Ggra8515.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8515.t1
Unique Name	Ggra8515.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	634

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:990461..992362 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	324602.Caur_0312
PFAMs	Peripla_BP_2
Max annot lvl	32061\|Chloroflexia
KEGG ko	ko:K02016
KEGG TC	3.A.1.14
KEGG Pathway	ko02010,map02010
KEGG Module	M00240
Evalue	3.82e-24
EggNOG OGs	COG0614@1\|root,COG0614@2\|Bacteria,2G9GT@200795\|Chloroflexi,375RH@32061\|Chloroflexia
Description	PFAM periplasmic binding protein
COG category	P
BRITE	ko00000,ko00001,ko00002,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8515	Ggra8515	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 990461..992362 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8515.t1.start1	Ggra8515.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 990461..990463 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8515.t1.CDS1	Ggra8515.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 990461..992362 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8515.t1.exon1	Ggra8515.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 990461..992362 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8515.t1.stop1	Ggra8515.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 992360..992362 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8515.t1	Ggra8515.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 990461..992362 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:990461..992362+
coding sequence from alignment at tig00000041_pilon:990461..992362+

mRNA sequence

>Ggra8515.t1 ID=Ggra8515.t1|Name=Ggra8515.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=634bp
MTREAWLPSIPHSYTLTVLLLFAASVSAQSRDFNCRNPVDFCDPNTNYFP
ESSRIEIEFASTINNASYSNTYVDITATGANRTHTLAYRFVRCGCPRPPG
SENRIVLFTNPQSLHVTESPSMALLQAIDKSLETLSYVNSGTFVFSSRIR
EKIANNEIQEANVDDFEVNFTRLQSDTGLSASIIGSFEFETYREGTGNVP
FLVVPDSQEPSPLGRAEFIKVIGVFLGVAEEANSLFASIVTEYQDASIKA
REAARRPSVLLNRPILPFGKVVDLSIPVDDLYEWSLPPRDQYITDFLDDA
NADYVHERVISLGTLQFPFSQVIQDFKFARFYLNIAHFPANSTRNTLEKF
MNDLIDPDAPDSRVREAMSTLSAVKCNNVYHIENRVTADGNSNDFFESGI
INPDEILKDYVSILHPSVDFGDRQKRYMGRYEADTDEFTSDCPYNDFEGP
PPDSKIYVDSEFTVSELDRFDIERAWENAIQPELKALDIDAEYDILFEPE
NRADESDSETQTRFILRARTDPENMAKLDETPDVRQAVGRALGRDVGQLN
PDGSIIPIDDGISSIAIALIVISSIVGSGLLILCIFKLLGRGKDFEPHEM
SRDQFWGPPAGRVGSTGNDLEHQGNSEHVPETI*

