Ggra4028.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4028.t1
Unique NameGgra4028.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length236
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:398590..399297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog98439.AJLL01000049_gene2812
Max annot lvl1117|Cyanobacteria
Evalue8.69e-22
EggNOG OGs2A2I3@1|root,30QVM@2|Bacteria,1G602@1117|Cyanobacteria,1JIJC@1189|Stigonemataceae
DescriptionAlternative locus ID
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4028Ggra4028Gracilaria gracilis GNS1m malegenetig00000908_pilon 398590..399297 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4028.t1.start1Ggra4028.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 398590..398592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4028.t1.CDS1Ggra4028.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 398590..399297 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4028.t1.exon1Ggra4028.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 398590..399297 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4028.t1.stop1Ggra4028.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 399295..399297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4028.t1Ggra4028.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 398590..399297 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4028.t1 ID=Ggra4028.t1|Name=Ggra4028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=236bp
MNDAFISPAHNLRLAKFRRNTLSATTKCPVRCEQTKSPNRAETDAVTAAA
ATFILQRAAKAYTTGGMKPAPVAVAQAMRQLEKAQKRSKATIDGENILGQ
WRLVFIANPKRKPAWLRFLYFPIRAHQTFTPPDEGGEFDNAVHFGVGKFR
VTGPFRWISGRNRMEFTVNRFQFELGPLKWKKDERGKEKVAFEDMKVRDL
PFFTFFLLRENLAAARGRTGGLALYAKVPQGQEIY*
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spliced messenger RNA

>Ggra4028.t1 ID=Ggra4028.t1|Name=Ggra4028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00000908_pilon:398590..399297+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGATGCCTTCATATCACCAGCACATAACCTGCGACTGGCAAAGTT
CCGGCGCAACACGCTCTCCGCAACAACAAAATGCCCAGTGCGATGCGAAC
AAACAAAATCACCAAACAGAGCAGAAACCGACGCCGTAACCGCTGCCGCT
GCCACCTTCATTCTTCAACGCGCCGCAAAGGCATACACAACAGGCGGCAT
GAAACCAGCGCCAGTCGCCGTCGCACAGGCCATGCGACAGCTTGAAAAGG
CACAAAAGCGAAGCAAGGCAACCATCGATGGCGAAAACATCTTGGGTCAA
TGGAGATTAGTGTTTATTGCCAACCCAAAACGCAAACCTGCTTGGTTGCG
CTTCTTATACTTCCCTATCCGCGCGCATCAAACGTTCACGCCGCCGGACG
AAGGCGGCGAGTTTGACAATGCTGTACACTTTGGTGTTGGTAAGTTTCGG
GTTACTGGGCCGTTTCGATGGATTTCTGGGCGGAATAGAATGGAGTTCAC
CGTGAACCGATTCCAGTTTGAGCTAGGGCCTTTGAAATGGAAAAAGGATG
AACGTGGTAAGGAAAAGGTTGCGTTTGAAGACATGAAAGTGCGCGATCTT
CCCTTCTTTACATTCTTTCTTCTTAGAGAGAACTTAGCGGCGGCTAGAGG
ACGAACTGGTGGTTTAGCTTTGTATGCAAAGGTACCCCAAGGTCAAGAAA
TATACTAA
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protein sequence of Ggra4028.t1

