Ggra1867.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1867.t1
Unique NameGgra1867.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length778
Homology
BLAST of Ggra1867.t1 vs. uniprot
Match: A0A2V3IYU1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYU1_9FLOR)

HSP 1 Score: 976 bits (2524), Expect = 0.000e+0
Identity = 557/780 (71.41%), Postives = 615/780 (78.85%), Query Frame = 0
Query:    1 MRGSTANMPSEEALREMMRAAAXXXXXXXXXXXXXXXXVTSSEATRYVRHSTGRSSANRRQSISMLPPTLGGEQFRQGAPLPPVEGGVRWKKIQAVAREIAAKWTHPPGSSQYETPTLHNVRAILYMNKSLITQSFVSHVSGVSQGSLSHYVRGLFRGNQKNVDDRLAIFVEKFAEGHLDKFLEEARSGTRPIGRPAFYDSLNLTTVAPHRSTQST---PSAQPVATNVTDSRPPVPXXXXXQLQPAPWXXXXXXXXXXSLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGKRPRPVFPPIPEETKEPTSVLAVEKAYHALVAPKWTGEFAEAEPLLIPIELYVTIGENTLHMYTQWDVNERQLAPENVADYIRRARKLPEEFVLPIAFQIRRNLFEAGVICPPPPDISEAENRRLIKIVVELKDGDTVHVLRDEFEWDLGYGSVNSPELFAQLLCTDANISPKHVPEVSRALRKQLVRAHAIAFGDEETRKLAQRDLAEDDPLREKLPPVGSALIKCTAEDIRVRDREENELAIRNLFVRPLLDSIPLESERRKAERVKKAAEERLRHELEIVRRIELAELAKRNADIEQARKEVEEEAVQVYQHRNLDFRPYLKLRVARDESPSLWMPAAFDRRRRKQLTFPMTQPSRKNTGHNIVFSRIAKRRRPGIRKGHDEKTLGRASEKSEIHVAKKQKTEPTIYAGKTLSSSDNKEVMLKLRVRSPDNAAQKKTPVPKRRR 777
            MRG T N PSEEALREMMRA  XXXXXXXXXXXXXXXX  +SEATRYVRHSTGRSSANRRQSISMLPPTLGGEQFRQGAPL PVEGGVRW+KIQAVAREIAAKWTHPPGSSQYET TLH+VRAILYMNKSLITQSFVSHVSGVSQGSLSHYVRGLFRGNQKNVDDRLA+FVEKFAEG  DKFLEEARSGTRPIGRPAFYDSLNL TVA HRS Q +   P+A PV    TDS     XXXXX L     XXXXXXXXXX L                                                                      SGKRPRPVFPPIPEETKEPTSVLAVEKAYHAL APKWTGEF+ AEPLLIPIEL+VT+G  TLH Y QWDVNERQL+PE VAD+IRRAR LPE+FV P+A QIRR+L++AGV+CPPPPD+ EAENRRLIKIVVELKDGDTV+VLRDEFEWDLG GS+NSPELFAQLLCTDANI  KH   V+R LR QLVRAHAIA+GDEETRKLA+  +A DD LR KLP VGS+++KCT EDIRV+DREENELAIRN+FV+PLLD+IP E+ERRK ERV+KAAEE+LR ELE +RR+ELAELAKRNA++EQARK+VEEEA +VYQ RNLDFRPYLKLRVAR ESPSLWMPAAFDRRRRKQLTFPMTQPSRK TGH+  FSRI+KRRR G+RK  ++++ GR+  K+E H  KKQKTEP   AGK++S  + K VM+++R++ P    Q K P PK+RR
Sbjct:    1 MRGPTVNAPSEEALREMMRAXXXXXXXXXXXXXXXXXXXXTSEATRYVRHSTGRSSANRRQSISMLPPTLGGEQFRQGAPLQPVEGGVRWQKIQAVAREIAAKWTHPPGSSQYETDTLHHVRAILYMNKSLITQSFVSHVSGVSQGSLSHYVRGLFRGNQKNVDDRLAVFVEKFAEGQYDKFLEEARSGTRPIGRPAFYDSLNLATVAAHRSNQGSLPPPNAPPV----TDSXXXXXXXXXXXLXXXXXXXXXXXXXXXKL----TTSPTSRSPAKSGLSDGEKGTDEEKPNGLEKSNDQEQTSAGRNKKLEEKRLSERARRAQQRAQKQRSGKRPRPVFPPIPEETKEPTSVLAVEKAYHALAAPKWTGEFSNAEPLLIPIELFVTVGSRTLHTYAQWDVNERQLSPEKVADHIRRARGLPEDFVKPVAHQIRRSLYDAGVVCPPPPDLPEAENRRLIKIVVELKDGDTVNVLRDEFEWDLGAGSLNSPELFAQLLCTDANIPQKHAAAVARTLRAQLVRAHAIAYGDEETRKLAENGMAADDTLRVKLPSVGSSMVKCTVEDIRVKDREENELAIRNVFVKPLLDNIPDEAERRKEERVQKAAEEKLRRELEAIRRVELAELAKRNAEVEQARKQVEEEATKVYQTRNLDFRPYLKLRVARGESPSLWMPAAFDRRRRKQLTFPMTQPSRKTTGHSFTFSRISKRRRSGVRKDPEDRSTGRSQPKTEGHPVKKQKTEPMPVAGKSISPEEYKRVMIRIRLKDP--VTQNKAPAPKKRR 770          
