Ggra8481.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8481.t1
Unique Name	Ggra8481.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	547

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:835082..836722 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706629.1
PFAMs	ATP-grasp_4
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00064,RC00090
KEGG ko	ko:K14755
KEGG Reaction	R00910,R00912,R01164,R01991,R03286
KEGG Pathway	ko00330,ko00340,ko00410,map00330,map00340,map00410
Evalue	1.01e-189
EggNOG OGs	COG0439@1\|root,2RN4Y@2759\|Eukaryota
EC	6.3.2.11
Description	ATP-grasp domain
COG category	I
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8481	Ggra8481	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 835082..836722 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8481.t1.stop1	Ggra8481.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 835082..835084 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8481.t1.CDS1	Ggra8481.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 835082..836722 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8481.t1.exon1	Ggra8481.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 835082..836722 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8481.t1.start1	Ggra8481.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 836720..836722 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8481.t1	Ggra8481.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 835082..836722 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:835082..836722-
coding sequence from alignment at tig00000041_pilon:835082..836722-

mRNA sequence

>Ggra8481.t1 ID=Ggra8481.t1|Name=Ggra8481.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=547bp
MASYGSDTVAFALNKRHLPRSQVEAIPDVDDDDDDRSSTGLPSSLRANFL
PPGAQLGDVDPSSYTRYGSFRDQSPFFSPVFAHLPAVRPDKLRVASPETQ
NLRRKLMRDSNVLIVQGGYEGKSFIYDRLKSLGVNIYMMDGPGSVWSKAA
KEGAIAEFIELDFTAYDTVFERAMDAILDCTVEGKFDAVTTYYEDAVPLA
ARIATALGVETNPIESCEKARNKRRTRETMADACLPVPRFKRVLKADDIP
AACDYVGFPIILKPVFGAASMGVTRAETVQDAVQAYEKLFGTFDVEEDTI
WAQGTEMVIEEYYDGDEFDVDILLSEGTVVYAKVSDNWACWEPWFQETGT
NCPSSYPEAKQAEIVKLAIDSTLALGFRNGCFHVELRYTKRGPRLIEVNA
RMGGVSVRDANLLAWGVDLVEEHCMSALKIPIRPLTPKQPLQFMAESALN
APYSGVINEDDWLAFARQSKLVRKTSYLKQKGDKVCGPEDGIPDWIGEIV
VVSERSTEEAVMEIKRIVDSCKVPITASVPGNEREFFFPGSSHPFS*

