Ggra3897.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3897.t1
Unique NameGgra3897.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length484
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:44415..45866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog99598.Cal7507_5435
PFAMsGlyco_transf_28,UDPGT
Max annot lvl1117|Cyanobacteria
KEGG koko:K05841
Evalue4.59e-28
EggNOG OGsCOG1819@1|root,COG1819@2|Bacteria,1G036@1117|Cyanobacteria,1HR6B@1161|Nostocales
EC2.4.1.173
DescriptionPFAM UDP-glucoronosyl and UDP-glucosyl transferase
COG categoryCG
CAZyGT1
BRITEko00000,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3897Ggra3897Gracilaria gracilis GNS1m malegenetig00000908_pilon 44415..45866 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3897.t1.stop1Ggra3897.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 44415..44417 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3897.t1.CDS1Ggra3897.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 44415..45866 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3897.t1.exon1Ggra3897.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 44415..45866 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3897.t1.start1Ggra3897.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 45864..45866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3897.t1Ggra3897.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 44415..45866 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3897.t1 ID=Ggra3897.t1|Name=Ggra3897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=484bp
MTSAFLICVGSRGDTEPLTALAVALVNDPRFDKVHFCVQPQYRGLIPNDD
RIIIHEVPLSLNSMKFVFIWHLIKEKVLSFLRWESFDIIRAQCAGLASYV
TRVVAPILPILNDLIKETRPSFILTTSLGGVVGSTVAECAKVPFILLHMQ
PNTPTSSFPFYLSSIPNSRLAAAEISAVFDKGNQYRAHEAHLSTYETQVD
FHTGSLSVINPFRRDEGLPEFTRDDIASIYRGEKGNQHVLQSYPMRFIPA
PPDWSSDIHIVPPLADGFIPPDWTAETCCPLLKQFLNEGEKPVCITLGSI
AVHGREAPALRKMLAVFQQTDVQRLVLIKGAAAIGEDFLQDTDENLRLWS
EEHVFWSSELVQYAWLFPQCKAVICHGGAGTLSAALRAGVPIAIAPIMSD
QYFWGDLVQRIGVGALLEKGLTASTLTDFREAVDILLSTEVQRKAFEYGV
TERAGVSGCLSAVAILANSCGMTTTSENVPKPS*
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spliced messenger RNA

>Ggra3897.t1 ID=Ggra3897.t1|Name=Ggra3897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1452bp|location=Sequence derived from alignment at tig00000908_pilon:44415..45866- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCTGCGTTCCTAATCTGTGTTGGGTCACGGGGCGATACTGAACC
CTTGACCGCGTTGGCGGTGGCTTTGGTGAACGATCCTCGTTTCGATAAGG
TCCATTTTTGCGTTCAACCGCAGTATCGGGGTCTGATTCCTAACGATGAT
CGAATCATAATTCATGAAGTTCCTTTGAGTTTGAATTCGATGAAGTTTGT
TTTCATATGGCATCTAATCAAGGAAAAGGTCCTCAGCTTCTTGCGATGGG
AGAGTTTTGACATCATCCGGGCCCAATGCGCGGGCTTGGCTAGTTACGTG
ACGCGAGTAGTCGCACCTATTCTACCCATATTGAATGATCTAATCAAAGA
AACACGCCCGTCATTTATTCTGACCACATCACTAGGAGGCGTTGTTGGTA
