Ggra1865.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1865.t2
Unique NameGgra1865.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length836
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000907_piloncontigtig00000907_pilon:35736..38243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr49215
PFAMsVWA_2
Max annot lvl2836|Bacillariophyta
Evalue1.7e-20
EggNOG OGsKOG2353@1|root,KOG2353@2759|Eukaryota,2XEN6@2836|Bacillariophyta
Descriptionvon Willebrand factor type A domain
COG categoryPT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1865Ggra1865Gracilaria gracilis GNS1m malegenetig00000907_pilon 30349..38243 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1865.t2.start1Ggra1865.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000907_pilon 35736..35738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1865.t2.CDS1Ggra1865.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000907_pilon 35736..38243 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1865.t2.exon1Ggra1865.t2.exon1Gracilaria gracilis GNS1m maleexontig00000907_pilon 35736..38243 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1865.t2.stop1Ggra1865.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000907_pilon 38241..38243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1865.t2Ggra1865.t2Gracilaria gracilis GNS1m malepolypeptidetig00000907_pilon 35736..38243 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1865.t2 ID=Ggra1865.t2|Name=Ggra1865.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=836bp
MTGFFTWASLFLLFHATISVQANNAFDKLYTEKNEAARDVAAELARVLHP
SARCRASKNCNQGPCLPSDCANDAFGPNYRCSGLLLASSGESICPASCAP
EKRLLNFNTAHISFTPDSVRYETRNGKHNIRVQDRDLLRDTCALKSMRDS
LRKSFERHKLESWIYASTSSGLFLAYPGNARGRNTAHTEQCGFVPMIRPW
YVAAASGLKDVVFLLDQTSLVAADKVLTRSLESAINALEQSDYVAVLAVG
KELKTLGGVQRLQKATGDVKERLLLDLSRLQPSGGSPAIETAFSKAFDLL
QLSAADGQTSFCSKIIVLLIGNEPECFEQCGPSRSVACSCTSTIVDIVKR
KQESIGGGVSIVTFTEGDNNDAQRIARSLVCETSNPGVWSRVSSEQDHET
SLLAYTDIASLTQTRAQYTSDVYIDQNGLGEMFTIAHPVYDPDSRRLVGA
VGVDTTIGEVAKAVGDRNTAKQGVKNRWENEKRGCKARELKGCELQKLRR
RYGGMCADVLVRNGNPWTCFRAGSSLFWRSEAEQTWTDARSSCRSAASDL
AVINNSGKNQVAASISSLDGSWIGLRASRGNSLQWVNGSPLVETNLGFSS
NTSASFEKQIKTLHNVNLVDACVSTDRRGVEDNWNVVPCDAKRSAICEMP
FDSPNASQQCPTEATFDPRMIPEYKPFNKVDCDFSDPSCPVEEDEALKSA
NPICSDKSLAPRSDFDRRCCGGRSDSSGETSCGSDGLSVGLIAGVVIAAV
FLLVAFILIVLWVRKRRRKIASRKALPETGGDTSSAGNQTSSPQNPSALH
APVDDRKPLDAVDYLAMVKDSEGYKEPDLEILDMN*
