCCGTCAAAAAGACAAGAA
GAGAAGTGGTAAAGTCAGCTCTTCCGGATCAGCAGAATCCGCTGGAAAAC
TCAAGTTGCCACGACCTTCTCCTCAACACGGGACCTCGTCCATCGATTCG
AACAAAGAAAAATCGGCAAGTGGAACGAAAGCACCACGAGTAAAGAAAGG
AGATGGGGCTATGCTTAGAAGGAAGCAGTATTCCGCAAGTGATTGTACCA
AAGCGAACGGAGTGAAGCCGCTCGACAACGCACCGAACCTCGTGCAATCA
TCAACAGTCAGTGATATGAAGGAAGCAAATCCGAGAGCTATGGTTTCTAT
GAAACAGAGAGTCTCAGGCGTTAGGTCTCAAGGTTCAGGTACCACGGCCC
AGGTTGCAAGGCAAAGAGAATCCAGGAATATCCTGGAAGTGGAAGCACAT
TCCCGTGTCTATAATGTAGTTGTGCCAAAAAAACAGATGCCAACGGGCAG
CTCTTCGGACACAATGATTAAATCTGGTGATCGTGGTGGTCAGACTCAAT
CCACTAAGAATCATGGCACTGGTAATGGCGATGTTGAGGATCCAGATTAT
GTAATGGATATGGTTCTTGTTGATGGGTCAGAATACTCTCCACAGTTGGA
GATAGGCGATACTGGGAAGGAGACCGGGCAGCGCAACCAGAAGCGCGTCT
TAGCTCCAAGTCGTTCGGAGAGGGCATCAATCTCCTTCCTTATCAATAGT
GAAGAAGACGAGACAAAAACGAAACGACCACGAGTTGAAGGCGGAAGGAC
AGAAAGATCCTGCAAGGGAACTTTGCATCGAGATCGTCAAAGCTCAGACA
GGGACAAAATGGAGGAAATGGGTCTCCTTTTGCGAATATTTGCTGAAACC
GTTGACGAAACAGGAAAGACTCTCGGGCATCAATTTGAGCGAAACAGGTT
GCTACAGAGATACAACGAGTTCGTTTTACGGGTAACGCTACGCTCAAGAG
TAAGAGAGGGTTCATGGTCTCCTGCTGTGAAGCTTCTTCGACCAAACATA
GAACGGAACACAATCACTGAAGTAGTCCACGAATCTCTTTGTTGTCCACG
GTGTCTCGATGACACTCTGGACAGTTGGAGGGGACAACTCAATGAAATGA
TGGAGAGGCAGCATGCCGAATTGATTTCGGCGCTTAGAATTGCTGAAGTC
ATGTACGTGTAG

Coding sequence (CDS) from alignment at tig00000041_pilon:498439..500550-

>Ggra8412.t1 ID=Ggra8412.t1|Name=Ggra8412.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2112bp|location=Sequence derived from alignment at tig00000041_pilon:498439..500550- (Gracilaria gracilis GNS1m male)
ATGGCTCCCGCCCAGCACACGGAGCCATCCCCGCCCAAACCGCGCCGCAA
CGCCAGGCAGCTTGCTTCGCGGCTAGCACGACATGGCGCTGCGGCTGCAC
GTCCTGTGAGAGCCGCGCAAGCACAAAGACGCCAGCTCGTGTCAAGCAGC
ACTATCAACGACACGCTAGCATTGCACTCGGAGATTCCGTCCTTGCAGTA
CGCCCAATGGACCTTAGCTCGTCGTCGGGCTTGGGATAGACGCTTCTCGG
ATCCTTTCTCCTATTTCTATCACTACTGTCACCCCAAGTTTGATTCAAAA