spliced messenger RNA

>Ggra8481.t1 ID=Ggra8481.t1|Name=Ggra8481.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00000041_pilon:835082..836722- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCTACGGCTCCGACACCGTCGCCTTCGCGCTCAACAAGCGCCA
TCTGCCGCGCTCGCAGGTGGAGGCCATTCCCGACGTGGACGACGACGACG
ACGATCGCAGCAGTACCGGTCTTCCGTCCTCGCTGCGCGCCAACTTTCTT
CCCCCCGGCGCGCAGCTTGGCGACGTTGATCCCAGCTCGTACACGCGCTA
TGGATCCTTTCGCGATCAATCGCCCTTTTTCTCGCCCGTGTTCGCACATC
TTCCAGCCGTGCGTCCCGACAAGCTGCGCGTCGCATCGCCCGAAACACAG
AACCTTCGTCGCAAGCTCATGCGCGATTCCAACGTGCTCATCGTGCAGGG
CGGCTATGAGGGAAAGAGCTTCATTTACGATCGCCTCAAATCGCTCGGCG
TCAATATCTACATGATGGACGGGCCTGGTTCCGTGTGGAGCAAAGCCGCC
AAAGAAGGAGCCATCGCAGAGTTTATAGAGCTCGATTTCACCGCCTATGA
CACCGTGTTTGAGCGCGCCATGGACGCAATCCTGGATTGCACTGTCGAAG
GAAAGTTTGATGCTGTCACCACGTATTACGAAGACGCAGTCCCTCTGGCC
GCTCGCATTGCCACTGCGCTTGGAGTAGAGACCAACCCCATTGAAAGCTG
TGAAAAGGCTCGCAACAAGCGCAGAACCCGCGAGACCATGGCTGATGCTT
GTTTGCCCGTTCCGCGTTTCAAAAGAGTTCTCAAGGCCGATGATATTCCA
GCCGCTTGTGATTACGTAGGATTTCCCATCATTCTTAAGCCCGTGTTCGG
CGCTGCCTCCATGGGTGTCACACGCGCCGAAACTGTGCAGGATGCCGTGC
AGGCGTATGAGAAACTATTTGGCACCTTTGATGTCGAGGAGGATACCATC
TGGGCCCAAGGAACAGAAATGGTAATCGAGGAATACTATGACGGAGACGA
GTTCGATGTCGATATTCTGCTTTCCGAAGGCACTGTTGTCTATGCCAAGG
TATCCGATAACTGGGCATGCTGGGAACCATGGTTTCAAGAAACAGGCACT
AACTGCCCTTCCTCCTACCCAGAAGCTAAGCAGGCAGAAATTGTCAAGCT
GGCCATTGACAGCACCTTGGCTTTGGGCTTCAGAAACGGCTGCTTCCATG
TAGAATTGCGATATACCAAGCGTGGACCTCGTCTAATCGAAGTCAACGCC
AGAATGGGGGGTGTCTCTGTCCGTGATGCGAACCTGCTTGCGTGGGGAGT
GGATTTGGTAGAAGAGCACTGCATGAGCGCTCTGAAAATCCCCATAAGGC
CTTTAACACCAAAGCAGCCGCTCCAGTTCATGGCAGAATCTGCACTCAAT
GCCCCGTATTCTGGTGTCATAAACGAAGACGACTGGCTTGCGTTTGCTAG
GCAAAGCAAGTTGGTGCGGAAGACGAGTTATCTAAAGCAAAAAGGGGACA
AGGTTTGTGGTCCAGAGGACGGTATTCCCGATTGGATTGGAGAAATAGTC
GTTGTTAGTGAACGCAGCACGGAGGAAGCCGTGATGGAAATTAAGAGGAT
TGTAGACAGTTGCAAGGTTCCGATCACCGCTTCAGTCCCTGGTAACGAGC
GAGAGTTTTTCTTCCCGGGCAGCAGTCATCCTTTTTCCTAG

protein sequence of Ggra8481.t1

>Ggra8481.t1 ID=Ggra8481.t1|Name=Ggra8481.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=547bp
MASYGSDTVAFALNKRHLPRSQVEAIPDVDDDDDDRSSTGLPSSLRANFL
PPGAQLGDVDPSSYTRYGSFRDQSPFFSPVFAHLPAVRPDKLRVASPETQ
NLRRKLMRDSNVLIVQGGYEGKSFIYDRLKSLGVNIYMMDGPGSVWSKAA
KEGAIAEFIELDFTAYDTVFERAMDAILDCTVEGKFDAVTTYYEDAVPLA
ARIATALGVETNPIESCEKARNKRRTRETMADACLPVPRFKRVLKADDIP
AACDYVGFPIILKPVFGAASMGVTRAETVQDAVQAYEKLFGTFDVEEDTI
WAQGTEMVIEEYYDGDEFDVDILLSEGTVVYAKVSDNWACWEPWFQETGT
NCPSSYPEAKQAEIVKLAIDSTLALGFRNGCFHVELRYTKRGPRLIEVNA
RMGGVSVRDANLLAWGVDLVEEHCMSALKIPIRPLTPKQPLQFMAESALN
APYSGVINEDDWLAFARQSKLVRKTSYLKQKGDKVCGPEDGIPDWIGEIV
VVSERSTEEAVMEIKRIVDSCKVPITASVPGNEREFFFPGSSHPFS*