back to top

spliced messenger RNA

>Ggra1865.t2 ID=Ggra1865.t2|Name=Ggra1865.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2508bp|location=Sequence derived from alignment at tig00000907_pilon:35736..38243+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGGCTTCTTCACATGGGCCTCGTTATTCCTTCTCTTCCATGCCAC
GATATCTGTTCAGGCCAATAACGCTTTCGATAAACTTTACACAGAGAAGA
ATGAAGCTGCACGCGATGTAGCAGCTGAACTGGCAAGGGTCTTACATCCC
TCCGCACGATGTCGAGCCTCCAAGAACTGTAACCAAGGGCCTTGTCTTCC
AAGCGACTGCGCCAACGATGCGTTCGGACCTAACTATCGCTGTTCCGGCT
TGCTGTTGGCTTCCAGTGGAGAATCAATCTGCCCTGCCAGTTGCGCGCCT
GAGAAAAGACTGCTGAATTTCAACACTGCTCACATCAGCTTTACACCTGA
TTCGGTACGATACGAGACACGCAACGGCAAACACAACATTCGAGTACAGG
ATCGTGATCTACTTAGAGATACCTGTGCTCTTAAATCTATGCGCGACTCT
TTGCGCAAATCATTTGAGAGGCACAAGCTCGAGAGTTGGATTTATGCGTC
CACTTCTTCAGGACTATTCCTCGCCTACCCAGGGAATGCAAGAGGACGCA
ATACGGCCCATACTGAACAATGCGGATTTGTTCCGATGATTCGTCCCTGG
TATGTCGCCGCCGCCTCCGGCTTGAAAGATGTCGTGTTTCTGTTGGACCA
GACTTCTTTGGTAGCGGCGGATAAAGTGCTCACTAGATCTCTGGAAAGTG
CAATAAATGCTCTGGAACAGAGTGATTACGTCGCTGTACTGGCAGTAGGC
AAAGAACTGAAGACCCTGGGTGGCGTCCAGAGGCTCCAGAAAGCGACAGG
CGACGTCAAGGAAAGGCTTTTATTGGATTTAAGTCGGTTACAACCATCAG
GTGGATCGCCTGCTATAGAGACTGCATTTTCGAAAGCCTTTGATCTGCTT
CAACTGTCAGCAGCTGACGGACAAACCAGTTTTTGCTCCAAGATCATTGT
GTTGTTGATAGGCAATGAGCCGGAATGTTTCGAGCAGTGCGGACCATCTC
GATCTGTGGCGTGCAGTTGTACAAGTACAATAGTGGATATCGTCAAACGC
AAACAGGAAAGCATTGGAGGCGGTGTTTCCATTGTTACATTCACAGAAGG
AGATAACAACGACGCCCAACGTATTGCCCGGTCTCTGGTGTGTGAGACAT
CAAATCCTGGGGTCTGGAGTCGTGTATCGTCCGAGCAGGATCACGAAACA
TCTCTACTTGCATACACGGATATTGCGTCTCTCACTCAAACGAGGGCACA
ATACACTTCCGATGTATACATTGACCAAAATGGATTAGGTGAAATGTTTA
CAATAGCACACCCTGTCTATGATCCGGACTCGAGACGCCTGGTCGGGGCT
GTAGGAGTTGATACCACGATTGGCGAGGTCGCCAAAGCTGTAGGGGATAG
AAATACAGCTAAACAAGGCGTCAAGAACAGATGGGAGAACGAGAAAAGGG
GTTGCAAGGCCAGAGAGTTGAAGGGTTGTGAACTGCAGAAACTCCGACGG
CGTTACGGCGGTATGTGCGCAGACGTCTTGGTTAGAAATGGAAATCCTTG
GACGTGCTTCCGAGCAGGAAGTTCACTTTTTTGGAGGTCCGAAGCAGAGC
AGACATGGACTGATGCTCGAAGCTCCTGTAGATCCGCAGCCAGTGATCTG
GCAGTTATTAACAACTCAGGAAAGAATCAAGTTGCTGCGAGCATTAGCTC
CCTCGACGGAAGTTGGATTGGATTGCGTGCTTCTCGAGGGAATTCTCTAC
AGTGGGTGAACGGCTCGCCGTTGGTGGAAACCAATCTAGGGTTCAGCAGC
AATACGAGTGCATCGTTTGAGAAACAGATCAAAACGCTTCACAATGTAAA
TCTTGTAGACGCGTGCGTTTCGACCGACCGAAGGGGGGTTGAGGACAATT
GGAACGTAGTGCCATGTGACGCCAAGCGATCCGCCATATGTGAGATGCCA
TTTGACAGTCCAAATGCAAGTCAGCAATGTCCAACTGAAGCTACTTTCGA
CCCACGGATGATACCTGAATATAAACCATTCAACAAGGTTGACTGCGATT
TCTCAGATCCATCGTGCCCTGTGGAGGAAGATGAGGCTCTCAAGAGCGCG
