Ggra4004.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4004.t1
Unique Name	Ggra4004.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	333

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:322248..323246 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4006.Lus10017666
PFAMs	DUF455
Max annot lvl	35493\|Streptophyta
Evalue	1.09e-60
EggNOG OGs	COG2833@1\|root,2QU9I@2759\|Eukaryota,37JBY@33090\|Viridiplantae,3GE8S@35493\|Streptophyta,4JHXN@91835\|fabids
Description	Protein of unknown function (DUF455)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4004	Ggra4004	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 322248..323246 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4004.t1.start1	Ggra4004.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 322248..322250 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4004.t1.CDS1	Ggra4004.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 322248..323246 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4004.t1.exon1	Ggra4004.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 322248..323246 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4004.t1.stop1	Ggra4004.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 323244..323246 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4004.t1	Ggra4004.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 322248..323246 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:322248..323246+
coding sequence from alignment at tig00000908_pilon:322248..323246+

mRNA sequence

>Ggra4004.t1 ID=Ggra4004.t1|Name=Ggra4004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=333bp
MRLIAHPYEAHTFRMRDRNEATNTRKSSSAFAVRLSMQVMSQVSAPTTVS
SFASRVLTAGAPLDKVRLTQAAVSFWETVRKCGPSFTPPDRPSRPKLPQI
IPPSEMPSVKESKAPPNVYHLHSLAHVELNAIDLCFDTMLRFETDIPLKD
REEWFEDWLSIASDEARHFSFLHDRLISLGSFYGALPAHDIIWKSADVSR
GCLHERLALGQLVAEAKGLDAGPKLVQRLVGGGDNESAAIVRQIADEEIR
HVKLGVKWFLKECDRLQLDSIKTFHEIALRLGNPGAFTKPFNEERRREAG
MTPEWYLPVAEEVERQRRARAAAKRGNVFKQS*

spliced messenger RNA

>Ggra4004.t1 ID=Ggra4004.t1|Name=Ggra4004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000908_pilon:322248..323246+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACTTATCGCTCACCCTTACGAAGCACACACCTTTAGAATGCGCGA
TCGCAACGAGGCAACAAATACCAGAAAGTCATCTTCAGCATTCGCGGTCC
GTCTATCCATGCAAGTGATGTCACAAGTATCCGCACCCACAACAGTTTCA
TCGTTTGCATCTCGCGTCCTAACTGCTGGAGCTCCGTTGGACAAAGTTCG
CCTAACTCAAGCAGCTGTGAGCTTTTGGGAAACAGTTCGAAAATGCGGGC
CCAGCTTTACTCCCCCAGACCGTCCTTCCCGACCGAAGCTTCCGCAGATT
ATCCCTCCCTCTGAGATGCCCAGTGTGAAGGAATCGAAAGCGCCTCCTAA
TGTGTACCATCTGCATTCACTTGCTCACGTCGAACTAAACGCCATTGATC
TATGTTTCGACACAATGCTTCGATTTGAAACTGATATCCCGTTAAAGGAC
CGAGAAGAGTGGTTTGAAGACTGGCTTTCGATAGCATCGGATGAGGCACG
TCATTTCTCTTTTTTGCATGATCGGCTCATATCTTTAGGCTCCTTCTATG
GAGCATTGCCTGCCCATGATATCATCTGGAAGTCGGCTGATGTATCACGA
GGTTGCCTTCACGAAAGGCTTGCTCTCGGACAGTTGGTGGCAGAGGCAAA
AGGACTGGATGCAGGCCCAAAACTAGTACAACGGCTGGTTGGTGGAGGTG
ATAATGAATCTGCTGCGATTGTACGCCAGATTGCTGATGAAGAGATTCGG
CACGTCAAGCTGGGTGTGAAGTGGTTCTTGAAAGAATGCGACCGCCTACA
ACTTGATTCGATCAAGACTTTCCATGAAATCGCACTTAGGTTAGGAAATC
CTGGCGCATTTACAAAGCCGTTCAACGAGGAACGGAGAAGAGAGGCGGGC
ATGACACCAGAATGGTATCTGCCTGTAGCTGAAGAGGTTGAACGACAACG
GAGAGCGAGAGCAGCAGCAAAGAGAGGAAACGTGTTCAAACAATCATGA

protein sequence of Ggra4004.t1

>Ggra4004.t1 ID=Ggra4004.t1|Name=Ggra4004.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=333bp
MRLIAHPYEAHTFRMRDRNEATNTRKSSSAFAVRLSMQVMSQVSAPTTVS
SFASRVLTAGAPLDKVRLTQAAVSFWETVRKCGPSFTPPDRPSRPKLPQI
IPPSEMPSVKESKAPPNVYHLHSLAHVELNAIDLCFDTMLRFETDIPLKD
REEWFEDWLSIASDEARHFSFLHDRLISLGSFYGALPAHDIIWKSADVSR
GCLHERLALGQLVAEAKGLDAGPKLVQRLVGGGDNESAAIVRQIADEEIR
HVKLGVKWFLKECDRLQLDSIKTFHEIALRLGNPGAFTKPFNEERRREAG
MTPEWYLPVAEEVERQRRARAAAKRGNVFKQS*

