Ggra3980.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3980.t1
Unique NameGgra3980.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length279
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:275646..276482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT175CT
PFAMsELO
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00039,RC02728,RC02888,RC02997
KEGG koko:K10246
KEGG ReactionR07758,R07762,R09419,R10825
KEGG Pathwayko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG ModuleM00415
GOsGO:0000038,GO:0003674,GO:0003824,GO:0004312,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006665,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009922,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019367,GO:0019368,GO:0019752,GO:0030148,GO:0030176,GO:0030497,GO:0031224,GO:0031227,GO:0031984,GO:0032787,GO:0034625,GO:0034626,GO:0042175,GO:0042761,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046467,GO:0071704,GO:0072330,GO:0098827,GO:1901564,GO:1901566,GO:1901576
Evalue7.15e-89
EggNOG OGsKOG3071@1|root,KOG3071@2759|Eukaryota
EC2.3.1.199
Descriptionfatty acid elongation, saturated fatty acid
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3980Ggra3980Gracilaria gracilis GNS1m malegenetig00000908_pilon 275646..276482 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3980.t1.start1Ggra3980.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 275646..275648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3980.t1.CDS1Ggra3980.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 275646..276482 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3980.t1.exon1Ggra3980.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 275646..276482 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3980.t1.stop1Ggra3980.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 276480..276482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3980.t1Ggra3980.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 275646..276482 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3980.t1 ID=Ggra3980.t1|Name=Ggra3980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=279bp
MHLPTSFEWRSSPFSSVVYPVVAIVCYLSLIFSLQKFMRSRPPVPLKLPT
MIHNVFLCVLSVAMGMGVFSEVLKTWFTSSNATREVLCDLSGHAMRGRMG
WWMYVFYLSKFYELLDTVIMVLKKRPLNFLHVYHHCVVLPLFYVYMSTNM
VLQWILVVANSSVHVAMYYYYAMAAMGVKVWWKKYITQAQIVQFIIDLTA
TWPYPFLYFSATGCSGSMRGWFFGQAVGLSFFKLFSDFYVRSYNKGKLKN
IAEHTQSDATPIDSSKDVDAQQKAKKNC*
back to top

spliced messenger RNA

>Ggra3980.t1 ID=Ggra3980.t1|Name=Ggra3980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000908_pilon:275646..276482+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTTACCCACCAGTTTTGAGTGGAGGAGCTCACCGTTCTCATCCGT
CGTGTATCCGGTTGTGGCTATTGTGTGTTATCTGTCGCTTATTTTCTCGT
TGCAGAAGTTTATGAGATCGAGGCCGCCTGTGCCGCTCAAGCTTCCGACT
ATGATTCACAATGTGTTCTTGTGCGTGCTGTCTGTCGCCATGGGTATGGG
CGTGTTTTCGGAGGTTTTGAAGACCTGGTTCACCTCTTCGAACGCTACCA
GGGAGGTTTTGTGCGACCTGTCTGGACACGCTATGCGTGGTAGGATGGGC
TGGTGGATGTATGTCTTCTACTTGTCCAAGTTTTATGAGTTACTTGATAC
CGTCATCATGGTTTTGAAAAAACGACCGCTCAATTTTCTTCATGTTTATC
ATCATTGTGTTGTTTTGCCCCTGTTTTATGTTTATATGTCCACCAATATG
GTGTTGCAGTGGATTCTTGTCGTGGCAAACTCCTCCGTTCATGTTGCCAT
GTACTACTACTATGCCATGGCTGCCATGGGCGTCAAGGTGTGGTGGAAGA
AGTACATCACTCAAGCACAGATTGTACAGTTCATAATCGATCTCACTGCA
ACATGGCCGTATCCGTTCCTCTACTTTTCTGCCACAGGCTGTTCGGGCAG
TATGAGAGGCTGGTTCTTTGGCCAGGCTGTTGGCTTGAGTTTCTTCAAGC
TCTTCAGTGACTTCTACGTCAGGAGTTACAACAAGGGTAAGTTGAAGAAC
ATAGCAGAGCACACACAATCGGACGCCACGCCGATCGATTCGTCCAAGGA
TGTTGATGCTCAACAAAAAGCGAAGAAGAACTGTTGA
back to top

protein sequence of Ggra3980.t1

>Ggra3980.t1 ID=Ggra3980.t1|Name=Ggra3980.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=279bp
MHLPTSFEWRSSPFSSVVYPVVAIVCYLSLIFSLQKFMRSRPPVPLKLPT
MIHNVFLCVLSVAMGMGVFSEVLKTWFTSSNATREVLCDLSGHAMRGRMG
WWMYVFYLSKFYELLDTVIMVLKKRPLNFLHVYHHCVVLPLFYVYMSTNM
VLQWILVVANSSVHVAMYYYYAMAAMGVKVWWKKYITQAQIVQFIIDLTA
TWPYPFLYFSATGCSGSMRGWFFGQAVGLSFFKLFSDFYVRSYNKGKLKN
IAEHTQSDATPIDSSKDVDAQQKAKKNC*
back to top