mRNA from alignment at tig00000041_pilon:835082..836722-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8481.t1 ID=Ggra8481.t1|Name=Ggra8481.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00000041_pilon:835082..836722- (Gracilaria gracilis GNS1m male)
ATGGCTTCCTACGGCTCCGACACCGTCGCCTTCGCGCTCAACAAGCGCCA
TCTGCCGCGCTCGCAGGTGGAGGCCATTCCCGACGTGGACGACGACGACG
ACGATCGCAGCAGTACCGGTCTTCCGTCCTCGCTGCGCGCCAACTTTCTT
CCCCCCGGCGCGCAGCTTGGCGACGTTGATCCCAGCTCGTACACGCGCTA
TGGATCCTTTCGCGATCAATCGCCCTTTTTCTCGCCCGTGTTCGCACATC
TTCCAGCCGTGCGTCCCGACAAGCTGCGCGTCGCATCGCCCGAAACACAG
AACCTTCGTCGCAAGCTCATGCGCGATTCCAACGTGCTCATCGTGCAGGG
CGGCTATGAGGGAAAGAGCTTCATTTACGATCGCCTCAAATCGCTCGGCG
TCAATATCTACATGATGGACGGGCCTGGTTCCGTGTGGAGCAAAGCCGCC
AAAGAAGGAGCCATCGCAGAGTTTATAGAGCTCGATTTCACCGCCTATGA
CACCGTGTTTGAGCGCGCCATGGACGCAATCCTGGATTGCACTGTCGAAG
GAAAGTTTGATGCTGTCACCACGTATTACGAAGACGCAGTCCCTCTGGCC
GCTCGCATTGCCACTGCGCTTGGAGTAGAGACCAACCCCATTGAAAGCTG
TGAAAAGGCTCGCAACAAGCGCAGAACCCGCGAGACCATGGCTGATGCTT
GTTTGCCCGTTCCGCGTTTCAAAAGAGTTCTCAAGGCCGATGATATTCCA
GCCGCTTGTGATTACGTAGGATTTCCCATCATTCTTAAGCCCGTGTTCGG
CGCTGCCTCCATGGGTGTCACACGCGCCGAAACTGTGCAGGATGCCGTGC
AGGCGTATGAGAAACTATTTGGCACCTTTGATGTCGAGGAGGATACCATC
TGGGCCCAAGGAACAGAAATGGTAATCGAGGAATACTATGACGGAGACGA
GTTCGATGTCGATATTCTGCTTTCCGAAGGCACTGTTGTCTATGCCAAGG
TATCCGATAACTGGGCATGCTGGGAACCATGGTTTCAAGAAACAGGCACT
AACTGCCCTTCCTCCTACCCAGAAGCTAAGCAGGCAGAAATTGTCAAGCT
GGCCATTGACAGCACCTTGGCTTTGGGCTTCAGAAACGGCTGCTTCCATG
TAGAATTGCGATATACCAAGCGTGGACCTCGTCTAATCGAAGTCAACGCC
AGAATGGGGGGTGTCTCTGTCCGTGATGCGAACCTGCTTGCGTGGGGAGT
GGATTTGGTAGAAGAGCACTGCATGAGCGCTCTGAAAATCCCCATAAGGC
CTTTAACACCAAAGCAGCCGCTCCAGTTCATGGCAGAATCTGCACTCAAT
GCCCCGTATTCTGGTGTCATAAACGAAGACGACTGGCTTGCGTTTGCTAG
GCAAAGCAAGTTGGTGCGGAAGACGAGTTATCTAAAGCAAAAAGGGGACA
AGGTTTGTGGTCCAGAGGACGGTATTCCCGATTGGATTGGAGAAATAGTC
GTTGTTAGTGAACGCAGCACGGAGGAAGCCGTGATGGAAATTAAGAGGAT
TGTAGACAGTTGCAAGGTTCCGATCACCGCTTCAGTCCCTGGTAACGAGC
GAGAGTTTTTCTTCCCGGGCAGCAGTCATCCTTTTTCCTAG