AACCCGATCTGTTCAGATAAGTCACTCGCCCCCAGAAGCGACTTCGATCG
ACGGTGCTGTGGAGGAAGATCAGATTCTAGTGGCGAAACCTCATGCGGAA
GCGATGGGTTATCTGTTGGCTTAATTGCGGGAGTCGTCATCGCGGCTGTT
TTTCTCTTAGTGGCCTTCATACTAATCGTTCTATGGGTGAGGAAGAGGAG
GAGGAAAATTGCGTCAAGAAAGGCCCTGCCGGAAACAGGGGGTGATACAA
GCAGTGCAGGTAATCAGACATCTTCACCGCAAAACCCCTCTGCATTACAT
GCCCCTGTGGACGACCGCAAACCTCTTGACGCTGTGGATTACCTGGCGAT
GGTCAAAGACAGTGAAGGCTACAAGGAACCAGACCTAGAGATACTGGATA
TGAATTGA
back to top

protein sequence of Ggra1865.t2

>Ggra1865.t2 ID=Ggra1865.t2|Name=Ggra1865.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=836bp
MTGFFTWASLFLLFHATISVQANNAFDKLYTEKNEAARDVAAELARVLHP
SARCRASKNCNQGPCLPSDCANDAFGPNYRCSGLLLASSGESICPASCAP
EKRLLNFNTAHISFTPDSVRYETRNGKHNIRVQDRDLLRDTCALKSMRDS
LRKSFERHKLESWIYASTSSGLFLAYPGNARGRNTAHTEQCGFVPMIRPW
YVAAASGLKDVVFLLDQTSLVAADKVLTRSLESAINALEQSDYVAVLAVG
KELKTLGGVQRLQKATGDVKERLLLDLSRLQPSGGSPAIETAFSKAFDLL
QLSAADGQTSFCSKIIVLLIGNEPECFEQCGPSRSVACSCTSTIVDIVKR
KQESIGGGVSIVTFTEGDNNDAQRIARSLVCETSNPGVWSRVSSEQDHET
SLLAYTDIASLTQTRAQYTSDVYIDQNGLGEMFTIAHPVYDPDSRRLVGA
VGVDTTIGEVAKAVGDRNTAKQGVKNRWENEKRGCKARELKGCELQKLRR
RYGGMCADVLVRNGNPWTCFRAGSSLFWRSEAEQTWTDARSSCRSAASDL
AVINNSGKNQVAASISSLDGSWIGLRASRGNSLQWVNGSPLVETNLGFSS
NTSASFEKQIKTLHNVNLVDACVSTDRRGVEDNWNVVPCDAKRSAICEMP
FDSPNASQQCPTEATFDPRMIPEYKPFNKVDCDFSDPSCPVEEDEALKSA
NPICSDKSLAPRSDFDRRCCGGRSDSSGETSCGSDGLSVGLIAGVVIAAV
FLLVAFILIVLWVRKRRRKIASRKALPETGGDTSSAGNQTSSPQNPSALH
APVDDRKPLDAVDYLAMVKDSEGYKEPDLEILDMN*
back to top

mRNA from alignment at tig00000907_pilon:35736..38243+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1865.t2 ID=Ggra1865.t2|Name=Ggra1865.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2508bp|location=Sequence derived from alignment at tig00000907_pilon:35736..38243+ (Gracilaria gracilis GNS1m male)
ATGACAGGCTTCTTCACATGGGCCTCGTTATTCCTTCTCTTCCATGCCAC GATATCTGTTCAGGCCAATAACGCTTTCGATAAACTTTACACAGAGAAGA ATGAAGCTGCACGCGATGTAGCAGCTGAACTGGCAAGGGTCTTACATCCC TCCGCACGATGTCGAGCCTCCAAGAACTGTAACCAAGGGCCTTGTCTTCC AAGCGACTGCGCCAACGATGCGTTCGGACCTAACTATCGCTGTTCCGGCT TGCTGTTGGCTTCCAGTGGAGAATCAATCTGCCCTGCCAGTTGCGCGCCT GAGAAAAGACTGCTGAATTTCAACACTGCTCACATCAGCTTTACACCTGA TTCGGTACGATACGAGACACGCAACGGCAAACACAACATTCGAGTACAGG ATCGTGATCTACTTAGAGATACCTGTGCTCTTAAATCTATGCGCGACTCT TTGCGCAAATCATTTGAGAGGCACAAGCTCGAGAGTTGGATTTATGCGTC CACTTCTTCAGGACTATTCCTCGCCTACCCAGGGAATGCAAGAGGACGCA ATACGGCCCATACTGAACAATGCGGATTTGTTCCGATGATTCGTCCCTGG TATGTCGCCGCCGCCTCCGGCTTGAAAGATGTCGTGTTTCTGTTGGACCA