Ggra8472.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8472.t1
Unique NameGgra8472.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length206
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:803624..804241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog181119.XP_005519703.1
Preferred namePTPLB
PFAMsPTPLA
Max annot lvl33208|Metazoa
KEGG rclassRC00770,RC01095
KEGG koko:K10703
KEGG ReactionR07760,R10827
KEGG Pathwayko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG ModuleM00415
GOsGO:0000038,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006643,GO:0006665,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0018812,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019899,GO:0030148,GO:0030176,GO:0030497,GO:0031224,GO:0031227,GO:0031984,GO:0032787,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035336,GO:0035337,GO:0035338,GO:0035383,GO:0035384,GO:0042175,GO:0042761,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046390,GO:0046394,GO:0046467,GO:0046483,GO:0046949,GO:0051186,GO:0051188,GO:0055086,GO:0071616,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0080023,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576
Evalue5.37e-54
EggNOG OGsCOG5198@1|root,KOG3187@2759|Eukaryota,38E6D@33154|Opisthokonta,3BAFA@33208|Metazoa,3CZWF@33213|Bilateria,4823Z@7711|Chordata,48ZNB@7742|Vertebrata,4GITC@8782|Aves
EC4.2.1.134
DescriptionCatalyzes the third of the four reactions of the long- chain fatty acids elongation cycle. This endoplasmic reticulum- bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membrane lipids and lipid mediators
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8472Ggra8472Gracilaria gracilis GNS1m malegenetig00000041_pilon 803624..804241 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8472.t1.stop1Ggra8472.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 803624..803626 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8472.t1.CDS1Ggra8472.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 803624..804241 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8472.t1.exon1Ggra8472.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 803624..804241 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8472.t1.start1Ggra8472.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 804239..804241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8472.t1Ggra8472.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 803624..804241 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8472.t1 ID=Ggra8472.t1|Name=Ggra8472.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=206bp
MTVGWSVVLMRLVQALATGSSVYNGVDLSLKIFQTGALLEVVHSLTRIIR
APVATTALQVASRLMLVWGIANPVAEVRSSISFTTMVLAWSLTEIPRYMY
FTASSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTTYAALPYIRDSELF
SFSMPNRFNFAFDYYIFSMILLVLYIPGLPHMYSHMLRQRRKYVVAPAAK
VAKSE*
back to top

spliced messenger RNA

>Ggra8472.t1 ID=Ggra8472.t1|Name=Ggra8472.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00000041_pilon:803624..804241- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTAGGCTGGTCTGTAGTGCTCATGCGTCTAGTCCAGGCGCTTGC
CACAGGCTCGTCCGTATATAATGGAGTCGATCTCTCACTCAAGATTTTTC
AGACTGGTGCACTTCTAGAGGTCGTTCACAGTCTCACGCGTATAATTCGC
GCTCCGGTGGCGACCACGGCGCTCCAAGTTGCTTCGCGCCTCATGCTGGT
CTGGGGTATAGCTAATCCTGTCGCAGAGGTGCGATCTAGTATCTCGTTCA
CCACAATGGTGCTTGCATGGTCTCTCACCGAGATCCCGCGATACATGTAC
TTCACCGCGTCGTCTTTTGCTTCTCATGTTCCATACTGGCTTACATATCT
CAGGTATTCAACTTTCCTTCCGCTCTACCCGCTTGGCGCGTCGAGCGAAT
GGTTGACAACATACGCCGCGCTTCCATATATCCGCGACTCGGAACTGTTC
TCATTTTCGATGCCAAACCGCTTTAACTTTGCCTTTGACTACTACATATT
TTCTATGATCCTTCTCGTCTTGTACATACCAGGGCTACCTCACATGTACT
CCCACATGCTTCGACAACGCAGAAAGTATGTCGTCGCTCCGGCAGCTAAA
GTAGCCAAATCTGAATGA
back to top

