Ggra8487.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8487.t1
Unique Name	Ggra8487.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	292

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:862574..863449 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8487	Ggra8487	Gracilaria gracilis GNS1m male	gene	tig00000041_pilon 862574..863449 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8487.t1.start1	Ggra8487.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000041_pilon 862574..862576 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8487.t1.CDS1	Ggra8487.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000041_pilon 862574..863449 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8487.t1.exon1	Ggra8487.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000041_pilon 862574..863449 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8487.t1.stop1	Ggra8487.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000041_pilon 863447..863449 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8487.t1	Ggra8487.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000041_pilon 862574..863449 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000041_pilon:862574..863449+
coding sequence from alignment at tig00000041_pilon:862574..863449+

mRNA sequence

>Ggra8487.t1 ID=Ggra8487.t1|Name=Ggra8487.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=292bp
MAPRRLSAGWLCVLLVVLSVVPRRARAEPESIMFHLSRGATQCFTMNAKV
GSKIHGEIRVALGSGHMDVGYFLLIGVTNDMLAGKNDIEHETFSVVAPGG
PHHGHDEHSTPAEYKLCVYNRAPVNSAQDYRVIHVTFAADSGADEFEDER
GPLEGLATGSNVKQIENTIRHIQSTVDAVMDEIDSIRIREGDMFTTTDRM
AFQMTLMGIIACAAILLAGLLQVMQTKTELVKHADRLLDASTQMSREGSK
KMSRQGSFVMPAVPNMSRLTSLTSKHVLPQHGSAHAAPKKR*

spliced messenger RNA

>Ggra8487.t1 ID=Ggra8487.t1|Name=Ggra8487.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000041_pilon:862574..863449+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCCGCCGCTTGTCCGCCGGCTGGCTATGTGTGCTGCTCGTCGT
ACTGTCGGTGGTACCGCGGCGCGCCCGCGCAGAGCCGGAGAGCATCATGT
TTCACCTGTCTCGCGGCGCGACGCAGTGCTTCACCATGAACGCCAAGGTC
GGCTCCAAGATACATGGTGAGATCCGCGTGGCGCTTGGGAGCGGCCATAT
GGACGTGGGCTACTTCCTGTTGATTGGCGTCACCAATGATATGCTGGCAG
GAAAGAATGATATTGAGCATGAGACGTTTTCGGTCGTGGCCCCTGGTGGG
CCGCATCATGGCCATGATGAACATTCTACCCCGGCTGAATATAAGCTGTG
CGTGTACAACAGGGCGCCGGTCAACAGCGCGCAGGACTACCGTGTGATTC
ACGTTACGTTTGCGGCCGATTCCGGCGCCGATGAGTTTGAGGATGAGAGA
GGGCCGCTTGAGGGGCTGGCTACTGGCTCTAATGTCAAGCAGATTGAAAA
CACCATTCGACATATCCAGAGCACCGTCGACGCCGTCATGGACGAGATAG
ATTCCATAAGAATTCGCGAGGGGGACATGTTTACCACCACTGACAGAATG
GCCTTCCAAATGACTCTCATGGGTATCATAGCCTGTGCCGCCATCTTGCT
GGCCGGGTTGCTTCAAGTCATGCAGACCAAAACAGAACTGGTCAAACATG
CTGACCGTTTGTTGGATGCCTCCACGCAAATGTCCAGGGAGGGCAGCAAG
AAAATGAGCAGGCAAGGCAGTTTTGTCATGCCTGCCGTTCCTAACATGTC
ACGTCTTACCAGTCTAACTAGCAAACACGTTTTACCACAACATGGTTCCG
CCCACGCCGCCCCAAAGAAGAGGTAG

protein sequence of Ggra8487.t1

>Ggra8487.t1 ID=Ggra8487.t1|Name=Ggra8487.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=292bp
MAPRRLSAGWLCVLLVVLSVVPRRARAEPESIMFHLSRGATQCFTMNAKV
GSKIHGEIRVALGSGHMDVGYFLLIGVTNDMLAGKNDIEHETFSVVAPGG
PHHGHDEHSTPAEYKLCVYNRAPVNSAQDYRVIHVTFAADSGADEFEDER
GPLEGLATGSNVKQIENTIRHIQSTVDAVMDEIDSIRIREGDMFTTTDRM
AFQMTLMGIIACAAILLAGLLQVMQTKTELVKHADRLLDASTQMSREGSK
KMSRQGSFVMPAVPNMSRLTSLTSKHVLPQHGSAHAAPKKR*

