Ggra8487.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8487.t1
Unique NameGgra8487.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length292
Homology
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BLAST of Ggra8487.t1 vs. uniprot
Match: A0A2V3II91 (GOLD domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II91_9FLOR)

HSP 1 Score: 357 bits (917), Expect = 1.020e-121
Identity = 173/259 (66.80%), Postives = 207/259 (79.92%), Query Frame = 0 
Query:   33 MFHLSRGATQCFTMNAKVGSKIHGEIRVALGSGHMDVGYFLLIGVTNDMLAGKNDIEHETFSVVAPGGPHHGHDEHSTPAEYKLCVYNRAPVNSAQDYRVIHVTFAADSGADEFEDERGPLEGLATGSNVKQIENTIRHIQSTVDAVMDEIDSIRIREGDMFTTTDRMAFQMTLMGIIACAAILLAGLLQVMQTKTELVKHADRLLDASTQMSREGSKKMSRQGSFVMPAVPNMSRLTSLTSKHVLPQHG-SAHAAPKK 290
            MFHL RG TQCFT+NA  GSK+HGEIRV  G G M+VGY LL+G TN  L GK  I+ E FS +AP GPHHGHDEHSTPAEYKLC+YNRA ++ +QDYRV+H+TF+AD GAD+FED RGPLEGLATGSNVK+IE TIR I+ T+   +DEID+IRIREG+MF  TDRMAFQMTLMGII C A+++ G+LQV+QTK ELVKH DRLL  S ++ REGSKK+SRQGSFV+P+ P + RL S+ +  VLP+HG S    PKK
Sbjct:    1 MFHLVRGFTQCFTVNANSGSKLHGEIRVVNGKGDMEVGYLLLVGATNAHLLGKKSIDQERFSTIAPPGPHHGHDEHSTPAEYKLCIYNRAAISGSQDYRVVHLTFSADRGADDFEDHRGPLEGLATGSNVKEIEMTIRQIEHTISNALDEIDNIRIREGEMFLVTDRMAFQMTLMGIIGCIAVIITGVLQVLQTKNELVKHGDRLLAGSGKIQREGSKKVSRQGSFVLPSAPKLGRLPSVGNTAVLPRHGASREIGPKK 259
The following BLAST results are available for this feature:
BLAST of Ggra8487.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3II911.020e-12166.80GOLD domain-containing protein n=1 Tax=Gracilariop... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 31..231
e-value: 5.5E-10
score: 49.2
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 32..225
e-value: 2.2E-17
score: 63.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..291
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 200..223
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 224..291
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..199
NoneNo IPR availableTMHMMTMhelixcoord: 201..223
IPR015720Transmembrane emp24 domain-containing proteinPANTHERPTHR22811TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEINcoord: 13..224

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:862574..863449 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8487.t1Ggra8487.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 862574..863449 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8487.t1 ID=Ggra8487.t1|Name=Ggra8487.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=292bp
MAPRRLSAGWLCVLLVVLSVVPRRARAEPESIMFHLSRGATQCFTMNAKV
GSKIHGEIRVALGSGHMDVGYFLLIGVTNDMLAGKNDIEHETFSVVAPGG
PHHGHDEHSTPAEYKLCVYNRAPVNSAQDYRVIHVTFAADSGADEFEDER
GPLEGLATGSNVKQIENTIRHIQSTVDAVMDEIDSIRIREGDMFTTTDRM
AFQMTLMGIIACAAILLAGLLQVMQTKTELVKHADRLLDASTQMSREGSK
KMSRQGSFVMPAVPNMSRLTSLTSKHVLPQHGSAHAAPKKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom
IPR015720Emp24-like