Ggra8486.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8486.t1
Unique NameGgra8486.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:861634..862317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8486Ggra8486Gracilaria gracilis GNS1m malegenetig00000041_pilon 861634..862317 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8486.t1.stop1Ggra8486.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000041_pilon 861634..861636 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8486.t1.CDS1Ggra8486.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000041_pilon 861634..862317 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8486.t1.exon1Ggra8486.t1.exon1Gracilaria gracilis GNS1m maleexontig00000041_pilon 861634..862317 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8486.t1.start1Ggra8486.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000041_pilon 862315..862317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8486.t1Ggra8486.t1Gracilaria gracilis GNS1m malepolypeptidetig00000041_pilon 861634..862317 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8486.t1 ID=Ggra8486.t1|Name=Ggra8486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=228bp
MIGAVAPAPDRHDDASAVTRTLIRGTLPLINAKPLIFLVKCLCPEKGQLG
DFREWDRVYNSTPDAKAPKASVRLRTHLPPSPNAMRHTLMYFGAKDRRVP
APCESRTVSLVDIGPEADAFLSLLGCVFAFEYMRRGLRFRTRNGIIIDIF
TIEKFEKRHDIASTTPLVPPENNHAVIELISEQTASPEELQAFVHHLSPY
IHIHSPPQPKLSPRRRLSPQPRPVSRP*
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spliced messenger RNA

>Ggra8486.t1 ID=Ggra8486.t1|Name=Ggra8486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00000041_pilon:861634..862317- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGGCGCCGTCGCACCCGCGCCCGACCGCCACGACGACGCTTCCGC
CGTCACGCGCACGCTCATTCGCGGCACGCTGCCGCTCATCAACGCCAAGC
CGCTCATCTTCCTCGTCAAGTGTCTGTGCCCGGAGAAGGGGCAACTGGGC
GACTTTCGCGAATGGGACCGCGTGTACAACTCCACGCCGGACGCCAAGGC
GCCCAAGGCTTCCGTGCGCCTGCGTACTCATTTGCCGCCTTCGCCAAACG
CCATGCGACACACGCTCATGTACTTTGGCGCCAAGGATAGACGTGTGCCC
GCGCCTTGCGAGAGCCGAACCGTTTCGCTGGTCGACATTGGACCGGAGGC
TGATGCCTTTCTGTCGTTGCTTGGATGCGTGTTTGCGTTCGAGTATATGA
GGAGGGGACTCCGCTTTCGTACTAGAAATGGTATCATTATTGATATCTTT
ACCATTGAAAAGTTTGAGAAGCGACATGATATTGCGTCTACTACGCCTTT
AGTACCACCAGAAAACAACCACGCTGTCATTGAGCTAATCTCCGAACAAA
CCGCTTCTCCGGAAGAACTGCAAGCTTTTGTACATCACTTGTCGCCATAT
ATTCACATACATTCTCCTCCTCAACCAAAGCTGTCTCCGAGACGACGATT
ATCGCCACAGCCGAGGCCAGTGTCACGCCCTTAA
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protein sequence of Ggra8486.t1

>Ggra8486.t1 ID=Ggra8486.t1|Name=Ggra8486.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=228bp
MIGAVAPAPDRHDDASAVTRTLIRGTLPLINAKPLIFLVKCLCPEKGQLG
DFREWDRVYNSTPDAKAPKASVRLRTHLPPSPNAMRHTLMYFGAKDRRVP
APCESRTVSLVDIGPEADAFLSLLGCVFAFEYMRRGLRFRTRNGIIIDIF
TIEKFEKRHDIASTTPLVPPENNHAVIELISEQTASPEELQAFVHHLSPY
IHIHSPPQPKLSPRRRLSPQPRPVSRP*
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mRNA from alignment at tig00000041_pilon:861634..862317-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8486.t1 ID=Ggra8486.t1|Name=Ggra8486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00000041_pilon:861634..862317- (Gracilaria gracilis GNS1m male)
ATGATCGGCGCCGTCGCACCCGCGCCCGACCGCCACGACGACGCTTCCGC
CGTCACGCGCACGCTCATTCGCGGCACGCTGCCGCTCATCAACGCCAAGC
CGCTCATCTTCCTCGTCAAGTGTCTGTGCCCGGAGAAGGGGCAACTGGGC
GACTTTCGCGAATGGGACCGCGTGTACAACTCCACGCCGGACGCCAAGGC
GCCCAAGGCTTCCGTGCGCCTGCGTACTCATTTGCCGCCTTCGCCAAACG
CCATGCGACACACGCTCATGTACTTTGGCGCCAAGGATAGACGTGTGCCC
GCGCCTTGCGAGAGCCGAACCGTTTCGCTGGTCGACATTGGACCGGAGGC
TGATGCCTTTCTGTCGTTGCTTGGATGCGTGTTTGCGTTCGAGTATATGA
GGAGGGGACTCCGCTTTCGTACTAGAAATGGTATCATTATTGATATCTTT
ACCATTGAAAAGTTTGAGAAGCGACATGATATTGCGTCTACTACGCCTTT
AGTACCACCAGAAAACAACCACGCTGTCATTGAGCTAATCTCCGAACAAA
CCGCTTCTCCGGAAGAACTGCAAGCTTTTGTACATCACTTGTCGCCATAT
ATTCACATACATTCTCCTCCTCAACCAAAGCTGTCTCCGAGACGACGATT
ATCGCCACAGCCGAGGCCAGTGTCACGCCCTTAA
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Coding sequence (CDS) from alignment at tig00000041_pilon:861634..862317-

>Ggra8486.t1 ID=Ggra8486.t1|Name=Ggra8486.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00000041_pilon:861634..862317- (Gracilaria gracilis GNS1m male)
ATGATCGGCGCCGTCGCACCCGCGCCCGACCGCCACGACGACGCTTCCGC
CGTCACGCGCACGCTCATTCGCGGCACGCTGCCGCTCATCAACGCCAAGC
CGCTCATCTTCCTCGTCAAGTGTCTGTGCCCGGAGAAGGGGCAACTGGGC
GACTTTCGCGAATGGGACCGCGTGTACAACTCCACGCCGGACGCCAAGGC
GCCCAAGGCTTCCGTGCGCCTGCGTACTCATTTGCCGCCTTCGCCAAACG
CCATGCGACACACGCTCATGTACTTTGGCGCCAAGGATAGACGTGTGCCC
GCGCCTTGCGAGAGCCGAACCGTTTCGCTGGTCGACATTGGACCGGAGGC
TGATGCCTTTCTGTCGTTGCTTGGATGCGTGTTTGCGTTCGAGTATATGA
GGAGGGGACTCCGCTTTCGTACTAGAAATGGTATCATTATTGATATCTTT
ACCATTGAAAAGTTTGAGAAGCGACATGATATTGCGTCTACTACGCCTTT
AGTACCACCAGAAAACAACCACGCTGTCATTGAGCTAATCTCCGAACAAA
CCGCTTCTCCGGAAGAACTGCAAGCTTTTGTACATCACTTGTCGCCATAT
ATTCACATACATTCTCCTCCTCAACCAAAGCTGTCTCCGAGACGACGATT
ATCGCCACAGCCGAGGCCAGTGTCACGCCCTTAA
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