Ggra1864.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1864.t1
Unique Name	Ggra1864.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	492

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000907_pilon	contig	tig00000907_pilon:27754..29229 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	30611.ENSOGAP00000006381
Preferred name	CDC20B
PFAMs	ANAPC4_WD40,WD40
Max annot lvl	33208\|Metazoa
Evalue	8.45e-06
EggNOG OGs	COG2319@1\|root,KOG0305@2759\|Eukaryota,38DF9@33154\|Opisthokonta,3BKC8@33208\|Metazoa,3D32I@33213\|Bilateria,480AU@7711\|Chordata,48YQG@7742\|Vertebrata,3J4DI@40674\|Mammalia,35K9K@314146\|Euarchontoglires,4MIFE@9443\|Primates
Description	Cell division cycle
COG category	DO

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1864	Ggra1864	Gracilaria gracilis GNS1m male	gene	tig00000907_pilon 27754..29229 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1864.t1.start1	Ggra1864.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000907_pilon 27754..27756 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1864.t1.CDS1	Ggra1864.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000907_pilon 27754..29229 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1864.t1.exon1	Ggra1864.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000907_pilon 27754..29229 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1864.t1.stop1	Ggra1864.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000907_pilon 29227..29229 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1864.t1	Ggra1864.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000907_pilon 27754..29229 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000907_pilon:27754..29229+
coding sequence from alignment at tig00000907_pilon:27754..29229+

mRNA sequence

>Ggra1864.t1 ID=Ggra1864.t1|Name=Ggra1864.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=492bp
MEEAYRTKILNTIEALECVKEAVKLAAPYVGRNGREIWFQLYGRLIERKE
VYRIGEYLKEITLHAEKPWVRPGARYLSPSGGPLRGIRNMRGGAVTCAWF
GTDGSVFIIHARHVAEVKVWRVYGDERWKCIWTIETSEVVFDCTVSDNGS
KLSIYLSNGSVEVWDVMQKKRLKCEKRLSHGKGAGVFSADGNLLALRQKR
KNIAIWRTDYEKMEPVCQLRNKSRVRGVCWSGDGRSVAVACGNGFFFLWN
VNSRSMMNSFPVGKTKVWIHMAWSSKNMIATSYCKETCVRDVTGESVKLV
FSTSERCFSLKWSDDGLRLATGGALGMTIWKADEASQMKKKKYGNFKSIY
EVRWSRDGKRLAAICCLGAVRVVQVSPTLEYGNSKEHWRFVRWCESGTML
SSLCDDGLGLWSSNGKREAKGRLLCAENGKNRRGHAVDLAWAAEGEVLAA
VFEHEVQLWKTSLHKQELISVLSAPCGRKLCTAALNVDVRT*

spliced messenger RNA

>Ggra1864.t1 ID=Ggra1864.t1|Name=Ggra1864.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1476bp|location=Sequence derived from alignment at tig00000907_pilon:27754..29229+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGAAGCCTATAGGACAAAGATACTGAACACAATTGAAGCCTTGGA
GTGTGTCAAAGAGGCGGTAAAACTAGCAGCTCCGTATGTGGGTCGCAACG
GAAGGGAGATATGGTTCCAGCTTTATGGGCGGTTGATAGAAAGAAAAGAA
GTGTATAGAATCGGTGAGTATTTGAAAGAAATCACGTTGCATGCTGAGAA
ACCATGGGTGAGGCCGGGTGCACGATATCTTTCACCGTCTGGCGGCCCTC
TGAGGGGCATTCGGAACATGCGTGGGGGTGCAGTGACATGTGCATGGTTT
GGGACAGATGGTTCGGTTTTCATTATTCATGCACGACATGTCGCCGAAGT
CAAGGTGTGGAGAGTATATGGTGACGAACGATGGAAATGCATATGGACTA
TAGAAACCTCGGAAGTAGTCTTCGATTGCACGGTAAGTGACAACGGGAGC
AAGTTGAGCATATACTTGTCCAACGGCAGTGTGGAAGTATGGGATGTTAT
GCAAAAGAAGCGATTGAAGTGTGAGAAGCGTTTGTCGCATGGAAAGGGGG
CTGGAGTGTTTTCTGCTGATGGAAATCTATTGGCATTACGTCAAAAGCGG
AAGAACATTGCAATCTGGAGGACAGACTATGAGAAAATGGAACCAGTTTG
TCAGCTAAGAAATAAGAGTCGAGTGAGAGGTGTGTGTTGGTCTGGCGACG
GAAGGTCGGTGGCTGTTGCATGTGGCAATGGATTTTTTTTCTTATGGAAC
GTAAACAGCAGGTCCATGATGAATTCCTTTCCTGTGGGGAAAACGAAAGT
ATGGATACACATGGCATGGTCGAGCAAAAACATGATAGCGACATCCTATT
GTAAAGAAACATGTGTTCGGGACGTGACGGGTGAGAGTGTGAAGCTAGTG
TTCAGCACGAGCGAACGATGCTTTTCGTTGAAGTGGTCAGACGATGGACT
TCGGTTAGCGACCGGGGGGGCTTTGGGAATGACTATCTGGAAAGCTGACG
AAGCCAGCCAGATGAAGAAGAAAAAGTATGGGAACTTTAAAAGTATTTAT
GAAGTGAGATGGTCAAGAGATGGGAAGAGACTGGCCGCTATCTGCTGTTT
GGGTGCGGTGCGAGTAGTTCAAGTATCTCCAACACTAGAATACGGGAACA
GCAAGGAGCATTGGAGATTTGTGCGGTGGTGCGAAAGCGGGACAATGCTT
TCAAGTCTTTGTGATGATGGCCTTGGTTTATGGAGCAGCAATGGAAAGCG
CGAGGCGAAGGGAAGGCTTCTTTGCGCAGAGAATGGAAAGAATAGGCGAG
GTCACGCTGTGGACTTGGCATGGGCAGCAGAAGGAGAAGTGCTGGCTGCC
GTTTTCGAACATGAAGTACAGCTATGGAAAACATCGCTGCACAAACAGGA
GCTTATTTCTGTGTTGTCGGCGCCTTGCGGCCGAAAGTTGTGCACAGCAG
CACTGAATGTGGACGTTCGAACTTAG