GTACGGTGGCAGAATGCGCCAAAGTTCCATTCATTCTCCTTCATATGCAA
CCCAATACCCCGACATCCAGCTTCCCGTTTTATCTTAGTAGTATTCCTAA
CTCCCGACTCGCTGCTGCCGAAATATCGGCTGTCTTCGACAAGGGGAACC
AGTACCGAGCGCACGAAGCTCATCTTTCAACATATGAAACACAAGTTGAT
TTCCACACTGGCTCGCTGTCGGTGATCAACCCATTTCGACGAGATGAAGG
CCTTCCAGAATTTACAAGGGATGACATTGCATCTATCTATCGCGGGGAAA
AAGGGAATCAACACGTCTTGCAGTCATATCCTATGCGATTTATTCCTGCA
CCACCGGATTGGTCGAGCGATATTCATATTGTCCCCCCTTTGGCCGACGG
TTTTATTCCTCCCGATTGGACTGCCGAGACATGTTGCCCTCTTCTGAAGC
AGTTCTTGAATGAGGGTGAAAAGCCAGTGTGTATAACGTTGGGATCGATA
GCAGTGCATGGCCGAGAGGCTCCAGCACTACGAAAGATGCTAGCCGTATT
CCAACAAACTGATGTGCAGCGTTTGGTATTGATCAAAGGTGCCGCAGCTA
TAGGAGAGGATTTTTTGCAAGACACAGATGAGAACTTGCGTCTTTGGAGC
GAAGAACATGTGTTTTGGTCTTCGGAACTCGTCCAGTATGCCTGGTTGTT
TCCACAGTGCAAGGCCGTAATTTGTCACGGCGGAGCAGGTACTCTTTCCG
CAGCACTTCGGGCTGGTGTACCGATCGCCATTGCTCCAATTATGTCGGAT
CAATACTTTTGGGGTGATTTGGTGCAGCGGATTGGCGTGGGTGCCTTGTT
AGAGAAGGGACTGACCGCTTCTACTTTGACTGATTTCAGGGAGGCTGTGG
ATATCCTTCTGTCAACAGAGGTGCAGCGAAAGGCTTTTGAATATGGTGTA
ACGGAAAGAGCTGGAGTAAGCGGTTGTTTGTCGGCAGTAGCAATACTCGC
AAACTCATGTGGGATGACTACCACTTCAGAGAATGTCCCTAAGCCAAGCT
GA
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protein sequence of Ggra3897.t1

>Ggra3897.t1 ID=Ggra3897.t1|Name=Ggra3897.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=484bp
MTSAFLICVGSRGDTEPLTALAVALVNDPRFDKVHFCVQPQYRGLIPNDD
RIIIHEVPLSLNSMKFVFIWHLIKEKVLSFLRWESFDIIRAQCAGLASYV
TRVVAPILPILNDLIKETRPSFILTTSLGGVVGSTVAECAKVPFILLHMQ
PNTPTSSFPFYLSSIPNSRLAAAEISAVFDKGNQYRAHEAHLSTYETQVD
FHTGSLSVINPFRRDEGLPEFTRDDIASIYRGEKGNQHVLQSYPMRFIPA
PPDWSSDIHIVPPLADGFIPPDWTAETCCPLLKQFLNEGEKPVCITLGSI
AVHGREAPALRKMLAVFQQTDVQRLVLIKGAAAIGEDFLQDTDENLRLWS
EEHVFWSSELVQYAWLFPQCKAVICHGGAGTLSAALRAGVPIAIAPIMSD
QYFWGDLVQRIGVGALLEKGLTASTLTDFREAVDILLSTEVQRKAFEYGV
TERAGVSGCLSAVAILANSCGMTTTSENVPKPS*
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mRNA from alignment at tig00000908_pilon:44415..45866-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3897.t1 ID=Ggra3897.t1|Name=Ggra3897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1452bp|location=Sequence derived from alignment at tig00000908_pilon:44415..45866- (Gracilaria gracilis GNS1m male)
ATGACATCTGCGTTCCTAATCTGTGTTGGGTCACGGGGCGATACTGAACC
CTTGACCGCGTTGGCGGTGGCTTTGGTGAACGATCCTCGTTTCGATAAGG
TCCATTTTTGCGTTCAACCGCAGTATCGGGGTCTGATTCCTAACGATGAT
CGAATCATAATTCATGAAGTTCCTTTGAGTTTGAATTCGATGAAGTTTGT
TTTCATATGGCATCTAATCAAGGAAAAGGTCCTCAGCTTCTTGCGATGGG
AGAGTTTTGACATCATCCGGGCCCAATGCGCGGGCTTGGCTAGTTACGTG
ACGCGAGTAGTCGCACCTATTCTACCCATATTGAATGATCTAATCAAAGA
AACACGCCCGTCATTTATTCTGACCACATCACTAGGAGGCGTTGTTGGTA
GTACGGTGGCAGAATGCGCCAAAGTTCCATTCATTCTCCTTCATATGCAA
CCCAATACCCCGACATCCAGCTTCCCGTTTTATCTTAGTAGTATTCCTAA
CTCCCGACTCGCTGCTGCCGAAATATCGGCTGTCTTCGACAAGGGGAACC
AGTACCGAGCGCACGAAGCTCATCTTTCAACATATGAAACACAAGTTGAT