>Ggra4028.t1 ID=Ggra4028.t1|Name=Ggra4028.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=236bp
MNDAFISPAHNLRLAKFRRNTLSATTKCPVRCEQTKSPNRAETDAVTAAA
ATFILQRAAKAYTTGGMKPAPVAVAQAMRQLEKAQKRSKATIDGENILGQ
WRLVFIANPKRKPAWLRFLYFPIRAHQTFTPPDEGGEFDNAVHFGVGKFR
VTGPFRWISGRNRMEFTVNRFQFELGPLKWKKDERGKEKVAFEDMKVRDL
PFFTFFLLRENLAAARGRTGGLALYAKVPQGQEIY*
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mRNA from alignment at tig00000908_pilon:398590..399297+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4028.t1 ID=Ggra4028.t1|Name=Ggra4028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00000908_pilon:398590..399297+ (Gracilaria gracilis GNS1m male)
ATGAACGATGCCTTCATATCACCAGCACATAACCTGCGACTGGCAAAGTT
CCGGCGCAACACGCTCTCCGCAACAACAAAATGCCCAGTGCGATGCGAAC
AAACAAAATCACCAAACAGAGCAGAAACCGACGCCGTAACCGCTGCCGCT
GCCACCTTCATTCTTCAACGCGCCGCAAAGGCATACACAACAGGCGGCAT
GAAACCAGCGCCAGTCGCCGTCGCACAGGCCATGCGACAGCTTGAAAAGG
CACAAAAGCGAAGCAAGGCAACCATCGATGGCGAAAACATCTTGGGTCAA
TGGAGATTAGTGTTTATTGCCAACCCAAAACGCAAACCTGCTTGGTTGCG
CTTCTTATACTTCCCTATCCGCGCGCATCAAACGTTCACGCCGCCGGACG
AAGGCGGCGAGTTTGACAATGCTGTACACTTTGGTGTTGGTAAGTTTCGG
GTTACTGGGCCGTTTCGATGGATTTCTGGGCGGAATAGAATGGAGTTCAC
CGTGAACCGATTCCAGTTTGAGCTAGGGCCTTTGAAATGGAAAAAGGATG
AACGTGGTAAGGAAAAGGTTGCGTTTGAAGACATGAAAGTGCGCGATCTT
CCCTTCTTTACATTCTTTCTTCTTAGAGAGAACTTAGCGGCGGCTAGAGG
ACGAACTGGTGGTTTAGCTTTGTATGCAAAGGTACCCCAAGGTCAAGAAA
TATACTAA
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Coding sequence (CDS) from alignment at tig00000908_pilon:398590..399297+

>Ggra4028.t1 ID=Ggra4028.t1|Name=Ggra4028.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=708bp|location=Sequence derived from alignment at tig00000908_pilon:398590..399297+ (Gracilaria gracilis GNS1m male)
ATGAACGATGCCTTCATATCACCAGCACATAACCTGCGACTGGCAAAGTT
CCGGCGCAACACGCTCTCCGCAACAACAAAATGCCCAGTGCGATGCGAAC
AAACAAAATCACCAAACAGAGCAGAAACCGACGCCGTAACCGCTGCCGCT
GCCACCTTCATTCTTCAACGCGCCGCAAAGGCATACACAACAGGCGGCAT
GAAACCAGCGCCAGTCGCCGTCGCACAGGCCATGCGACAGCTTGAAAAGG
CACAAAAGCGAAGCAAGGCAACCATCGATGGCGAAAACATCTTGGGTCAA
TGGAGATTAGTGTTTATTGCCAACCCAAAACGCAAACCTGCTTGGTTGCG
CTTCTTATACTTCCCTATCCGCGCGCATCAAACGTTCACGCCGCCGGACG
AAGGCGGCGAGTTTGACAATGCTGTACACTTTGGTGTTGGTAAGTTTCGG
GTTACTGGGCCGTTTCGATGGATTTCTGGGCGGAATAGAATGGAGTTCAC
CGTGAACCGATTCCAGTTTGAGCTAGGGCCTTTGAAATGGAAAAAGGATG
AACGTGGTAAGGAAAAGGTTGCGTTTGAAGACATGAAAGTGCGCGATCTT
CCCTTCTTTACATTCTTTCTTCTTAGAGAGAACTTAGCGGCGGCTAGAGG
ACGAACTGGTGGTTTAGCTTTGTATGCAAAGGTACCCCAAGGTCAAGAAA
TATACTAA
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