Ggra1866.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1866.t2
Unique NameGgra1866.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length918
Homology
BLAST of Ggra1866.t2 vs. uniprot
Match: A0A2V3IPL7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPL7_9FLOR)

HSP 1 Score: 245 bits (626), Expect = 7.600e-67
Identity = 213/652 (32.67%), Postives = 311/652 (47.70%), Query Frame = 0
Query:  315 VPWPLRMIVTDAPDLEMPAIQLWLDQLDKKHIDPFSDQP-LCTIPSRHSSILSSSP--NRVNDFNEADEAAKSKEEAIFECSIRAATAAAKGEEPLAVLHLGLLFELRFRNLSQKFAMQAPMAAKALRDAYDYYAVAAELQNTSALHHIARLLYQA----WYDRKATLPALSQSQILSLLLESAIRQNFGAYRALETVCEHGIRVAMETSSPDKNIKRLGSV-SHEGSSSVVDSDLMNVMYRMGLVLRRGDNDIHIDDKLAVGCFFIARNLGHLGASLELGLFLVERAVSLDEVRQGIDMLQTLANWPLGGNTGSVESLEACFRLGRWCLLGLPHDF------------------GRPDMKNKL--MAIRYLKPAAEQNHKEAMVQYGMLHERKIIPNGNTEGH--DALEWISKAGDCPSAFSALATLEWRKAVRNWNLQTRRALNTSFGSGSAPSGDDATTGETQQARXXXXXFFRKRGP---GSKGSDQRSXXXXXXGSLTDSSSHDEALPELRRQTARILRTAEKMFQRSQQPNDL---------------------------YPEKQYDPLPLYKLGYFYNNVKDIWGICDPNVRAADLEQKARSLLSKAIERTSSSYEGIKWKRNRRNWILEDQAVVREAESLFQKL 906
            VPWPLRM+VTDA  + +    LWL +L  + IDP S QP  C  P+ ++  LSS+P    +N  + +    K++++ + EC +R+   A++  EP A LHL + FEL  ++L+++   +   A      AYDYY  AA+L +  AL H+ARL  +A    W   + + P  +   +L+LLL +A + +  A++AL  V + G+  A++   P  + +   S  S    + V++ +L NV YR+ L LR G   +   + LAV    IA    H  +SLELGL++V+ A S +E R G+D+L  L N      T + E L+ACFRLGRW   GLPH+F                  GR   +N     A   +K AAE   +EAMV YG L  +K       +G+  +   WI KAG CP A+ A A L   +A  ++  + +     SFGS         T+G      XXXXX      P   GSK S +R         L +SSS   AL  + +     L +AE + Q + Q  D                            +P +  +P P YK   F      IW  CDP+   A L+++AR LL K  E    S++   W+  RRNW  ED   VR+A  L  K+
Sbjct:    3 VPWPLRMLVTDALQIPLEVAHLWLSKLKNRTIDPDSLQPPFCPYPAPYN--LSSTPVSTSLNGHHPSKPPFKTEDQVLQECRLRSVVTASETAEPQAALHLAIHFELHHKHLARQQFGKHQDAVTQFCHAYDYYLAAAKLGSVPALVHVARLQSRALHFHWQYVEIS-PTPTVESVLALLLAAAFQGSVQAFQALPRVMDDGVFNALKPFEPSLDTRAAKSGRSFAEQNCVIERELFNVTYRVALDLRVGTKHLPQREDLAVALLHIAHRRRHSRSSLELGLYMVQTARSFEEARAGMDILSKLTN------TDAHEGLQACFRLGRWLYYGLPHEFACSNGRITASTQHSNRQQGRQRQENMDHDQATCLVKTAAEGGLREAMVLYGTLL-KKWAARHPDQGYLDEGNYWIKKAGTCPMAYYAKALLLIYEAESSFKPRCKMTGAESFGS--------TTSGXXXXXXXXXXXXXXXXTPSRIGSKKSKKRGEKKKLLKWLQNSSSG--ALEVIEKPNRSTL-SAETLTQDASQIEDNAMNKAIQKKFEKVYNILVDGPAALAKDFPGENLNPYPYYKAAEFMIGFGYIWADCDPSKTEAGLKEEARILLKKVTE-IPRSHDPTTWEHLRRNWRQEDMFYVRKARDLETKM 632          
The following BLAST results are available for this feature:
BLAST of Ggra1866.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IPL77.600e-6732.67Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 74..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 769..789
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 730..747
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 730..799
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 438..687
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 543..579
e-value: 42.0
score: 8.2
coord: 625..666
e-value: 0.38
score: 19.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 377..732
e-value: 1.4E-18
score: 68.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000907_piloncontigtig00000907_pilon:38838..41591 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1866.t2Ggra1866.t2Gracilaria gracilis GNS1m malemRNAtig00000907_pilon 38838..41591 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1866.t2 ID=Ggra1866.t2|Name=Ggra1866.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=918bp
MHDNDPDAHNSTTEKLARMLPSEELLHQHRFLIPDAEARSQVSLMEHTIR
MFLRKDRYSELLDTAACYQSHEVTDRILHNVAQLRNEIRAMRQENNVSRY
IPHCLNTDGAQALRCEPHIRILGLDSNHERVSKPIHQLDQRLGAIPCWGT
SPQSPPLFANEHNLSTRFRILMDVATAFTVAHQAGWYHGRLCPDMIRIMQ
LRTPQKTTSTESIESFPSAIVLHFADRQNGIGCRACEYCCSREKEVKRTN
HRESSNLNSMDFSFRHRPQSELISILPEAEDRYIFGNLVCWLYSAQCFDY
NEPNCQHNYDLLQHVPWPLRMIVTDAPDLEMPAIQLWLDQLDKKHIDPFS
DQPLCTIPSRHSSILSSSPNRVNDFNEADEAAKSKEEAIFECSIRAATAA
AKGEEPLAVLHLGLLFELRFRNLSQKFAMQAPMAAKALRDAYDYYAVAAE
LQNTSALHHIARLLYQAWYDRKATLPALSQSQILSLLLESAIRQNFGAYR
ALETVCEHGIRVAMETSSPDKNIKRLGSVSHEGSSSVVDSDLMNVMYRMG
LVLRRGDNDIHIDDKLAVGCFFIARNLGHLGASLELGLFLVERAVSLDEV
RQGIDMLQTLANWPLGGNTGSVESLEACFRLGRWCLLGLPHDFGRPDMKN
KLMAIRYLKPAAEQNHKEAMVQYGMLHERKIIPNGNTEGHDALEWISKAG
DCPSAFSALATLEWRKAVRNWNLQTRRALNTSFGSGSAPSGDDATTGETQ
QARRRKPPFFRKRGPGSKGSDQRSQSSSSSGSLTDSSSHDEALPELRRQT
ARILRTAEKMFQRSQQPNDLYPEKQYDPLPLYKLGYFYNNVKDIWGICDP
NVRAADLEQKARSLLSKAIERTSSSYEGIKWKRNRRNWILEDQAVVREAE
SLFQKLVEPVKLSGRGH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR011990TPR-like_helical_dom_sf