mRNA from alignment at tig00000041_pilon:862574..863449+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8487.t1 ID=Ggra8487.t1|Name=Ggra8487.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000041_pilon:862574..863449+ (Gracilaria gracilis GNS1m male)
ATGGCGCCCCGCCGCTTGTCCGCCGGCTGGCTATGTGTGCTGCTCGTCGT
ACTGTCGGTGGTACCGCGGCGCGCCCGCGCAGAGCCGGAGAGCATCATGT
TTCACCTGTCTCGCGGCGCGACGCAGTGCTTCACCATGAACGCCAAGGTC
GGCTCCAAGATACATGGTGAGATCCGCGTGGCGCTTGGGAGCGGCCATAT
GGACGTGGGCTACTTCCTGTTGATTGGCGTCACCAATGATATGCTGGCAG
GAAAGAATGATATTGAGCATGAGACGTTTTCGGTCGTGGCCCCTGGTGGG
CCGCATCATGGCCATGATGAACATTCTACCCCGGCTGAATATAAGCTGTG
CGTGTACAACAGGGCGCCGGTCAACAGCGCGCAGGACTACCGTGTGATTC
ACGTTACGTTTGCGGCCGATTCCGGCGCCGATGAGTTTGAGGATGAGAGA
GGGCCGCTTGAGGGGCTGGCTACTGGCTCTAATGTCAAGCAGATTGAAAA
CACCATTCGACATATCCAGAGCACCGTCGACGCCGTCATGGACGAGATAG
ATTCCATAAGAATTCGCGAGGGGGACATGTTTACCACCACTGACAGAATG
GCCTTCCAAATGACTCTCATGGGTATCATAGCCTGTGCCGCCATCTTGCT
GGCCGGGTTGCTTCAAGTCATGCAGACCAAAACAGAACTGGTCAAACATG
CTGACCGTTTGTTGGATGCCTCCACGCAAATGTCCAGGGAGGGCAGCAAG
AAAATGAGCAGGCAAGGCAGTTTTGTCATGCCTGCCGTTCCTAACATGTC
ACGTCTTACCAGTCTAACTAGCAAACACGTTTTACCACAACATGGTTCCG
CCCACGCCGCCCCAAAGAAGAGGTAG

Coding sequence (CDS) from alignment at tig00000041_pilon:862574..863449+

>Ggra8487.t1 ID=Ggra8487.t1|Name=Ggra8487.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00000041_pilon:862574..863449+ (Gracilaria gracilis GNS1m male)
ATGGCGCCCCGCCGCTTGTCCGCCGGCTGGCTATGTGTGCTGCTCGTCGT
ACTGTCGGTGGTACCGCGGCGCGCCCGCGCAGAGCCGGAGAGCATCATGT
TTCACCTGTCTCGCGGCGCGACGCAGTGCTTCACCATGAACGCCAAGGTC
GGCTCCAAGATACATGGTGAGATCCGCGTGGCGCTTGGGAGCGGCCATAT
GGACGTGGGCTACTTCCTGTTGATTGGCGTCACCAATGATATGCTGGCAG
GAAAGAATGATATTGAGCATGAGACGTTTTCGGTCGTGGCCCCTGGTGGG
CCGCATCATGGCCATGATGAACATTCTACCCCGGCTGAATATAAGCTGTG
CGTGTACAACAGGGCGCCGGTCAACAGCGCGCAGGACTACCGTGTGATTC
ACGTTACGTTTGCGGCCGATTCCGGCGCCGATGAGTTTGAGGATGAGAGA
GGGCCGCTTGAGGGGCTGGCTACTGGCTCTAATGTCAAGCAGATTGAAAA
CACCATTCGACATATCCAGAGCACCGTCGACGCCGTCATGGACGAGATAG
ATTCCATAAGAATTCGCGAGGGGGACATGTTTACCACCACTGACAGAATG
GCCTTCCAAATGACTCTCATGGGTATCATAGCCTGTGCCGCCATCTTGCT
GGCCGGGTTGCTTCAAGTCATGCAGACCAAAACAGAACTGGTCAAACATG
CTGACCGTTTGTTGGATGCCTCCACGCAAATGTCCAGGGAGGGCAGCAAG
AAAATGAGCAGGCAAGGCAGTTTTGTCATGCCTGCCGTTCCTAACATGTC
ACGTCTTACCAGTCTAACTAGCAAACACGTTTTACCACAACATGGTTCCG
CCCACGCCGCCCCAAAGAAGAGGTAG