Ggra8472.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8472.t1
Unique NameGgra8472.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length206
Homology
BLAST of Ggra8472.t1 vs. uniprot
Match: A0A2V3ITC7 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITC7_9FLOR)

HSP 1 Score: 289 bits (739), Expect = 1.030e-96
Identity = 141/205 (68.78%), Postives = 173/205 (84.39%), Query Frame = 0
Query:    1 MTVGWSVVLMRLVQALATGSSVYNGVDLSLKIFQTGALLEVVHSLTRIIRAPVATTALQVASRLMLVWGIANPVAEVRSSISFTTMVLAWSLTEIPRYMYFTASSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTTYAALPYIRDSELFSFSMPNRFNFAFDYYIFSMILLVLYIPGLPHMYSHMLRQRRKYVVAPAAKVAKSE 205
            M VGWS VL+RL+QA++TGSSVY  V   LKIFQTGALLEV+HS+  +IRAPVATT LQV+SRLM++WG+  PV  VRS++SF  M++AWSLTEIPRY+YFT +S A HVP WLT++RY+TF+PLYPLGASSEWLT YAALP+IR S+LFS S+PN  NFAF+Y+ F +I+L +YIPGLPHMYSHMLRQR+KYV  P AK AK++
Sbjct:   14 MCVGWSAVLVRLLQAISTGSSVYEAVQAPLKIFQTGALLEVIHSVIGLIRAPVATTLLQVSSRLMILWGVTQPVEPVRSNLSFIAMIIAWSLTEIPRYLYFTVASVARHVPSWLTFIRYTTFIPLYPLGASSEWLTLYAALPHIRQSKLFSISLPNYLNFAFNYHYFCVIILTMYIPGLPHMYSHMLRQRKKYVTVPTAKPAKAD 218          
BLAST of Ggra8472.t1 vs. uniprot
Match: R7QF60 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QF60_CHOCR)

HSP 1 Score: 237 bits (604), Expect = 2.250e-76
Identity = 122/205 (59.51%), Postives = 160/205 (78.05%), Query Frame = 0
Query:    1 MTVGWSVVLMRLVQALATGSSVYNGVDLSLKIFQTGALLEVVHSLTRIIRAPVATTALQVASRLMLVWGIANPVAEVRSSISFTTMVLAWSLTEIPRYMYFTASSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTTYAALPYIRDSELFSFSMPNRFNFAFDYYIFSMILLVLYIPGLPHMYSHMLRQRRKYVVAPAAKVAKSE 205
            MT GWS+VL+RL++AL +   VY  V L L + QTGA+LEVVH+L+ ++RA  ATT LQV+SRLMLVWG+ + V EVR + + T+MVLAWSLTEIPRY+YF+ ++  + +P  LT+LRYSTF+PLYPLGA SE  T YAALPYI  +   S  MPNR NFAFDYY   +++LV Y+PGLP+M++HMLRQR+KYVV+PA K+ K++
Sbjct:    1 MTAGWSIVLLRLLRALISSEPVYPAVRLPLALSQTGAILEVVHALSGLVRASAATTLLQVSSRLMLVWGVLDLVPEVRLAPTVTSMVLAWSLTEIPRYLYFSVAAATTQIPPGLTWLRYSTFIPLYPLGAGSEAATLYAALPYIEAARPLSVYMPNRVNFAFDYYYMCVLVLVNYLPGLPYMFAHMLRQRKKYVVSPAEKLVKAQ 205          
BLAST of Ggra8472.t1 vs. uniprot
Match: A0A6I9YSS9 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=7 Tax=Colubroidea TaxID=34989 RepID=A0A6I9YSS9_9SAUR)