protein sequence of Ggra1864.t1

>Ggra1864.t1 ID=Ggra1864.t1|Name=Ggra1864.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=492bp
MEEAYRTKILNTIEALECVKEAVKLAAPYVGRNGREIWFQLYGRLIERKE
VYRIGEYLKEITLHAEKPWVRPGARYLSPSGGPLRGIRNMRGGAVTCAWF
GTDGSVFIIHARHVAEVKVWRVYGDERWKCIWTIETSEVVFDCTVSDNGS
KLSIYLSNGSVEVWDVMQKKRLKCEKRLSHGKGAGVFSADGNLLALRQKR
KNIAIWRTDYEKMEPVCQLRNKSRVRGVCWSGDGRSVAVACGNGFFFLWN
VNSRSMMNSFPVGKTKVWIHMAWSSKNMIATSYCKETCVRDVTGESVKLV
FSTSERCFSLKWSDDGLRLATGGALGMTIWKADEASQMKKKKYGNFKSIY
EVRWSRDGKRLAAICCLGAVRVVQVSPTLEYGNSKEHWRFVRWCESGTML
SSLCDDGLGLWSSNGKREAKGRLLCAENGKNRRGHAVDLAWAAEGEVLAA
VFEHEVQLWKTSLHKQELISVLSAPCGRKLCTAALNVDVRT*

mRNA from alignment at tig00000907_pilon:27754..29229+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1864.t1 ID=Ggra1864.t1|Name=Ggra1864.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1476bp|location=Sequence derived from alignment at tig00000907_pilon:27754..29229+ (Gracilaria gracilis GNS1m male)
ATGGAGGAAGCCTATAGGACAAAGATACTGAACACAATTGAAGCCTTGGA
GTGTGTCAAAGAGGCGGTAAAACTAGCAGCTCCGTATGTGGGTCGCAACG
GAAGGGAGATATGGTTCCAGCTTTATGGGCGGTTGATAGAAAGAAAAGAA
GTGTATAGAATCGGTGAGTATTTGAAAGAAATCACGTTGCATGCTGAGAA
ACCATGGGTGAGGCCGGGTGCACGATATCTTTCACCGTCTGGCGGCCCTC
TGAGGGGCATTCGGAACATGCGTGGGGGTGCAGTGACATGTGCATGGTTT
GGGACAGATGGTTCGGTTTTCATTATTCATGCACGACATGTCGCCGAAGT
CAAGGTGTGGAGAGTATATGGTGACGAACGATGGAAATGCATATGGACTA
TAGAAACCTCGGAAGTAGTCTTCGATTGCACGGTAAGTGACAACGGGAGC
AAGTTGAGCATATACTTGTCCAACGGCAGTGTGGAAGTATGGGATGTTAT
GCAAAAGAAGCGATTGAAGTGTGAGAAGCGTTTGTCGCATGGAAAGGGGG
CTGGAGTGTTTTCTGCTGATGGAAATCTATTGGCATTACGTCAAAAGCGG
AAGAACATTGCAATCTGGAGGACAGACTATGAGAAAATGGAACCAGTTTG
TCAGCTAAGAAATAAGAGTCGAGTGAGAGGTGTGTGTTGGTCTGGCGACG
GAAGGTCGGTGGCTGTTGCATGTGGCAATGGATTTTTTTTCTTATGGAAC
GTAAACAGCAGGTCCATGATGAATTCCTTTCCTGTGGGGAAAACGAAAGT
ATGGATACACATGGCATGGTCGAGCAAAAACATGATAGCGACATCCTATT
GTAAAGAAACATGTGTTCGGGACGTGACGGGTGAGAGTGTGAAGCTAGTG
TTCAGCACGAGCGAACGATGCTTTTCGTTGAAGTGGTCAGACGATGGACT
TCGGTTAGCGACCGGGGGGGCTTTGGGAATGACTATCTGGAAAGCTGACG
AAGCCAGCCAGATGAAGAAGAAAAAGTATGGGAACTTTAAAAGTATTTAT
GAAGTGAGATGGTCAAGAGATGGGAAGAGACTGGCCGCTATCTGCTGTTT
GGGTGCGGTGCGAGTAGTTCAAGTATCTCCAACACTAGAATACGGGAACA
GCAAGGAGCATTGGAGATTTGTGCGGTGGTGCGAAAGCGGGACAATGCTT
TCAAGTCTTTGTGATGATGGCCTTGGTTTATGGAGCAGCAATGGAAAGCG
CGAGGCGAAGGGAAGGCTTCTTTGCGCAGAGAATGGAAAGAATAGGCGAG
GTCACGCTGTGGACTTGGCATGGGCAGCAGAAGGAGAAGTGCTGGCTGCC
GTTTTCGAACATGAAGTACAGCTATGGAAAACATCGCTGCACAAACAGGA
GCTTATTTCTGTGTTGTCGGCGCCTTGCGGCCGAAAGTTGTGCACAGCAG
CACTGAATGTGGACGTTCGAACTTAG