GACTTCTTTGGTAGCGGCGGATAAAGTGCTCACTAGATCTCTGGAAAGTG CAATAAATGCTCTGGAACAGAGTGATTACGTCGCTGTACTGGCAGTAGGC AAAGAACTGAAGACCCTGGGTGGCGTCCAGAGGCTCCAGAAAGCGACAGG CGACGTCAAGGAAAGGCTTTTATTGGATTTAAGTCGGTTACAACCATCAG GTGGATCGCCTGCTATAGAGACTGCATTTTCGAAAGCCTTTGATCTGCTT CAACTGTCAGCAGCTGACGGACAAACCAGTTTTTGCTCCAAGATCATTGT GTTGTTGATAGGCAATGAGCCGGAATGTTTCGAGCAGTGCGGACCATCTC GATCTGTGGCGTGCAGTTGTACAAGTACAATAGTGGATATCGTCAAACGC AAACAGGAAAGCATTGGAGGCGGTGTTTCCATTGTTACATTCACAGAAGG AGATAACAACGACGCCCAACGTATTGCCCGGTCTCTGGTGTGTGAGACAT CAAATCCTGGGGTCTGGAGTCGTGTATCGTCCGAGCAGGATCACGAAACA TCTCTACTTGCATACACGGATATTGCGTCTCTCACTCAAACGAGGGCACA ATACACTTCCGATGTATACATTGACCAAAATGGATTAGGTGAAATGTTTA CAATAGCACACCCTGTCTATGATCCGGACTCGAGACGCCTGGTCGGGGCT GTAGGAGTTGATACCACGATTGGCGAGGTCGCCAAAGCTGTAGGGGATAG AAATACAGCTAAACAAGGCGTCAAGAACAGATGGGAGAACGAGAAAAGGG GTTGCAAGGCCAGAGAGTTGAAGGGTTGTGAACTGCAGAAACTCCGACGG CGTTACGGCGGTATGTGCGCAGACGTCTTGGTTAGAAATGGAAATCCTTG GACGTGCTTCCGAGCAGGAAGTTCACTTTTTTGGAGGTCCGAAGCAGAGC AGACATGGACTGATGCTCGAAGCTCCTGTAGATCCGCAGCCAGTGATCTG GCAGTTATTAACAACTCAGGAAAGAATCAAGTTGCTGCGAGCATTAGCTC CCTCGACGGAAGTTGGATTGGATTGCGTGCTTCTCGAGGGAATTCTCTAC AGTGGGTGAACGGCTCGCCGTTGGTGGAAACCAATCTAGGGTTCAGCAGC AATACGAGTGCATCGTTTGAGAAACAGATCAAAACGCTTCACAATGTAAA TCTTGTAGACGCGTGCGTTTCGACCGACCGAAGGGGGGTTGAGGACAATT GGAACGTAGTGCCATGTGACGCCAAGCGATCCGCCATATGTGAGATGCCA TTTGACAGTCCAAATGCAAGTCAGCAATGTCCAACTGAAGCTACTTTCGA CCCACGGATGATACCTGAATATAAACCATTCAACAAGGTTGACTGCGATT TCTCAGATCCATCGTGCCCTGTGGAGGAAGATGAGGCTCTCAAGAGCGCG AACCCGATCTGTTCAGATAAGTCACTCGCCCCCAGAAGCGACTTCGATCG ACGGTGCTGTGGAGGAAGATCAGATTCTAGTGGCGAAACCTCATGCGGAA GCGATGGGTTATCTGTTGGCTTAATTGCGGGAGTCGTCATCGCGGCTGTT TTTCTCTTAGTGGCCTTCATACTAATCGTTCTATGGGTGAGGAAGAGGAG GAGGAAAATTGCGTCAAGAAAGGCCCTGCCGGAAACAGGGGGTGATACAA GCAGTGCAGGTAATCAGACATCTTCACCGCAAAACCCCTCTGCATTACAT GCCCCTGTGGACGACCGCAAACCTCTTGACGCTGTGGATTACCTGGCGAT GGTCAAAGACAGTGAAGGCTACAAGGAACCAGACCTAGAGATACTGGATA TGAATTGA
back to top

Coding sequence (CDS) from alignment at tig00000907_pilon:35736..38243+

>Ggra1865.t2 ID=Ggra1865.t2|Name=Ggra1865.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2508bp|location=Sequence derived from alignment at tig00000907_pilon:35736..38243+ (Gracilaria gracilis GNS1m male)
ATGACAGGCTTCTTCACATGGGCCTCGTTATTCCTTCTCTTCCATGCCAC
GATATCTGTTCAGGCCAATAACGCTTTCGATAAACTTTACACAGAGAAGA
ATGAAGCTGCACGCGATGTAGCAGCTGAACTGGCAAGGGTCTTACATCCC