HSP 1 Score: 184 bits (467), Expect = 6.410e-55
Identity = 96/195 (49.23%), Postives = 139/195 (71.28%), Query Frame = 0
Query:    1 MTVGWSVVLMRLVQA-LATGS--SVYNGVDLSLKIFQTGALLEVVHSLTRIIRAPVATTALQVASRLMLVWGIANPVAEVRSSISFTTMVLAWSLTEIPRYMYFTASSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTTYAALPYIRDSELFSFSMPNRFNFAFDYYIFSMILLVLYIPGLPHMYSHMLRQRRK 192
            MT GW V+ + LV+A LATGS   +Y+ ++  LK FQTGALLE+VH    I+ + V  TA Q+ SR+ L WGIA+ V EV+S  S    V+AW++TEI RY ++T S   +H+PY++ + RY+ F+ LYP+G + E LT YAALP+++ S LFS S+PN++NF+FDYY F ++++++YIP  P +Y H+L QRRK
Sbjct:   51 MTAGWLVIAVGLVRAYLATGSYHKLYHSIEKPLKFFQTGALLEIVHCAVGIVPSSVVLTAFQIMSRVFLTWGIAHSVKEVQSEDSILLFVVAWTITEIVRYSFYTFS-LLNHLPYFIKWARYTLFIILYPMGVTGEMLTVYAALPFVKRSGLFSISLPNKYNFSFDYYTFLILVILVYIPIFPQLYFHLLHQRRK 244          
BLAST of Ggra8472.t1 vs. uniprot
Match: A0A2D4MG37 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (Fragment) n=2 Tax=Micrurus TaxID=8634 RepID=A0A2D4MG37_9SAUR)

HSP 1 Score: 184 bits (466), Expect = 1.080e-54
Identity = 96/195 (49.23%), Postives = 137/195 (70.26%), Query Frame = 0
Query:    1 MTVGWSVVLMRLVQA-LATGS--SVYNGVDLSLKIFQTGALLEVVHSLTRIIRAPVATTALQVASRLMLVWGIANPVAEVRSSISFTTMVLAWSLTEIPRYMYFTASSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTTYAALPYIRDSELFSFSMPNRFNFAFDYYIFSMILLVLYIPGLPHMYSHMLRQRRK 192
            MT GW V+ + LV+A LATGS   +Y+ ++  LK FQTGALLE+VH    I+ + V  TA Q+ SR+ L WGI + V EV+S  S    V+AW++TEI RY ++T S   +H+PY++ + RY+ F+ LYP+G + E LT YAALP+++ S LFS S+PN++NF+FDYY F +++++ YIP  P +Y HML QRRK
Sbjct:   57 MTAGWLVIAVGLVRAYLATGSYHKLYHSIEKPLKFFQTGALLEIVHCAVGIVPSSVVLTAFQIMSRVFLTWGITHSVKEVQSEDSILLFVVAWTITEIIRYSFYTFS-LLNHLPYFIKWARYTLFIILYPMGVTGEMLTMYAALPFVKRSGLFSISLPNKYNFSFDYYTFLILVMLAYIPSFPQLYFHMLHQRRK 250          
BLAST of Ggra8472.t1 vs. uniprot
Match: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 n=2 Tax=Crotalinae TaxID=8710 RepID=UPI00192F5CFE (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 n=2 Tax=Crotalinae TaxID=8710 RepID=UPI00192F5CFE)

HSP 1 Score: 181 bits (458), Expect = 5.460e-54
Identity = 95/191 (49.74%), Postives = 136/191 (71.20%), Query Frame = 0
Query:    5 WSVVLMRLVQA-LATGS--SVYNGVDLSLKIFQTGALLEVVHSLTRIIRAPVATTALQVASRLMLVWGIANPVAEVRSSISFTTMVLAWSLTEIPRYMYFTASSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTTYAALPYIRDSELFSFSMPNRFNFAFDYYIFSMILLVLYIPGLPHMYSHMLRQRRK 192
            W V+ + LV+A LATGS  ++Y+ ++  LK FQTGALLE+VH    I+ + V  TA Q+ SR+ L WGIA+ V EV+S  S    V+AW++TEI RY ++T S   +H+PY++ + RY+ F+ LYP+G + E LT YAALP+I+ S LFS S+PN++NF+FDYY F +++++ YIP  P +Y HML QRRK
Sbjct:   22 WLVIAVGLVRAYLATGSYHNLYHSIEKPLKFFQTGALLEIVHCAVGIVPSSVVLTAFQIMSRVFLTWGIAHSVKEVQSEDSILLFVVAWTITEIIRYSFYTFS-LLNHLPYFIKWARYTLFIILYPMGVTGEMLTMYAALPFIKRSGLFSISLPNKYNFSFDYYTFLILVMLTYIPSFPQLYFHMLHQRRK 211          
BLAST of Ggra8472.t1 vs. uniprot
Match: A0A1S3A421 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Laurasiatheria TaxID=314145 RepID=A0A1S3A421_ERIEU)

