Ggra1868.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1868.t2
Unique NameGgra1868.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length193
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000907_piloncontigtig00000907_pilon:112479..113057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1868Ggra1868Gracilaria gracilis GNS1m malegenetig00000907_pilon 111378..113057 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1868.t2.start1Ggra1868.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000907_pilon 112479..112481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1868.t2.CDS1Ggra1868.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000907_pilon 112479..113057 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1868.t2.exon1Ggra1868.t2.exon1Gracilaria gracilis GNS1m maleexontig00000907_pilon 112479..113057 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1868.t2.stop1Ggra1868.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000907_pilon 113055..113057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1868.t2Ggra1868.t2Gracilaria gracilis GNS1m malepolypeptidetig00000907_pilon 112479..113057 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1868.t2 ID=Ggra1868.t2|Name=Ggra1868.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=193bp
MGVGENSSSSLLSVSLTFTPGVSPAMTYSTIQVKRSLALLTGVKARWIVV
RRAHGVTFQLNESEPEQVPLVFYISTHTKWASLYASRIKNTISSGRLIAN
SFENVTVASVEEAVKLNVTLPDVAPEVPDGLDNRSSDGQGGINMQLFFKA
MMVIFSIAVLVSVAIIAYSFEMWRVRRRRQRESEEAGLATEV*
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spliced messenger RNA

>Ggra1868.t2 ID=Ggra1868.t2|Name=Ggra1868.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=579bp|location=Sequence derived from alignment at tig00000907_pilon:112479..113057+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGTGGGTGAGAACTCAAGCTCGTCTCTGCTGTCGGTTTCGTTGAC
ATTCACACCTGGTGTATCGCCGGCTATGACCTATTCTACAATCCAAGTCA
AACGGTCACTAGCACTACTAACGGGAGTGAAGGCGCGTTGGATTGTGGTA
CGACGCGCGCATGGAGTGACGTTTCAGCTGAATGAATCAGAGCCAGAACA
GGTTCCGTTGGTATTTTACATTTCCACGCATACAAAGTGGGCGAGTTTGT
ACGCGTCGCGCATCAAGAATACGATCTCAAGTGGGAGACTTATTGCGAAC
AGTTTTGAGAATGTGACAGTGGCATCTGTGGAGGAGGCAGTGAAGCTGAA
TGTGACGCTGCCCGACGTTGCTCCGGAGGTGCCTGACGGGCTTGACAACA
GAAGTTCAGATGGACAGGGGGGCATTAACATGCAGCTGTTTTTCAAGGCA
ATGATGGTAATATTCAGTATCGCAGTGCTTGTGTCGGTGGCTATCATTGC
GTACAGCTTCGAAATGTGGCGGGTTCGTCGAAGGCGGCAACGGGAGTCGG
AGGAAGCCGGGTTGGCGACAGAAGTGTGA
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protein sequence of Ggra1868.t2

>Ggra1868.t2 ID=Ggra1868.t2|Name=Ggra1868.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=193bp
MGVGENSSSSLLSVSLTFTPGVSPAMTYSTIQVKRSLALLTGVKARWIVV
RRAHGVTFQLNESEPEQVPLVFYISTHTKWASLYASRIKNTISSGRLIAN
SFENVTVASVEEAVKLNVTLPDVAPEVPDGLDNRSSDGQGGINMQLFFKA
MMVIFSIAVLVSVAIIAYSFEMWRVRRRRQRESEEAGLATEV*
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mRNA from alignment at tig00000907_pilon:112479..113057+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1868.t2 ID=Ggra1868.t2|Name=Ggra1868.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=579bp|location=Sequence derived from alignment at tig00000907_pilon:112479..113057+ (Gracilaria gracilis GNS1m male)
ATGGGGGTGGGTGAGAACTCAAGCTCGTCTCTGCTGTCGGTTTCGTTGAC
ATTCACACCTGGTGTATCGCCGGCTATGACCTATTCTACAATCCAAGTCA
AACGGTCACTAGCACTACTAACGGGAGTGAAGGCGCGTTGGATTGTGGTA
CGACGCGCGCATGGAGTGACGTTTCAGCTGAATGAATCAGAGCCAGAACA
GGTTCCGTTGGTATTTTACATTTCCACGCATACAAAGTGGGCGAGTTTGT
ACGCGTCGCGCATCAAGAATACGATCTCAAGTGGGAGACTTATTGCGAAC
AGTTTTGAGAATGTGACAGTGGCATCTGTGGAGGAGGCAGTGAAGCTGAA
TGTGACGCTGCCCGACGTTGCTCCGGAGGTGCCTGACGGGCTTGACAACA
GAAGTTCAGATGGACAGGGGGGCATTAACATGCAGCTGTTTTTCAAGGCA
ATGATGGTAATATTCAGTATCGCAGTGCTTGTGTCGGTGGCTATCATTGC
GTACAGCTTCGAAATGTGGCGGGTTCGTCGAAGGCGGCAACGGGAGTCGG
AGGAAGCCGGGTTGGCGACAGAAGTGTGA
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Coding sequence (CDS) from alignment at tig00000907_pilon:112479..113057+

>Ggra1868.t2 ID=Ggra1868.t2|Name=Ggra1868.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=579bp|location=Sequence derived from alignment at tig00000907_pilon:112479..113057+ (Gracilaria gracilis GNS1m male)
ATGGGGGTGGGTGAGAACTCAAGCTCGTCTCTGCTGTCGGTTTCGTTGAC
ATTCACACCTGGTGTATCGCCGGCTATGACCTATTCTACAATCCAAGTCA
AACGGTCACTAGCACTACTAACGGGAGTGAAGGCGCGTTGGATTGTGGTA
CGACGCGCGCATGGAGTGACGTTTCAGCTGAATGAATCAGAGCCAGAACA
GGTTCCGTTGGTATTTTACATTTCCACGCATACAAAGTGGGCGAGTTTGT
ACGCGTCGCGCATCAAGAATACGATCTCAAGTGGGAGACTTATTGCGAAC
AGTTTTGAGAATGTGACAGTGGCATCTGTGGAGGAGGCAGTGAAGCTGAA
TGTGACGCTGCCCGACGTTGCTCCGGAGGTGCCTGACGGGCTTGACAACA
GAAGTTCAGATGGACAGGGGGGCATTAACATGCAGCTGTTTTTCAAGGCA
ATGATGGTAATATTCAGTATCGCAGTGCTTGTGTCGGTGGCTATCATTGC
GTACAGCTTCGAAATGTGGCGGGTTCGTCGAAGGCGGCAACGGGAGTCGG
AGGAAGCCGGGTTGGCGACAGAAGTGTGA
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