protein sequence of Ggra8472.t1

>Ggra8472.t1 ID=Ggra8472.t1|Name=Ggra8472.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=206bp
MTVGWSVVLMRLVQALATGSSVYNGVDLSLKIFQTGALLEVVHSLTRIIR
APVATTALQVASRLMLVWGIANPVAEVRSSISFTTMVLAWSLTEIPRYMY
FTASSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTTYAALPYIRDSELF
SFSMPNRFNFAFDYYIFSMILLVLYIPGLPHMYSHMLRQRRKYVVAPAAK
VAKSE*
back to top

mRNA from alignment at tig00000041_pilon:803624..804241-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8472.t1 ID=Ggra8472.t1|Name=Ggra8472.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00000041_pilon:803624..804241- (Gracilaria gracilis GNS1m male)
ATGACCGTAGGCTGGTCTGTAGTGCTCATGCGTCTAGTCCAGGCGCTTGC
CACAGGCTCGTCCGTATATAATGGAGTCGATCTCTCACTCAAGATTTTTC
AGACTGGTGCACTTCTAGAGGTCGTTCACAGTCTCACGCGTATAATTCGC
GCTCCGGTGGCGACCACGGCGCTCCAAGTTGCTTCGCGCCTCATGCTGGT
CTGGGGTATAGCTAATCCTGTCGCAGAGGTGCGATCTAGTATCTCGTTCA
CCACAATGGTGCTTGCATGGTCTCTCACCGAGATCCCGCGATACATGTAC
TTCACCGCGTCGTCTTTTGCTTCTCATGTTCCATACTGGCTTACATATCT
CAGGTATTCAACTTTCCTTCCGCTCTACCCGCTTGGCGCGTCGAGCGAAT
GGTTGACAACATACGCCGCGCTTCCATATATCCGCGACTCGGAACTGTTC
TCATTTTCGATGCCAAACCGCTTTAACTTTGCCTTTGACTACTACATATT
TTCTATGATCCTTCTCGTCTTGTACATACCAGGGCTACCTCACATGTACT
CCCACATGCTTCGACAACGCAGAAAGTATGTCGTCGCTCCGGCAGCTAAA
GTAGCCAAATCTGAATGA
back to top

Coding sequence (CDS) from alignment at tig00000041_pilon:803624..804241-

>Ggra8472.t1 ID=Ggra8472.t1|Name=Ggra8472.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=618bp|location=Sequence derived from alignment at tig00000041_pilon:803624..804241- (Gracilaria gracilis GNS1m male)
ATGACCGTAGGCTGGTCTGTAGTGCTCATGCGTCTAGTCCAGGCGCTTGC
CACAGGCTCGTCCGTATATAATGGAGTCGATCTCTCACTCAAGATTTTTC
AGACTGGTGCACTTCTAGAGGTCGTTCACAGTCTCACGCGTATAATTCGC
GCTCCGGTGGCGACCACGGCGCTCCAAGTTGCTTCGCGCCTCATGCTGGT
CTGGGGTATAGCTAATCCTGTCGCAGAGGTGCGATCTAGTATCTCGTTCA
CCACAATGGTGCTTGCATGGTCTCTCACCGAGATCCCGCGATACATGTAC
TTCACCGCGTCGTCTTTTGCTTCTCATGTTCCATACTGGCTTACATATCT
CAGGTATTCAACTTTCCTTCCGCTCTACCCGCTTGGCGCGTCGAGCGAAT
GGTTGACAACATACGCCGCGCTTCCATATATCCGCGACTCGGAACTGTTC
TCATTTTCGATGCCAAACCGCTTTAACTTTGCCTTTGACTACTACATATT
TTCTATGATCCTTCTCGTCTTGTACATACCAGGGCTACCTCACATGTACT
CCCACATGCTTCGACAACGCAGAAAGTATGTCGTCGCTCCGGCAGCTAAA
GTAGCCAAATCTGAATGA
back to top