mRNA from alignment at tig00000908_pilon:322248..323246+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4004.t1 ID=Ggra4004.t1|Name=Ggra4004.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000908_pilon:322248..323246+ (Gracilaria gracilis GNS1m male)
ATGCGACTTATCGCTCACCCTTACGAAGCACACACCTTTAGAATGCGCGA
TCGCAACGAGGCAACAAATACCAGAAAGTCATCTTCAGCATTCGCGGTCC
GTCTATCCATGCAAGTGATGTCACAAGTATCCGCACCCACAACAGTTTCA
TCGTTTGCATCTCGCGTCCTAACTGCTGGAGCTCCGTTGGACAAAGTTCG
CCTAACTCAAGCAGCTGTGAGCTTTTGGGAAACAGTTCGAAAATGCGGGC
CCAGCTTTACTCCCCCAGACCGTCCTTCCCGACCGAAGCTTCCGCAGATT
ATCCCTCCCTCTGAGATGCCCAGTGTGAAGGAATCGAAAGCGCCTCCTAA
TGTGTACCATCTGCATTCACTTGCTCACGTCGAACTAAACGCCATTGATC
TATGTTTCGACACAATGCTTCGATTTGAAACTGATATCCCGTTAAAGGAC
CGAGAAGAGTGGTTTGAAGACTGGCTTTCGATAGCATCGGATGAGGCACG
TCATTTCTCTTTTTTGCATGATCGGCTCATATCTTTAGGCTCCTTCTATG
GAGCATTGCCTGCCCATGATATCATCTGGAAGTCGGCTGATGTATCACGA
GGTTGCCTTCACGAAAGGCTTGCTCTCGGACAGTTGGTGGCAGAGGCAAA
AGGACTGGATGCAGGCCCAAAACTAGTACAACGGCTGGTTGGTGGAGGTG
ATAATGAATCTGCTGCGATTGTACGCCAGATTGCTGATGAAGAGATTCGG
CACGTCAAGCTGGGTGTGAAGTGGTTCTTGAAAGAATGCGACCGCCTACA
ACTTGATTCGATCAAGACTTTCCATGAAATCGCACTTAGGTTAGGAAATC
CTGGCGCATTTACAAAGCCGTTCAACGAGGAACGGAGAAGAGAGGCGGGC
ATGACACCAGAATGGTATCTGCCTGTAGCTGAAGAGGTTGAACGACAACG
GAGAGCGAGAGCAGCAGCAAAGAGAGGAAACGTGTTCAAACAATCATGA

Coding sequence (CDS) from alignment at tig00000908_pilon:322248..323246+

>Ggra4004.t1 ID=Ggra4004.t1|Name=Ggra4004.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=999bp|location=Sequence derived from alignment at tig00000908_pilon:322248..323246+ (Gracilaria gracilis GNS1m male)
ATGCGACTTATCGCTCACCCTTACGAAGCACACACCTTTAGAATGCGCGA
TCGCAACGAGGCAACAAATACCAGAAAGTCATCTTCAGCATTCGCGGTCC
GTCTATCCATGCAAGTGATGTCACAAGTATCCGCACCCACAACAGTTTCA
TCGTTTGCATCTCGCGTCCTAACTGCTGGAGCTCCGTTGGACAAAGTTCG
CCTAACTCAAGCAGCTGTGAGCTTTTGGGAAACAGTTCGAAAATGCGGGC
CCAGCTTTACTCCCCCAGACCGTCCTTCCCGACCGAAGCTTCCGCAGATT
ATCCCTCCCTCTGAGATGCCCAGTGTGAAGGAATCGAAAGCGCCTCCTAA
TGTGTACCATCTGCATTCACTTGCTCACGTCGAACTAAACGCCATTGATC
TATGTTTCGACACAATGCTTCGATTTGAAACTGATATCCCGTTAAAGGAC
CGAGAAGAGTGGTTTGAAGACTGGCTTTCGATAGCATCGGATGAGGCACG
TCATTTCTCTTTTTTGCATGATCGGCTCATATCTTTAGGCTCCTTCTATG
GAGCATTGCCTGCCCATGATATCATCTGGAAGTCGGCTGATGTATCACGA
GGTTGCCTTCACGAAAGGCTTGCTCTCGGACAGTTGGTGGCAGAGGCAAA
AGGACTGGATGCAGGCCCAAAACTAGTACAACGGCTGGTTGGTGGAGGTG
ATAATGAATCTGCTGCGATTGTACGCCAGATTGCTGATGAAGAGATTCGG
CACGTCAAGCTGGGTGTGAAGTGGTTCTTGAAAGAATGCGACCGCCTACA
ACTTGATTCGATCAAGACTTTCCATGAAATCGCACTTAGGTTAGGAAATC
CTGGCGCATTTACAAAGCCGTTCAACGAGGAACGGAGAAGAGAGGCGGGC
ATGACACCAGAATGGTATCTGCCTGTAGCTGAAGAGGTTGAACGACAACG
GAGAGCGAGAGCAGCAGCAAAGAGAGGAAACGTGTTCAAACAATCATGA