spliced messenger RNA

>Ggra8515.t1 ID=Ggra8515.t1|Name=Ggra8515.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1902bp|location=Sequence derived from alignment at tig00000041_pilon:990461..992362+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCGAGAAGCCTGGTTACCCTCTATCCCACATTCTTACACGTTGAC
TGTTCTGCTGCTTTTTGCGGCTTCCGTGTCGGCGCAGTCCCGGGACTTCA
ACTGCCGTAACCCCGTGGACTTTTGTGATCCAAACACTAATTACTTTCCG
GAATCCTCAAGGATCGAAATCGAGTTTGCAAGCACCATTAACAATGCCTC
ATATTCGAATACCTATGTAGATATCACAGCCACCGGCGCAAATCGGACCC
ATACCCTTGCCTATCGCTTTGTACGATGTGGCTGCCCTCGTCCACCAGGC
TCTGAAAATCGAATCGTGCTCTTCACCAACCCACAATCTTTACATGTCAC
TGAATCTCCTTCCATGGCTTTGCTGCAGGCCATCGATAAATCTCTGGAAA
CTCTTTCCTACGTCAACTCTGGAACCTTTGTATTTTCATCTCGGATTCGT
GAAAAGATTGCGAACAATGAGATACAAGAAGCAAATGTAGATGACTTCGA
AGTCAATTTCACAAGGCTTCAATCAGACACAGGGTTGTCAGCGAGTATTA
TCGGCTCATTCGAGTTTGAAACCTATCGTGAAGGTACAGGGAATGTACCA
TTTCTTGTTGTTCCTGATTCTCAAGAACCATCTCCGCTTGGAAGAGCTGA
ATTCATCAAAGTCATAGGTGTGTTCTTGGGAGTTGCTGAAGAAGCAAATT
CATTGTTTGCCagtatcgtaacagagtatcaagatgcaagtatcaaAGCC
CGCGAGGCCGCTAGACGTCCGTCTGTGCTCCTGAACCGACCAATATTGCC
GTTTGGTAAGGTGGTGGACCTCTCGATTCCTGTTGATGACCTTTACGAAT
GGAGTCTGCCACCTCGCGATCAATACATAACAGACTTTCTTGATGATGCA
AACGCTGACTACGTACATGAGAGAGTGATAAGTTTGGGAACCCTTCAATT
TCCGTTCTCTCAAGTTATCCAAGACTTCAAGTTCGCCCGTTTTTATCTGA
ATATCGCACATTTTCCAGCGAATAGTACTCGAAATACATTGGAGAAATTC
ATGAACGACCTCATCGATCCAGATGCTCCTGACTCAAGAGTAAGAGAAGC
GATGTCCACTCTCAGCGCAGTGAAGTGCAACAATGTGTACCATATAGAAA
ACCGTGTTACGGCAGATGGTAACTCAAACGACTTTTTTGAGTCGGGGATC
ATTAACCCGGATGAAATCTTGAAAGATTATGTATCCATTCTTCACCCTTC
TGTGGATTTTGGAGATCGTCAAAAGCGATACATGGGTCGTTATGAAGCTG
ACACTGATGAGTTTACGAGTGATTGTCCATACAATGATTTTGAAGGACCG
CCTCCAGACTCAAAGATATACGTTGACAGCGAATTCACAGTGTCTGAACT
GGATCGATTTGACATTGAGCGGGCATGGGAGAATGCCATTCAACCGGAGC
TCAAGGCTCTCGATATTGATGCAGAATACGACATCTTATTTGAGCCCGAG
AATCGAGCTGATGAATCGGATAGCGAAACGCAAACCAGGTTCATATTAAG
AGCTCGCACAGATCCAGAAAACATGGCCAAACTTGACGAAACCCCGGATG
TGAGACAAGCTGTGGGGCGTGCTCTAGGTAGAGACGTCGGACAACTGAAT
CCCGATGGATCAATAATACCCATTGATGATGGCATCAGCTCAATAGCAAT
AGCCTTAATTGTTATCTCAAGTATTGTCGGCAGCGGCTTGCTTATTCTTT
GTATATTCAAACTACTTGGGCGAGGAAAGGACTTTGAACCTCATGAAATG
TCACGAGATCAGTTTTGGGGCCCGCCTGCTGGCAGAGTTGGGTCAACCGG
TAATGACCTAGAGCACCAGGGAAACAGTGAACACGTACCAGAAACAATCT
AA

protein sequence of Ggra8515.t1

>Ggra8515.t1 ID=Ggra8515.t1|Name=Ggra8515.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=634bp
MTREAWLPSIPHSYTLTVLLLFAASVSAQSRDFNCRNPVDFCDPNTNYFP
ESSRIEIEFASTINNASYSNTYVDITATGANRTHTLAYRFVRCGCPRPPG
SENRIVLFTNPQSLHVTESPSMALLQAIDKSLETLSYVNSGTFVFSSRIR
EKIANNEIQEANVDDFEVNFTRLQSDTGLSASIIGSFEFETYREGTGNVP
FLVVPDSQEPSPLGRAEFIKVIGVFLGVAEEANSLFASIVTEYQDASIKA
REAARRPSVLLNRPILPFGKVVDLSIPVDDLYEWSLPPRDQYITDFLDDA
NADYVHERVISLGTLQFPFSQVIQDFKFARFYLNIAHFPANSTRNTLEKF
MNDLIDPDAPDSRVREAMSTLSAVKCNNVYHIENRVTADGNSNDFFESGI
INPDEILKDYVSILHPSVDFGDRQKRYMGRYEADTDEFTSDCPYNDFEGP
PPDSKIYVDSEFTVSELDRFDIERAWENAIQPELKALDIDAEYDILFEPE
NRADESDSETQTRFILRARTDPENMAKLDETPDVRQAVGRALGRDVGQLN
PDGSIIPIDDGISSIAIALIVISSIVGSGLLILCIFKLLGRGKDFEPHEM
SRDQFWGPPAGRVGSTGNDLEHQGNSEHVPETI*