CTCGGCCGCTGGGATATCCAAGAGCACTGCTTGTTCTTGTCAGCCATTTC
TCGAATCCCGCCAATCGAGAAGAACTGGCCGGTGGTGAGCCTTCTTGTGC
CGGGCAGAACAGGCTCCGATTGCAGAAGATATTATCATCGAATCGGTCGG
GCAGGCTTAATCACCGTCAGGGGCACTCTGAGGAAGCGCCTCTTTTGTAT
TGCTTCTATCAGCACTTTCGACGAGAATGGTAACAAGAATGGTCGTTTGT
CCAGTTCAAACCCTCTCTTCCGCAAAAGTGCCTTGAGAAGATTCTGGCCT
TCTGAGCTGCCTCCTGTTGATGACTCACTATTGAAGCCTTTCAAGCCTCA
ACCGGACGGTCTTTCAAAAGAGCAGCTTGATGCCGTCACACATGTTCCGG
CCCATTATGAAGAACATCACCGAAAGGGATACACGATCAGGAGCTTCCCA
AGATACAGTTCGGAGGAAGAACTTGTCAAGCAAGCAAGGAGCAGGCCGGT
TCCATGTCGCCTCCCACTCCGCCCAACTCTGGAATGCGTTGGGGCTACTG
AACCGTTGACCATAAAGAAACAGGAGCCCCTGCCGAAGGTGAAGAAGAAC
GGAAACAGTAAGGTCGCGTCCGCATTGGAATCCCGTCAAAAAGACAAGAA
GAGAAGTGGTAAAGTCAGCTCTTCCGGATCAGCAGAATCCGCTGGAAAAC
TCAAGTTGCCACGACCTTCTCCTCAACACGGGACCTCGTCCATCGATTCG
AACAAAGAAAAATCGGCAAGTGGAACGAAAGCACCACGAGTAAAGAAAGG
AGATGGGGCTATGCTTAGAAGGAAGCAGTATTCCGCAAGTGATTGTACCA
AAGCGAACGGAGTGAAGCCGCTCGACAACGCACCGAACCTCGTGCAATCA
TCAACAGTCAGTGATATGAAGGAAGCAAATCCGAGAGCTATGGTTTCTAT
GAAACAGAGAGTCTCAGGCGTTAGGTCTCAAGGTTCAGGTACCACGGCCC
AGGTTGCAAGGCAAAGAGAATCCAGGAATATCCTGGAAGTGGAAGCACAT
TCCCGTGTCTATAATGTAGTTGTGCCAAAAAAACAGATGCCAACGGGCAG
CTCTTCGGACACAATGATTAAATCTGGTGATCGTGGTGGTCAGACTCAAT
CCACTAAGAATCATGGCACTGGTAATGGCGATGTTGAGGATCCAGATTAT
GTAATGGATATGGTTCTTGTTGATGGGTCAGAATACTCTCCACAGTTGGA
GATAGGCGATACTGGGAAGGAGACCGGGCAGCGCAACCAGAAGCGCGTCT
TAGCTCCAAGTCGTTCGGAGAGGGCATCAATCTCCTTCCTTATCAATAGT
GAAGAAGACGAGACAAAAACGAAACGACCACGAGTTGAAGGCGGAAGGAC
AGAAAGATCCTGCAAGGGAACTTTGCATCGAGATCGTCAAAGCTCAGACA
GGGACAAAATGGAGGAAATGGGTCTCCTTTTGCGAATATTTGCTGAAACC
GTTGACGAAACAGGAAAGACTCTCGGGCATCAATTTGAGCGAAACAGGTT
GCTACAGAGATACAACGAGTTCGTTTTACGGGTAACGCTACGCTCAAGAG
TAAGAGAGGGTTCATGGTCTCCTGCTGTGAAGCTTCTTCGACCAAACATA
GAACGGAACACAATCACTGAAGTAGTCCACGAATCTCTTTGTTGTCCACG
GTGTCTCGATGACACTCTGGACAGTTGGAGGGGACAACTCAATGAAATGA
TGGAGAGGCAGCATGCCGAATTGATTTCGGCGCTTAGAATTGCTGAAGTC
ATGTACGTGTAG