TTCCACACTGGCTCGCTGTCGGTGATCAACCCATTTCGACGAGATGAAGG
CCTTCCAGAATTTACAAGGGATGACATTGCATCTATCTATCGCGGGGAAA
AAGGGAATCAACACGTCTTGCAGTCATATCCTATGCGATTTATTCCTGCA
CCACCGGATTGGTCGAGCGATATTCATATTGTCCCCCCTTTGGCCGACGG
TTTTATTCCTCCCGATTGGACTGCCGAGACATGTTGCCCTCTTCTGAAGC
AGTTCTTGAATGAGGGTGAAAAGCCAGTGTGTATAACGTTGGGATCGATA
GCAGTGCATGGCCGAGAGGCTCCAGCACTACGAAAGATGCTAGCCGTATT
CCAACAAACTGATGTGCAGCGTTTGGTATTGATCAAAGGTGCCGCAGCTA
TAGGAGAGGATTTTTTGCAAGACACAGATGAGAACTTGCGTCTTTGGAGC
GAAGAACATGTGTTTTGGTCTTCGGAACTCGTCCAGTATGCCTGGTTGTT
TCCACAGTGCAAGGCCGTAATTTGTCACGGCGGAGCAGGTACTCTTTCCG
CAGCACTTCGGGCTGGTGTACCGATCGCCATTGCTCCAATTATGTCGGAT
CAATACTTTTGGGGTGATTTGGTGCAGCGGATTGGCGTGGGTGCCTTGTT
AGAGAAGGGACTGACCGCTTCTACTTTGACTGATTTCAGGGAGGCTGTGG
ATATCCTTCTGTCAACAGAGGTGCAGCGAAAGGCTTTTGAATATGGTGTA
ACGGAAAGAGCTGGAGTAAGCGGTTGTTTGTCGGCAGTAGCAATACTCGC
AAACTCATGTGGGATGACTACCACTTCAGAGAATGTCCCTAAGCCAAGCT
GA
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Coding sequence (CDS) from alignment at tig00000908_pilon:44415..45866-

>Ggra3897.t1 ID=Ggra3897.t1|Name=Ggra3897.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1452bp|location=Sequence derived from alignment at tig00000908_pilon:44415..45866- (Gracilaria gracilis GNS1m male)
ATGACATCTGCGTTCCTAATCTGTGTTGGGTCACGGGGCGATACTGAACC
CTTGACCGCGTTGGCGGTGGCTTTGGTGAACGATCCTCGTTTCGATAAGG
TCCATTTTTGCGTTCAACCGCAGTATCGGGGTCTGATTCCTAACGATGAT
CGAATCATAATTCATGAAGTTCCTTTGAGTTTGAATTCGATGAAGTTTGT
TTTCATATGGCATCTAATCAAGGAAAAGGTCCTCAGCTTCTTGCGATGGG
AGAGTTTTGACATCATCCGGGCCCAATGCGCGGGCTTGGCTAGTTACGTG
ACGCGAGTAGTCGCACCTATTCTACCCATATTGAATGATCTAATCAAAGA
AACACGCCCGTCATTTATTCTGACCACATCACTAGGAGGCGTTGTTGGTA
GTACGGTGGCAGAATGCGCCAAAGTTCCATTCATTCTCCTTCATATGCAA
CCCAATACCCCGACATCCAGCTTCCCGTTTTATCTTAGTAGTATTCCTAA
CTCCCGACTCGCTGCTGCCGAAATATCGGCTGTCTTCGACAAGGGGAACC
AGTACCGAGCGCACGAAGCTCATCTTTCAACATATGAAACACAAGTTGAT
TTCCACACTGGCTCGCTGTCGGTGATCAACCCATTTCGACGAGATGAAGG
CCTTCCAGAATTTACAAGGGATGACATTGCATCTATCTATCGCGGGGAAA
AAGGGAATCAACACGTCTTGCAGTCATATCCTATGCGATTTATTCCTGCA
CCACCGGATTGGTCGAGCGATATTCATATTGTCCCCCCTTTGGCCGACGG
TTTTATTCCTCCCGATTGGACTGCCGAGACATGTTGCCCTCTTCTGAAGC
AGTTCTTGAATGAGGGTGAAAAGCCAGTGTGTATAACGTTGGGATCGATA
GCAGTGCATGGCCGAGAGGCTCCAGCACTACGAAAGATGCTAGCCGTATT
CCAACAAACTGATGTGCAGCGTTTGGTATTGATCAAAGGTGCCGCAGCTA
TAGGAGAGGATTTTTTGCAAGACACAGATGAGAACTTGCGTCTTTGGAGC
GAAGAACATGTGTTTTGGTCTTCGGAACTCGTCCAGTATGCCTGGTTGTT
TCCACAGTGCAAGGCCGTAATTTGTCACGGCGGAGCAGGTACTCTTTCCG
CAGCACTTCGGGCTGGTGTACCGATCGCCATTGCTCCAATTATGTCGGAT
CAATACTTTTGGGGTGATTTGGTGCAGCGGATTGGCGTGGGTGCCTTGTT
AGAGAAGGGACTGACCGCTTCTACTTTGACTGATTTCAGGGAGGCTGTGG
ATATCCTTCTGTCAACAGAGGTGCAGCGAAAGGCTTTTGAATATGGTGTA
ACGGAAAGAGCTGGAGTAAGCGGTTGTTTGTCGGCAGTAGCAATACTCGC
AAACTCATGTGGGATGACTACCACTTCAGAGAATGTCCCTAAGCCAAGCT
GA
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