mRNA from alignment at tig00000041_pilon:990461..992362+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8515.t1 ID=Ggra8515.t1|Name=Ggra8515.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1902bp|location=Sequence derived from alignment at tig00000041_pilon:990461..992362+ (Gracilaria gracilis GNS1m male)
ATGACGCGAGAAGCCTGGTTACCCTCTATCCCACATTCTTACACGTTGAC
TGTTCTGCTGCTTTTTGCGGCTTCCGTGTCGGCGCAGTCCCGGGACTTCA
ACTGCCGTAACCCCGTGGACTTTTGTGATCCAAACACTAATTACTTTCCG
GAATCCTCAAGGATCGAAATCGAGTTTGCAAGCACCATTAACAATGCCTC
ATATTCGAATACCTATGTAGATATCACAGCCACCGGCGCAAATCGGACCC
ATACCCTTGCCTATCGCTTTGTACGATGTGGCTGCCCTCGTCCACCAGGC
TCTGAAAATCGAATCGTGCTCTTCACCAACCCACAATCTTTACATGTCAC
TGAATCTCCTTCCATGGCTTTGCTGCAGGCCATCGATAAATCTCTGGAAA
CTCTTTCCTACGTCAACTCTGGAACCTTTGTATTTTCATCTCGGATTCGT
GAAAAGATTGCGAACAATGAGATACAAGAAGCAAATGTAGATGACTTCGA
AGTCAATTTCACAAGGCTTCAATCAGACACAGGGTTGTCAGCGAGTATTA
TCGGCTCATTCGAGTTTGAAACCTATCGTGAAGGTACAGGGAATGTACCA
TTTCTTGTTGTTCCTGATTCTCAAGAACCATCTCCGCTTGGAAGAGCTGA
ATTCATCAAAGTCATAGGTGTGTTCTTGGGAGTTGCTGAAGAAGCAAATT
CATTGTTTGCCagtatcgtaacagagtatcaagatgcaagtatcaaAGCC
CGCGAGGCCGCTAGACGTCCGTCTGTGCTCCTGAACCGACCAATATTGCC
GTTTGGTAAGGTGGTGGACCTCTCGATTCCTGTTGATGACCTTTACGAAT
GGAGTCTGCCACCTCGCGATCAATACATAACAGACTTTCTTGATGATGCA
AACGCTGACTACGTACATGAGAGAGTGATAAGTTTGGGAACCCTTCAATT
TCCGTTCTCTCAAGTTATCCAAGACTTCAAGTTCGCCCGTTTTTATCTGA
ATATCGCACATTTTCCAGCGAATAGTACTCGAAATACATTGGAGAAATTC
ATGAACGACCTCATCGATCCAGATGCTCCTGACTCAAGAGTAAGAGAAGC
GATGTCCACTCTCAGCGCAGTGAAGTGCAACAATGTGTACCATATAGAAA
ACCGTGTTACGGCAGATGGTAACTCAAACGACTTTTTTGAGTCGGGGATC
ATTAACCCGGATGAAATCTTGAAAGATTATGTATCCATTCTTCACCCTTC
TGTGGATTTTGGAGATCGTCAAAAGCGATACATGGGTCGTTATGAAGCTG
ACACTGATGAGTTTACGAGTGATTGTCCATACAATGATTTTGAAGGACCG
CCTCCAGACTCAAAGATATACGTTGACAGCGAATTCACAGTGTCTGAACT
GGATCGATTTGACATTGAGCGGGCATGGGAGAATGCCATTCAACCGGAGC
TCAAGGCTCTCGATATTGATGCAGAATACGACATCTTATTTGAGCCCGAG
AATCGAGCTGATGAATCGGATAGCGAAACGCAAACCAGGTTCATATTAAG
AGCTCGCACAGATCCAGAAAACATGGCCAAACTTGACGAAACCCCGGATG
TGAGACAAGCTGTGGGGCGTGCTCTAGGTAGAGACGTCGGACAACTGAAT
CCCGATGGATCAATAATACCCATTGATGATGGCATCAGCTCAATAGCAAT
AGCCTTAATTGTTATCTCAAGTATTGTCGGCAGCGGCTTGCTTATTCTTT
GTATATTCAAACTACTTGGGCGAGGAAAGGACTTTGAACCTCATGAAATG
TCACGAGATCAGTTTTGGGGCCCGCCTGCTGGCAGAGTTGGGTCAACCGG
TAATGACCTAGAGCACCAGGGAAACAGTGAACACGTACCAGAAACAATCT
AA