Coding sequence (CDS) from alignment at tig00000907_pilon:27754..29229+

>Ggra1864.t1 ID=Ggra1864.t1|Name=Ggra1864.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1476bp|location=Sequence derived from alignment at tig00000907_pilon:27754..29229+ (Gracilaria gracilis GNS1m male)
ATGGAGGAAGCCTATAGGACAAAGATACTGAACACAATTGAAGCCTTGGA
GTGTGTCAAAGAGGCGGTAAAACTAGCAGCTCCGTATGTGGGTCGCAACG
GAAGGGAGATATGGTTCCAGCTTTATGGGCGGTTGATAGAAAGAAAAGAA
GTGTATAGAATCGGTGAGTATTTGAAAGAAATCACGTTGCATGCTGAGAA
ACCATGGGTGAGGCCGGGTGCACGATATCTTTCACCGTCTGGCGGCCCTC
TGAGGGGCATTCGGAACATGCGTGGGGGTGCAGTGACATGTGCATGGTTT
GGGACAGATGGTTCGGTTTTCATTATTCATGCACGACATGTCGCCGAAGT
CAAGGTGTGGAGAGTATATGGTGACGAACGATGGAAATGCATATGGACTA
TAGAAACCTCGGAAGTAGTCTTCGATTGCACGGTAAGTGACAACGGGAGC
AAGTTGAGCATATACTTGTCCAACGGCAGTGTGGAAGTATGGGATGTTAT
GCAAAAGAAGCGATTGAAGTGTGAGAAGCGTTTGTCGCATGGAAAGGGGG
CTGGAGTGTTTTCTGCTGATGGAAATCTATTGGCATTACGTCAAAAGCGG
AAGAACATTGCAATCTGGAGGACAGACTATGAGAAAATGGAACCAGTTTG
TCAGCTAAGAAATAAGAGTCGAGTGAGAGGTGTGTGTTGGTCTGGCGACG
GAAGGTCGGTGGCTGTTGCATGTGGCAATGGATTTTTTTTCTTATGGAAC
GTAAACAGCAGGTCCATGATGAATTCCTTTCCTGTGGGGAAAACGAAAGT
ATGGATACACATGGCATGGTCGAGCAAAAACATGATAGCGACATCCTATT
GTAAAGAAACATGTGTTCGGGACGTGACGGGTGAGAGTGTGAAGCTAGTG
TTCAGCACGAGCGAACGATGCTTTTCGTTGAAGTGGTCAGACGATGGACT
TCGGTTAGCGACCGGGGGGGCTTTGGGAATGACTATCTGGAAAGCTGACG
AAGCCAGCCAGATGAAGAAGAAAAAGTATGGGAACTTTAAAAGTATTTAT
GAAGTGAGATGGTCAAGAGATGGGAAGAGACTGGCCGCTATCTGCTGTTT
GGGTGCGGTGCGAGTAGTTCAAGTATCTCCAACACTAGAATACGGGAACA
GCAAGGAGCATTGGAGATTTGTGCGGTGGTGCGAAAGCGGGACAATGCTT
TCAAGTCTTTGTGATGATGGCCTTGGTTTATGGAGCAGCAATGGAAAGCG
CGAGGCGAAGGGAAGGCTTCTTTGCGCAGAGAATGGAAAGAATAGGCGAG
GTCACGCTGTGGACTTGGCATGGGCAGCAGAAGGAGAAGTGCTGGCTGCC
GTTTTCGAACATGAAGTACAGCTATGGAAAACATCGCTGCACAAACAGGA
GCTTATTTCTGTGTTGTCGGCGCCTTGCGGCCGAAAGTTGTGCACAGCAG
CACTGAATGTGGACGTTCGAACTTAG