BLAST of Ggra1867.t1 vs. uniprot
Match: R7QG43 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG43_CHOCR)

HSP 1 Score: 243 bits (619), Expect = 8.410e-70
Identity = 152/354 (42.94%), Postives = 210/354 (59.32%), Query Frame = 0
Query:  429 QIRRNLFEAGVIC--PPPPDISEAENRRLIKIVVELKDGDTVHVLRDEFEWDLGYGSVNSPELFAQLLCTDANISPKHVPEVSRALRKQLVRAHAIAFGDEETRKLAQRDLAEDDPLREKLPPVGSALIKCTAEDIRVRDREENELAIRNLFVRPLLDSIPLESERRKAERVKKAAEERLRHELEIVRRIELAELAKRNADIEQARKEVEEEAVQVYQHRNLDFRPYLKLRVARDESPSLWMPAAFDRRRRKQLTFPMTQPSRKNTGHNIVFSRIAKRRRPGIRKGHDEKTLGRASEKSEIHVAKKQKTEPTIYAG---KTLSSSDNKEVMLKLRVRSPDNAAQKKTPVPKRRR 777
            QIRR LF AG++C  PP P  +  ENRRLI+I VEL  G     L DEFEWDLG GS+NSPELFA  LC+DA I  KH   V+RA+R++LV AHAIA+GDEET+++A   L EDDPLR  LP V S   +    D     RE NE  I + ++ PL+D++  ESERR  E  +   +ER R E E  R +E  + A+R A IE++  EVE+ A+++ + R LDFRPYL L++AR E    W PA FDR+RR+Q +FPMT  SR +T       R A++RR   R+    ++  + S  +   V +  +   +   G   + + +  +  V ++LRVR     + +    PK+RR
Sbjct:    2 QIRRALFSAGIVCAAPPAPPGANEENRRLIRIDVELGGGPGSQNLCDEFEWDLGIGSMNSPELFAHCLCSDAGIPQKHAATVARAIREKLVLAHAIAYGDEETKRMALSVLPEDDPLRNPLPKVFSVFSRDV--DHSAASREANEAEINDTYIAPLVDAVVAESERRSTECKRNMEDERKRKEFEATRAVEEVDEAERQAKIEKSLLEVEQAAIELQKERGLDFRPYLALKIARGERLGTWTPAVFDRKRRRQTSFPMTAVSRLHTAVIPAGPRAARKRRSTHRRDRRSESRSQLSTSATTPVKRPAEAMESDVKGELKRVVVNVKDLAVCVRLRVRPARITSNRNGSNPKKRR 353          
BLAST of Ggra1867.t1 vs. uniprot
Match: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A-like isoform X1 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6EDD9B (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A-like isoform X1 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6EDD9B)

HSP 1 Score: 67.0 bits (162), Expect = 7.460e-8
Identity = 61/220 (27.73%), Postives = 102/220 (46.36%), Query Frame = 0
Query:  363 PKWTGEFAEAEPLLIPIELYVTIGENTLHMYTQWDVNERQLAPENVADYIRRARKLPEEFVLPIAFQIRRNLFEAGVICPPPPDISE--AENRRLIKIVVELKDGDTVHVLRDEFEWDLGYGSVNSPELFAQLLCTDANISPKHVPEVSRALRKQLV---RAHAIAFGDEETRKLAQRDLAEDDPLREKLPPVGSALIKCTAEDIRVRDREENELAIRNL 577
            P  T E A    +L+PI L + I  + L     W+ NE  + PE  A+ +     LP    +P   Q  R   EA     P  ++ E  A+ R ++K+ + + +   V    D+FEWD+     NSPELFA  LC++  +  + V  ++ ++R QL    R +A +     T ++  R+ AE D     L  +  A +     + ++RD++ N   +R L
Sbjct:  273 PSVTHENASQSEVLVPIRLDMEIEGHKLRDTFTWNKNESLITPEQFAEVLCDDLDLPPLSFVPAISQSIRQQIEAF----PTDNLLEDQADQRVILKLNIHVGNISLV----DQFEWDMSEKE-NSPELFANKLCSELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPTVEIPFRNQAEADQWCPFLETLTDAEM-----EKKIRDQDRNTRRMRRL 478          
The following BLAST results are available for this feature:
BLAST of Ggra1867.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IYU10.000e+071.41SWI/SNF-related matrix-associated actin-dependent ... [more]
R7QG438.410e-7042.94Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A-like isoform X1 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6EDD9B7.460e-827.73SWI/SNF-related matrix-associated actin-dependent ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 618..641
NoneNo IPR availableCOILSCoilCoilcoord: 305..327
NoneNo IPR availableCOILSCoilCoilcoord: 592..612
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 302..322
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 728..777
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..345
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..263
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 276..293
NoneNo IPR availablePANTHERPTHR10019SNF5coord: 279..639
NoneNo IPR availablePANTHERPTHR10019:SF5SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY B MEMBER 1coord: 279..639
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..777
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 30..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 20..29
IPR006939SNF5/SMARCB1/INI1PFAMPF04855SNF5coord: 452..519
e-value: 7.5E-8
score: 32.4
IPR010982Lambda repressor-like, DNA-binding domain superfamilyGENE3D1.10.260.40coord: 119..174
e-value: 1.3E-5
score: 26.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000907_piloncontigtig00000907_pilon:108446..110779 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1867.t1Ggra1867.t1Gracilaria gracilis GNS1m malemRNAtig00000907_pilon 108446..110779 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1867.t1 ID=Ggra1867.t1|Name=Ggra1867.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=778bp
MRGSTANMPSEEALREMMRAAAATASAAAGDASVAAAAVTSSEATRYVRH
STGRSSANRRQSISMLPPTLGGEQFRQGAPLPPVEGGVRWKKIQAVAREI
AAKWTHPPGSSQYETPTLHNVRAILYMNKSLITQSFVSHVSGVSQGSLSH
YVRGLFRGNQKNVDDRLAIFVEKFAEGHLDKFLEEARSGTRPIGRPAFYD
SLNLTTVAPHRSTQSTPSAQPVATNVTDSRPPVPPPPPPQLQPAPWTRPP
PPPPPPSLPPSTSVSPTSKPAKTGAPDADKVADADKSTDQEKPSDQDQAT
PTGKLRRAEEKRLSERARRAQQRAQKQRSGKRPRPVFPPIPEETKEPTSV
LAVEKAYHALVAPKWTGEFAEAEPLLIPIELYVTIGENTLHMYTQWDVNE
RQLAPENVADYIRRARKLPEEFVLPIAFQIRRNLFEAGVICPPPPDISEA
ENRRLIKIVVELKDGDTVHVLRDEFEWDLGYGSVNSPELFAQLLCTDANI
SPKHVPEVSRALRKQLVRAHAIAFGDEETRKLAQRDLAEDDPLREKLPPV
GSALIKCTAEDIRVRDREENELAIRNLFVRPLLDSIPLESERRKAERVKK
AAEERLRHELEIVRRIELAELAKRNADIEQARKEVEEEAVQVYQHRNLDF
RPYLKLRVARDESPSLWMPAAFDRRRRKQLTFPMTQPSRKNTGHNIVFSR
IAKRRRPGIRKGHDEKTLGRASEKSEIHVAKKQKTEPTIYAGKTLSSSDN
KEVMLKLRVRSPDNAAQKKTPVPKRRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006939SNF5
IPR010982Lambda_DNA-bd_dom_sf