Coding sequence (CDS) from alignment at tig00000041_pilon:990461..992362+

>Ggra8515.t1 ID=Ggra8515.t1|Name=Ggra8515.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1902bp|location=Sequence derived from alignment at tig00000041_pilon:990461..992362+ (Gracilaria gracilis GNS1m male)
ATGACGCGAGAAGCCTGGTTACCCTCTATCCCACATTCTTACACGTTGAC
TGTTCTGCTGCTTTTTGCGGCTTCCGTGTCGGCGCAGTCCCGGGACTTCA
ACTGCCGTAACCCCGTGGACTTTTGTGATCCAAACACTAATTACTTTCCG
GAATCCTCAAGGATCGAAATCGAGTTTGCAAGCACCATTAACAATGCCTC
ATATTCGAATACCTATGTAGATATCACAGCCACCGGCGCAAATCGGACCC
ATACCCTTGCCTATCGCTTTGTACGATGTGGCTGCCCTCGTCCACCAGGC
TCTGAAAATCGAATCGTGCTCTTCACCAACCCACAATCTTTACATGTCAC
TGAATCTCCTTCCATGGCTTTGCTGCAGGCCATCGATAAATCTCTGGAAA
CTCTTTCCTACGTCAACTCTGGAACCTTTGTATTTTCATCTCGGATTCGT
GAAAAGATTGCGAACAATGAGATACAAGAAGCAAATGTAGATGACTTCGA
AGTCAATTTCACAAGGCTTCAATCAGACACAGGGTTGTCAGCGAGTATTA
TCGGCTCATTCGAGTTTGAAACCTATCGTGAAGGTACAGGGAATGTACCA
TTTCTTGTTGTTCCTGATTCTCAAGAACCATCTCCGCTTGGAAGAGCTGA
ATTCATCAAAGTCATAGGTGTGTTCTTGGGAGTTGCTGAAGAAGCAAATT
CATTGTTTGCCagtatcgtaacagagtatcaagatgcaagtatcaaAGCC
CGCGAGGCCGCTAGACGTCCGTCTGTGCTCCTGAACCGACCAATATTGCC
GTTTGGTAAGGTGGTGGACCTCTCGATTCCTGTTGATGACCTTTACGAAT
GGAGTCTGCCACCTCGCGATCAATACATAACAGACTTTCTTGATGATGCA
AACGCTGACTACGTACATGAGAGAGTGATAAGTTTGGGAACCCTTCAATT
TCCGTTCTCTCAAGTTATCCAAGACTTCAAGTTCGCCCGTTTTTATCTGA
ATATCGCACATTTTCCAGCGAATAGTACTCGAAATACATTGGAGAAATTC
ATGAACGACCTCATCGATCCAGATGCTCCTGACTCAAGAGTAAGAGAAGC
GATGTCCACTCTCAGCGCAGTGAAGTGCAACAATGTGTACCATATAGAAA
ACCGTGTTACGGCAGATGGTAACTCAAACGACTTTTTTGAGTCGGGGATC
ATTAACCCGGATGAAATCTTGAAAGATTATGTATCCATTCTTCACCCTTC
TGTGGATTTTGGAGATCGTCAAAAGCGATACATGGGTCGTTATGAAGCTG
ACACTGATGAGTTTACGAGTGATTGTCCATACAATGATTTTGAAGGACCG
CCTCCAGACTCAAAGATATACGTTGACAGCGAATTCACAGTGTCTGAACT
GGATCGATTTGACATTGAGCGGGCATGGGAGAATGCCATTCAACCGGAGC
TCAAGGCTCTCGATATTGATGCAGAATACGACATCTTATTTGAGCCCGAG
AATCGAGCTGATGAATCGGATAGCGAAACGCAAACCAGGTTCATATTAAG
AGCTCGCACAGATCCAGAAAACATGGCCAAACTTGACGAAACCCCGGATG
TGAGACAAGCTGTGGGGCGTGCTCTAGGTAGAGACGTCGGACAACTGAAT
CCCGATGGATCAATAATACCCATTGATGATGGCATCAGCTCAATAGCAAT
AGCCTTAATTGTTATCTCAAGTATTGTCGGCAGCGGCTTGCTTATTCTTT
GTATATTCAAACTACTTGGGCGAGGAAAGGACTTTGAACCTCATGAAATG
TCACGAGATCAGTTTTGGGGCCCGCCTGCTGGCAGAGTTGGGTCAACCGG
TAATGACCTAGAGCACCAGGGAAACAGTGAACACGTACCAGAAACAATCT
AA