HSP 1 Score: 177 bits (450), Expect = 2.150e-52
Identity = 98/208 (47.12%), Postives = 142/208 (68.27%), Query Frame = 0
Query:    1 MTVGWSVVLMRLVQA-LATGS--SVYNGVDLSLKIFQTGALLEVVHSLTRIIRAPVATTALQVASRLMLVWGIANPVAEVRSSISFTTMVLAWSLTEIPRYMYFTASSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTTYAALPYIRDSELFSFSMPNRFNFAFDYYIFSMILLVLYIPGLPHMYSHMLRQRRKYVVAPAAKVAKSE 205
            MT GW V+ + LV+A LA GS  S+Y  ++  LK FQTGALLE+ H    I+ + V  T+ QV SR+ L+W + + V EV+S  S    V+AW++TEI RY ++T S   +H+PY + + RY+ F+ LYP+G S E LT YAALP++R + L+S S+PN++NF+FDYY F +++++ YIP  P +Y HML QRRK V++ A +  KSE
Sbjct:   48 MTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEIFHCAVGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFS-LLNHLPYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLILVMISYIPLFPQLYFHMLHQRRK-VLSHAEEHKKSE 253          
BLAST of Ggra8472.t1 vs. uniprot
Match: A0A3L8SMZ7 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=137 Tax=Archelosauria TaxID=1329799 RepID=A0A3L8SMZ7_CHLGU)

HSP 1 Score: 177 bits (449), Expect = 2.480e-52
Identity = 95/195 (48.72%), Postives = 134/195 (68.72%), Query Frame = 0
Query:    1 MTVGWSVVLMRLVQA-LATGS--SVYNGVDLSLKIFQTGALLEVVHSLTRIIRAPVATTALQVASRLMLVWGIANPVAEVRSSISFTTMVLAWSLTEIPRYMYFTASSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTTYAALPYIRDSELFSFSMPNRFNFAFDYYIFSMILLVLYIPGLPHMYSHMLRQRRK 192
            MT GW V+ + LV+A LA GS  S+Y  ++  LK FQTGALLE++H    I+ + V  TA QV SR+ L W + + V EV+S  S    V+AW++TEI RY ++T S   +H+PY + + RY+ F+ LYP+G S E LT YAALP++R S L+S S+PN++NF+FDYY F +++++ YIP  P +Y HML QRRK
Sbjct:   41 MTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCALGIVPSSVVLTAFQVMSRVFLTWAVTHSVKEVQSEDSVLLFVVAWTITEIIRYSFYTFS-LLNHLPYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQSGLYSISLPNKYNFSFDYYTFLILVMISYIPIFPQLYFHMLHQRRK 234          
BLAST of Ggra8472.t1 vs. uniprot
Match: F6U467 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=11 Tax=Galliformes TaxID=8976 RepID=F6U467_CHICK)

HSP 1 Score: 177 bits (449), Expect = 2.480e-52
Identity = 95/195 (48.72%), Postives = 135/195 (69.23%), Query Frame = 0
Query:    1 MTVGWSVVLMRLVQA-LATGS--SVYNGVDLSLKIFQTGALLEVVHSLTRIIRAPVATTALQVASRLMLVWGIANPVAEVRSSISFTTMVLAWSLTEIPRYMYFTASSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTTYAALPYIRDSELFSFSMPNRFNFAFDYYIFSMILLVLYIPGLPHMYSHMLRQRRK 192
            MT GW V+ + LV+A LA GS  S+Y  ++  LK FQTGALLE++H    I+ + V  TA QV SR+ L W + + V EV++  S    V+AW++TEI RY ++T S   +H+PY + + RY+ F+ LYP+G S E LT YAALP++R S L+S S+PN++NF+FDYY F +++++ YIP  P +Y HMLRQRRK
Sbjct:   41 MTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAFGIVPSSVVLTAFQVMSRVFLTWAVTHSVKEVQTEDSVLLFVVAWTITEIIRYSFYTFS-LLNHLPYLIKWARYTLFIILYPMGVSGELLTIYAALPFVRQSGLYSISLPNKYNFSFDYYTFLILVMISYIPLFPQLYFHMLRQRRK 234          
BLAST of Ggra8472.t1 vs. uniprot
Match: G1SEX0 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=8 Tax=Theria TaxID=32525 RepID=G1SEX0_RABIT)

