Ggra3923.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3923.t1
Unique NameGgra3923.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:105319..106092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP04522
PFAMsDUF179
Max annot lvl3041|Chlorophyta
KEGG koko:K07735
Evalue4.04e-27
EggNOG OGsCOG1678@1|root,2QRDU@2759|Eukaryota,37R3S@33090|Viridiplantae,34KT0@3041|Chlorophyta
DescriptionUncharacterized ACR, COG1678
COG categoryK
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3923Ggra3923Gracilaria gracilis GNS1m malegenetig00000908_pilon 105319..106092 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3923.t1.stop1Ggra3923.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 105319..105321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3923.t1.CDS1Ggra3923.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 105319..106092 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3923.t1.exon1Ggra3923.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 105319..106092 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3923.t1.start1Ggra3923.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 106090..106092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3923.t1Ggra3923.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 105319..106092 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3923.t1 ID=Ggra3923.t1|Name=Ggra3923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=258bp
MTAAAFVNPTPLLAARKRVERRMCRRALPRLSAAPAGMPTPSETPSTPDW
RAFRAQLSVQHRLNQTPTHHSSAELMHWAQRQHHVERGVVLVAAPEYRWQ
PAFCHLSHAVILITDVCATGVCGLLLNRPTNYTVRHHRSVLARVGPHFSD
NVVHLGGDCSTGSLEVLHSLPPSVCPGAAEVVPGVFRGGFNASRQLVKSG
SQQPNAFRFFVAYSQWTWDTLRAEMDRGAWITVSCSPSLLLQHDTHSLWS
TIMRMIS*
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spliced messenger RNA

>Ggra3923.t1 ID=Ggra3923.t1|Name=Ggra3923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000908_pilon:105319..106092- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCCGCGGCTTTTGTGAACCCCACGCCGCTGTTGGCGGCGCGCAA
GCGCGTGGAGAGGCGTATGTGTCGCCGTGCGCTTCCAAGGCTGTCGGCTG
CGCCTGCTGGTATGCCCACGCCCTCTGAGACGCCGTCCACGCCGGACTGG
CGTGCTTTCCGCGCGCAGCTTTCCGTGCAGCACAGGTTGAACCAGACGCC
CACGCACCATTCCAGCGCAGAGCTTATGCACTGGGCGCAGCGACAGCATC
ACGTGGAGCGTGGTGTAGTGCTAGTGGCTGCGCCAGAGTATCGATGGCAG
CCTGCGTTTTGTCACTTATCGCATGCGGTGATTCTTATAACGGATGTTTG
CGCGACGGGCGTTTGCGGCTTGTTGCTGAACCGACCGACCAATTATACTG
TGCGACACCATCGCTCGGTTCTGGCGCGCGTGGGACCTCACTTCAGTGAC
AATGTGGTGCATCTTGGCGGTGATTGTTCCACAGGCTCTTTGGAGGTTTT
GCATTCGTTGCCACCTAGCGTGTGCCCGGGCGCGGCGGAGGTTGTGCCCG
GCGTGTTCCGAGGTGGGTTTAACGCCAGTCGACAGCTGGTGAAGAGCGGC
TCGCAACAACCCAATGCTTTCCGGTTCTTCGTGGCGTACTCGCAGTGGAC
GTGGGATACCCTGCGTGCTGAGATGGATCGAGGCGCGTGGATTACTGTTA
GCTGTTCGCCTTCTCTGCTGCTGCAGCACGATACGCACAGCCTTTGGTCT
ACCATCATGCGAATGATCTCGTAG
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protein sequence of Ggra3923.t1