TCCGCACGATGTCGAGCCTCCAAGAACTGTAACCAAGGGCCTTGTCTTCC
AAGCGACTGCGCCAACGATGCGTTCGGACCTAACTATCGCTGTTCCGGCT
TGCTGTTGGCTTCCAGTGGAGAATCAATCTGCCCTGCCAGTTGCGCGCCT
GAGAAAAGACTGCTGAATTTCAACACTGCTCACATCAGCTTTACACCTGA
TTCGGTACGATACGAGACACGCAACGGCAAACACAACATTCGAGTACAGG
ATCGTGATCTACTTAGAGATACCTGTGCTCTTAAATCTATGCGCGACTCT
TTGCGCAAATCATTTGAGAGGCACAAGCTCGAGAGTTGGATTTATGCGTC
CACTTCTTCAGGACTATTCCTCGCCTACCCAGGGAATGCAAGAGGACGCA
ATACGGCCCATACTGAACAATGCGGATTTGTTCCGATGATTCGTCCCTGG
TATGTCGCCGCCGCCTCCGGCTTGAAAGATGTCGTGTTTCTGTTGGACCA
GACTTCTTTGGTAGCGGCGGATAAAGTGCTCACTAGATCTCTGGAAAGTG
CAATAAATGCTCTGGAACAGAGTGATTACGTCGCTGTACTGGCAGTAGGC
AAAGAACTGAAGACCCTGGGTGGCGTCCAGAGGCTCCAGAAAGCGACAGG
CGACGTCAAGGAAAGGCTTTTATTGGATTTAAGTCGGTTACAACCATCAG
GTGGATCGCCTGCTATAGAGACTGCATTTTCGAAAGCCTTTGATCTGCTT
CAACTGTCAGCAGCTGACGGACAAACCAGTTTTTGCTCCAAGATCATTGT
GTTGTTGATAGGCAATGAGCCGGAATGTTTCGAGCAGTGCGGACCATCTC
GATCTGTGGCGTGCAGTTGTACAAGTACAATAGTGGATATCGTCAAACGC
AAACAGGAAAGCATTGGAGGCGGTGTTTCCATTGTTACATTCACAGAAGG
AGATAACAACGACGCCCAACGTATTGCCCGGTCTCTGGTGTGTGAGACAT
CAAATCCTGGGGTCTGGAGTCGTGTATCGTCCGAGCAGGATCACGAAACA
TCTCTACTTGCATACACGGATATTGCGTCTCTCACTCAAACGAGGGCACA
ATACACTTCCGATGTATACATTGACCAAAATGGATTAGGTGAAATGTTTA
CAATAGCACACCCTGTCTATGATCCGGACTCGAGACGCCTGGTCGGGGCT
GTAGGAGTTGATACCACGATTGGCGAGGTCGCCAAAGCTGTAGGGGATAG
AAATACAGCTAAACAAGGCGTCAAGAACAGATGGGAGAACGAGAAAAGGG
GTTGCAAGGCCAGAGAGTTGAAGGGTTGTGAACTGCAGAAACTCCGACGG
CGTTACGGCGGTATGTGCGCAGACGTCTTGGTTAGAAATGGAAATCCTTG
GACGTGCTTCCGAGCAGGAAGTTCACTTTTTTGGAGGTCCGAAGCAGAGC
AGACATGGACTGATGCTCGAAGCTCCTGTAGATCCGCAGCCAGTGATCTG
GCAGTTATTAACAACTCAGGAAAGAATCAAGTTGCTGCGAGCATTAGCTC
CCTCGACGGAAGTTGGATTGGATTGCGTGCTTCTCGAGGGAATTCTCTAC
AGTGGGTGAACGGCTCGCCGTTGGTGGAAACCAATCTAGGGTTCAGCAGC
AATACGAGTGCATCGTTTGAGAAACAGATCAAAACGCTTCACAATGTAAA
TCTTGTAGACGCGTGCGTTTCGACCGACCGAAGGGGGGTTGAGGACAATT
GGAACGTAGTGCCATGTGACGCCAAGCGATCCGCCATATGTGAGATGCCA
TTTGACAGTCCAAATGCAAGTCAGCAATGTCCAACTGAAGCTACTTTCGA
CCCACGGATGATACCTGAATATAAACCATTCAACAAGGTTGACTGCGATT
TCTCAGATCCATCGTGCCCTGTGGAGGAAGATGAGGCTCTCAAGAGCGCG
AACCCGATCTGTTCAGATAAGTCACTCGCCCCCAGAAGCGACTTCGATCG
ACGGTGCTGTGGAGGAAGATCAGATTCTAGTGGCGAAACCTCATGCGGAA
GCGATGGGTTATCTGTTGGCTTAATTGCGGGAGTCGTCATCGCGGCTGTT
TTTCTCTTAGTGGCCTTCATACTAATCGTTCTATGGGTGAGGAAGAGGAG
GAGGAAAATTGCGTCAAGAAAGGCCCTGCCGGAAACAGGGGGTGATACAA
GCAGTGCAGGTAATCAGACATCTTCACCGCAAAACCCCTCTGCATTACAT
GCCCCTGTGGACGACCGCAAACCTCTTGACGCTGTGGATTACCTGGCGAT
GGTCAAAGACAGTGAAGGCTACAAGGAACCAGACCTAGAGATACTGGATA
TGAATTGA
back to top