HSP 1 Score: 177 bits (449), Expect = 3.140e-52
Identity = 93/200 (46.50%), Postives = 137/200 (68.50%), Query Frame = 0
Query:    1 MTVGWSVVLMRLVQA-LATGS--SVYNGVDLSLKIFQTGALLEVVHSLTRIIRAPVATTALQVASRLMLVWGIANPVAEVRSSISFTTMVLAWSLTEIPRYMYFTASSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTTYAALPYIRDSELFSFSMPNRFNFAFDYYIFSMILLVLYIPGLPHMYSHMLRQRRKYVVAP 197
            MT GW V+ + LV+A LA GS  S+Y  ++  LK FQTGALLE++H    I+ + V  T+ QV SR+ L+W + + V EV+S  S    V+AW++TEI RY ++T S   +H+PY + + RY+ F+ LYP+G S E LT YAALP++R + L+S S+PN++NF+FDYY F +++++ YIP  P +Y HM+ QRRK +  P
Sbjct:   49 MTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFS-LLNHLPYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLILIMISYIPIFPQLYFHMIHQRRKVLSHP 247          
BLAST of Ggra8472.t1 vs. uniprot
Match: A0A7K8ZQC6 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (Fragment) n=16 Tax=Sauria TaxID=32561 RepID=A0A7K8ZQC6_9PASS)

HSP 1 Score: 176 bits (446), Expect = 4.380e-52
Identity = 94/195 (48.21%), Postives = 134/195 (68.72%), Query Frame = 0
Query:    1 MTVGWSVVLMRLVQA-LATGS--SVYNGVDLSLKIFQTGALLEVVHSLTRIIRAPVATTALQVASRLMLVWGIANPVAEVRSSISFTTMVLAWSLTEIPRYMYFTASSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTTYAALPYIRDSELFSFSMPNRFNFAFDYYIFSMILLVLYIPGLPHMYSHMLRQRRK 192
            MT GW V+ + LV+A LA GS  S+Y  ++  LK FQTGALLE++H    I+ + V  TA QV SR+ L W + + V EV++  S    V+AW++TEI RY ++T S   +H+PY + + RY+ F+ LYP+G S E LT YAALP++R S L+S S+PN++NF+FDYY F +++++ YIP  P +Y HML QRRK
Sbjct:   25 MTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCALGIVPSSVVLTAFQVMSRVFLTWAVTHSVKEVQTEDSVLLFVVAWTITEIIRYSFYTFS-LLNHLPYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQSGLYSISLPNKYNFSFDYYTFLILVMISYIPIFPQLYFHMLHQRRK 218          
The following BLAST results are available for this feature:
BLAST of Ggra8472.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ITC71.030e-9668.78Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
R7QF602.250e-7659.51Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A6I9YSS96.410e-5549.23Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2D4MG371.080e-5449.23Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 n=2 Tax=Crotalinae TaxID=8710 RepID=UPI00192F5CFE5.460e-5449.74very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A1S3A4212.150e-5247.12Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A3L8SMZ72.480e-5248.72Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
F6U4672.480e-5248.72Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
G1SEX03.140e-5246.50Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A7K8ZQC64.380e-5248.21Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007482Protein-tyrosine phosphatase-like, PTPLAPFAMPF04387PTPLAcoord: 34..194
e-value: 8.4E-59
score: 197.8
IPR007482Protein-tyrosine phosphatase-like, PTPLAPANTHERPTHR11035PTPLA DOMAIN PROTEINcoord: 1..194
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 98..116
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 123..144
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 164..183
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 184..205
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..10
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 145..163
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..97
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 117..122
NoneNo IPR availableTMHMMTMhelixcoord: 161..183

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:803624..804241 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8472.t1Ggra8472.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 803624..804241 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8472.t1 ID=Ggra8472.t1|Name=Ggra8472.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=206bp
MTVGWSVVLMRLVQALATGSSVYNGVDLSLKIFQTGALLEVVHSLTRIIR
APVATTALQVASRLMLVWGIANPVAEVRSSISFTTMVLAWSLTEIPRYMY
FTASSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTTYAALPYIRDSELF
SFSMPNRFNFAFDYYIFSMILLVLYIPGLPHMYSHMLRQRRKYVVAPAAK
VAKSE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007482Tyr_Pase-like_PTPLA