>Ggra3923.t1 ID=Ggra3923.t1|Name=Ggra3923.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=258bp
MTAAAFVNPTPLLAARKRVERRMCRRALPRLSAAPAGMPTPSETPSTPDW
RAFRAQLSVQHRLNQTPTHHSSAELMHWAQRQHHVERGVVLVAAPEYRWQ
PAFCHLSHAVILITDVCATGVCGLLLNRPTNYTVRHHRSVLARVGPHFSD
NVVHLGGDCSTGSLEVLHSLPPSVCPGAAEVVPGVFRGGFNASRQLVKSG
SQQPNAFRFFVAYSQWTWDTLRAEMDRGAWITVSCSPSLLLQHDTHSLWS
TIMRMIS*
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mRNA from alignment at tig00000908_pilon:105319..106092-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3923.t1 ID=Ggra3923.t1|Name=Ggra3923.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000908_pilon:105319..106092- (Gracilaria gracilis GNS1m male)
ATGACTGCCGCGGCTTTTGTGAACCCCACGCCGCTGTTGGCGGCGCGCAA
GCGCGTGGAGAGGCGTATGTGTCGCCGTGCGCTTCCAAGGCTGTCGGCTG
CGCCTGCTGGTATGCCCACGCCCTCTGAGACGCCGTCCACGCCGGACTGG
CGTGCTTTCCGCGCGCAGCTTTCCGTGCAGCACAGGTTGAACCAGACGCC
CACGCACCATTCCAGCGCAGAGCTTATGCACTGGGCGCAGCGACAGCATC
ACGTGGAGCGTGGTGTAGTGCTAGTGGCTGCGCCAGAGTATCGATGGCAG
CCTGCGTTTTGTCACTTATCGCATGCGGTGATTCTTATAACGGATGTTTG
CGCGACGGGCGTTTGCGGCTTGTTGCTGAACCGACCGACCAATTATACTG
TGCGACACCATCGCTCGGTTCTGGCGCGCGTGGGACCTCACTTCAGTGAC
AATGTGGTGCATCTTGGCGGTGATTGTTCCACAGGCTCTTTGGAGGTTTT
GCATTCGTTGCCACCTAGCGTGTGCCCGGGCGCGGCGGAGGTTGTGCCCG
GCGTGTTCCGAGGTGGGTTTAACGCCAGTCGACAGCTGGTGAAGAGCGGC
TCGCAACAACCCAATGCTTTCCGGTTCTTCGTGGCGTACTCGCAGTGGAC
GTGGGATACCCTGCGTGCTGAGATGGATCGAGGCGCGTGGATTACTGTTA
GCTGTTCGCCTTCTCTGCTGCTGCAGCACGATACGCACAGCCTTTGGTCT
ACCATCATGCGAATGATCTCGTAG
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Coding sequence (CDS) from alignment at tig00000908_pilon:105319..106092-

>Ggra3923.t1 ID=Ggra3923.t1|Name=Ggra3923.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=774bp|location=Sequence derived from alignment at tig00000908_pilon:105319..106092- (Gracilaria gracilis GNS1m male)
ATGACTGCCGCGGCTTTTGTGAACCCCACGCCGCTGTTGGCGGCGCGCAA
GCGCGTGGAGAGGCGTATGTGTCGCCGTGCGCTTCCAAGGCTGTCGGCTG
CGCCTGCTGGTATGCCCACGCCCTCTGAGACGCCGTCCACGCCGGACTGG
CGTGCTTTCCGCGCGCAGCTTTCCGTGCAGCACAGGTTGAACCAGACGCC
CACGCACCATTCCAGCGCAGAGCTTATGCACTGGGCGCAGCGACAGCATC
ACGTGGAGCGTGGTGTAGTGCTAGTGGCTGCGCCAGAGTATCGATGGCAG
CCTGCGTTTTGTCACTTATCGCATGCGGTGATTCTTATAACGGATGTTTG
CGCGACGGGCGTTTGCGGCTTGTTGCTGAACCGACCGACCAATTATACTG
TGCGACACCATCGCTCGGTTCTGGCGCGCGTGGGACCTCACTTCAGTGAC
AATGTGGTGCATCTTGGCGGTGATTGTTCCACAGGCTCTTTGGAGGTTTT
GCATTCGTTGCCACCTAGCGTGTGCCCGGGCGCGGCGGAGGTTGTGCCCG
GCGTGTTCCGAGGTGGGTTTAACGCCAGTCGACAGCTGGTGAAGAGCGGC
TCGCAACAACCCAATGCTTTCCGGTTCTTCGTGGCGTACTCGCAGTGGAC
GTGGGATACCCTGCGTGCTGAGATGGATCGAGGCGCGTGGATTACTGTTA
GCTGTTCGCCTTCTCTGCTGCTGCAGCACGATACGCACAGCCTTTGGTCT
ACCATCATGCGAATGATCTCGTAG
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