mRNA from alignment at tig00000908_pilon:275646..276482+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3980.t1 ID=Ggra3980.t1|Name=Ggra3980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000908_pilon:275646..276482+ (Gracilaria gracilis GNS1m male)
ATGCATTTACCCACCAGTTTTGAGTGGAGGAGCTCACCGTTCTCATCCGT
CGTGTATCCGGTTGTGGCTATTGTGTGTTATCTGTCGCTTATTTTCTCGT
TGCAGAAGTTTATGAGATCGAGGCCGCCTGTGCCGCTCAAGCTTCCGACT
ATGATTCACAATGTGTTCTTGTGCGTGCTGTCTGTCGCCATGGGTATGGG
CGTGTTTTCGGAGGTTTTGAAGACCTGGTTCACCTCTTCGAACGCTACCA
GGGAGGTTTTGTGCGACCTGTCTGGACACGCTATGCGTGGTAGGATGGGC
TGGTGGATGTATGTCTTCTACTTGTCCAAGTTTTATGAGTTACTTGATAC
CGTCATCATGGTTTTGAAAAAACGACCGCTCAATTTTCTTCATGTTTATC
ATCATTGTGTTGTTTTGCCCCTGTTTTATGTTTATATGTCCACCAATATG
GTGTTGCAGTGGATTCTTGTCGTGGCAAACTCCTCCGTTCATGTTGCCAT
GTACTACTACTATGCCATGGCTGCCATGGGCGTCAAGGTGTGGTGGAAGA
AGTACATCACTCAAGCACAGATTGTACAGTTCATAATCGATCTCACTGCA
ACATGGCCGTATCCGTTCCTCTACTTTTCTGCCACAGGCTGTTCGGGCAG
TATGAGAGGCTGGTTCTTTGGCCAGGCTGTTGGCTTGAGTTTCTTCAAGC
TCTTCAGTGACTTCTACGTCAGGAGTTACAACAAGGGTAAGTTGAAGAAC
ATAGCAGAGCACACACAATCGGACGCCACGCCGATCGATTCGTCCAAGGA
TGTTGATGCTCAACAAAAAGCGAAGAAGAACTGTTGA
back to top

Coding sequence (CDS) from alignment at tig00000908_pilon:275646..276482+

>Ggra3980.t1 ID=Ggra3980.t1|Name=Ggra3980.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00000908_pilon:275646..276482+ (Gracilaria gracilis GNS1m male)
ATGCATTTACCCACCAGTTTTGAGTGGAGGAGCTCACCGTTCTCATCCGT
CGTGTATCCGGTTGTGGCTATTGTGTGTTATCTGTCGCTTATTTTCTCGT
TGCAGAAGTTTATGAGATCGAGGCCGCCTGTGCCGCTCAAGCTTCCGACT
ATGATTCACAATGTGTTCTTGTGCGTGCTGTCTGTCGCCATGGGTATGGG
CGTGTTTTCGGAGGTTTTGAAGACCTGGTTCACCTCTTCGAACGCTACCA
GGGAGGTTTTGTGCGACCTGTCTGGACACGCTATGCGTGGTAGGATGGGC
TGGTGGATGTATGTCTTCTACTTGTCCAAGTTTTATGAGTTACTTGATAC
CGTCATCATGGTTTTGAAAAAACGACCGCTCAATTTTCTTCATGTTTATC
ATCATTGTGTTGTTTTGCCCCTGTTTTATGTTTATATGTCCACCAATATG
GTGTTGCAGTGGATTCTTGTCGTGGCAAACTCCTCCGTTCATGTTGCCAT
GTACTACTACTATGCCATGGCTGCCATGGGCGTCAAGGTGTGGTGGAAGA
AGTACATCACTCAAGCACAGATTGTACAGTTCATAATCGATCTCACTGCA
ACATGGCCGTATCCGTTCCTCTACTTTTCTGCCACAGGCTGTTCGGGCAG
TATGAGAGGCTGGTTCTTTGGCCAGGCTGTTGGCTTGAGTTTCTTCAAGC
TCTTCAGTGACTTCTACGTCAGGAGTTACAACAAGGGTAAGTTGAAGAAC
ATAGCAGAGCACACACAATCGGACGCCACGCCGATCGATTCGTCCAAGGA
TGTTGATGCTCAACAAAAAGCGAAGAAGAACTGTTGA
back to top