Coding sequence (CDS) from alignment at tig00000041_pilon:835082..836722-

>Ggra8481.t1 ID=Ggra8481.t1|Name=Ggra8481.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1641bp|location=Sequence derived from alignment at tig00000041_pilon:835082..836722- (Gracilaria gracilis GNS1m male)
ATGGCTTCCTACGGCTCCGACACCGTCGCCTTCGCGCTCAACAAGCGCCA
TCTGCCGCGCTCGCAGGTGGAGGCCATTCCCGACGTGGACGACGACGACG
ACGATCGCAGCAGTACCGGTCTTCCGTCCTCGCTGCGCGCCAACTTTCTT
CCCCCCGGCGCGCAGCTTGGCGACGTTGATCCCAGCTCGTACACGCGCTA
TGGATCCTTTCGCGATCAATCGCCCTTTTTCTCGCCCGTGTTCGCACATC
TTCCAGCCGTGCGTCCCGACAAGCTGCGCGTCGCATCGCCCGAAACACAG
AACCTTCGTCGCAAGCTCATGCGCGATTCCAACGTGCTCATCGTGCAGGG
CGGCTATGAGGGAAAGAGCTTCATTTACGATCGCCTCAAATCGCTCGGCG
TCAATATCTACATGATGGACGGGCCTGGTTCCGTGTGGAGCAAAGCCGCC
AAAGAAGGAGCCATCGCAGAGTTTATAGAGCTCGATTTCACCGCCTATGA
CACCGTGTTTGAGCGCGCCATGGACGCAATCCTGGATTGCACTGTCGAAG
GAAAGTTTGATGCTGTCACCACGTATTACGAAGACGCAGTCCCTCTGGCC
GCTCGCATTGCCACTGCGCTTGGAGTAGAGACCAACCCCATTGAAAGCTG
TGAAAAGGCTCGCAACAAGCGCAGAACCCGCGAGACCATGGCTGATGCTT
GTTTGCCCGTTCCGCGTTTCAAAAGAGTTCTCAAGGCCGATGATATTCCA
GCCGCTTGTGATTACGTAGGATTTCCCATCATTCTTAAGCCCGTGTTCGG
CGCTGCCTCCATGGGTGTCACACGCGCCGAAACTGTGCAGGATGCCGTGC
AGGCGTATGAGAAACTATTTGGCACCTTTGATGTCGAGGAGGATACCATC
TGGGCCCAAGGAACAGAAATGGTAATCGAGGAATACTATGACGGAGACGA
GTTCGATGTCGATATTCTGCTTTCCGAAGGCACTGTTGTCTATGCCAAGG
TATCCGATAACTGGGCATGCTGGGAACCATGGTTTCAAGAAACAGGCACT
AACTGCCCTTCCTCCTACCCAGAAGCTAAGCAGGCAGAAATTGTCAAGCT
GGCCATTGACAGCACCTTGGCTTTGGGCTTCAGAAACGGCTGCTTCCATG
TAGAATTGCGATATACCAAGCGTGGACCTCGTCTAATCGAAGTCAACGCC
AGAATGGGGGGTGTCTCTGTCCGTGATGCGAACCTGCTTGCGTGGGGAGT
GGATTTGGTAGAAGAGCACTGCATGAGCGCTCTGAAAATCCCCATAAGGC
CTTTAACACCAAAGCAGCCGCTCCAGTTCATGGCAGAATCTGCACTCAAT
GCCCCGTATTCTGGTGTCATAAACGAAGACGACTGGCTTGCGTTTGCTAG
GCAAAGCAAGTTGGTGCGGAAGACGAGTTATCTAAAGCAAAAAGGGGACA
AGGTTTGTGGTCCAGAGGACGGTATTCCCGATTGGATTGGAGAAATAGTC
GTTGTTAGTGAACGCAGCACGGAGGAAGCCGTGATGGAAATTAAGAGGAT
TGTAGACAGTTGCAAGGTTCCGATCACCGCTTCAGTCCCTGGTAACGAGC
GAGAGTTTTTCTTCCCGGGCAGCAGTCATCCTTTTTCCTAG