Ggra1868.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1868.t1
Unique Name	Ggra1868.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	560

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000907_pilon	contig	tig00000907_pilon:111378..113057 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	937777.Deipe_3722
PFAMs	Inhibitor_I9,Peptidase_S8
Max annot lvl	1297\|Deinococcus-Thermus
KEGG ko	ko:K20754
Evalue	5.36e-49
EggNOG OGs	COG1404@1\|root,COG1404@2\|Bacteria,1WIDU@1297\|Deinococcus-Thermus
EC	3.4.21.111
Description	peptidase S8 and S53, subtilisin, kexin, sedolisin
COG category	O
BRITE	ko00000,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1868	Ggra1868	Gracilaria gracilis GNS1m male	gene	tig00000907_pilon 111378..113057 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1868.t1.start1	Ggra1868.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000907_pilon 111378..111380 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1868.t1.CDS1	Ggra1868.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000907_pilon 111378..113057 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1868.t1.exon1	Ggra1868.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000907_pilon 111378..113057 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1868.t1.stop1	Ggra1868.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000907_pilon 113055..113057 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1868.t1	Ggra1868.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000907_pilon 111378..113057 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000907_pilon:111378..113057+
coding sequence from alignment at tig00000907_pilon:111378..113057+

mRNA sequence

>Ggra1868.t1 ID=Ggra1868.t1|Name=Ggra1868.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=560bp
MDSKVIFDLLVGSWTCARGVRRAPCLALVYILFLCSLITFTECKNTPWHL
QRIVQRNALSRGQLESGEAAFNMSSIAQRPVNVYVLDSGIRTTHKEFEGN
RAILGPNIRSPGKSSTDCNGHGTHVAALAVGARSGVATKARAISVKVLDC
QGKGSCADILAGMEWVVQDSLMRRRRGERSVLVMSVGSTSDACSDTGEAA
RKLWKAGVFVAAAAGNRQSDACDLYPARSKYTMAVGAVDSQDRLYEKNNM
GSCVDIFAPGVELRSAAALESDTEMTVKSGTSMATPLVGGTAALILGARW
LLSADQVKEVLISSSTKNKVLERDGRVMTGTKNRLLYAPWNRLFTDIKMN
AGVQDKGAYDRAAPSAKMGVGENSSSSLLSVSLTFTPGVSPAMTYSTIQV
KRSLALLTGVKARWIVVRRAHGVTFQLNESEPEQVPLVFYISTHTKWASL
YASRIKNTISSGRLIANSFENVTVASVEEAVKLNVTLPDVAPEVPDGLDN
RSSDGQGGINMQLFFKAMMVIFSIAVLVSVAIIAYSFEMWRVRRRRQRES
EEAGLATEV*

spliced messenger RNA

>Ggra1868.t1 ID=Ggra1868.t1|Name=Ggra1868.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1680bp|location=Sequence derived from alignment at tig00000907_pilon:111378..113057+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCCAAAGTCATCTTTGATTTACTTGTGGGGTCATGGACCTGCGC
AAGAGGTGTACGAAGAGCTCCATGTCTTGCTCTCGTATACATTTTGTTCT
TGTGCTCTCTGATAACCTTCACTGAGTGCAAGAACACTCCGTGGCACTTG
CAGCGAATAGTGCAGAGAAATGCACTATCCCGAGGGCAGCTGGAGAGCGG
AGAGGCGGCTTTCAACATGTCGTCAATTGCACAAAGACCAGTGAATGTCT
ATGTGCTGGACAGCGGGATTCGAACGACGCACAAGGAGTTCGAGGGCAAT
CGAGCCATCCTCGGTCCGAATATCCGCAGTCCAGGAAAGAGCTCGACGGA
CTGCAACGGGCATGGAACGCACGTTGCTGCATTGGCTGTCGGAGCGCGGA
GCGGGGTGGCAACAAAAGCACGAGCGATATCGGTAAAAGTGCTTGATTGC
CAGGGGAAAGGGTCCTGCGCTGACATCCTTGCAGGGATGGAGTGGGTGGT
GCAGGACAGTTTGATGCGCCGCCGGCGGGGAGAGCGGTCGGTATTGGTCA
TGTCTGTCGGATCCACCAGTGACGCATGTTCCGATACCGGGGAGGCGGCG
CGGAAGTTGTGGAAGGCAGGGGTGTTCGTTGCTGCGGCTGCGGGAAATCG
CCAGTCCGACGCTTGTGACTTGTACCCAGCCCGAAGCAAATACACGATGG
CTGTCGGTGCGGTGGACAGCCAGGACAGGCTCTACGAGAAGAACAACATG
GGTTCTTGCGTAGATATCTTTGCGCCGGGGGTTGAACTCAGGTCAGCGGC
CGCGCTGGAATCGGACACCGAGATGACGGTGAAGTCCGGTACCAGCATGG
CCACCCCGCTTGTGGGTGGAACGGCGGCGTTGATCCTTGGGGCACGGTGG
TTGCTCTCTGCCGACCAGGTGAAGGAGGTGTTGATCTCTTCCAGCACGAA
GAACAAAGTGCTGGAAAGAGATGGAAGAGTGATGACGGGCACGAAGAACC
GTCTGCTATACGCCCCTTGGAACCGGTTGTTCACCGATATAAAAATGAAC
GCCGGGGTGCAAGACAAGGGCGCGTACGACAGAGCGGCGCCGTCTGCCAA
GATGGGGGTGGGTGAGAACTCAAGCTCGTCTCTGCTGTCGGTTTCGTTGA
CATTCACACCTGGTGTATCGCCGGCTATGACCTATTCTACAATCCAAGTC
AAACGGTCACTAGCACTACTAACGGGAGTGAAGGCGCGTTGGATTGTGGT
ACGACGCGCGCATGGAGTGACGTTTCAGCTGAATGAATCAGAGCCAGAAC
AGGTTCCGTTGGTATTTTACATTTCCACGCATACAAAGTGGGCGAGTTTG
TACGCGTCGCGCATCAAGAATACGATCTCAAGTGGGAGACTTATTGCGAA
CAGTTTTGAGAATGTGACAGTGGCATCTGTGGAGGAGGCAGTGAAGCTGA
ATGTGACGCTGCCCGACGTTGCTCCGGAGGTGCCTGACGGGCTTGACAAC
AGAAGTTCAGATGGACAGGGGGGCATTAACATGCAGCTGTTTTTCAAGGC
AATGATGGTAATATTCAGTATCGCAGTGCTTGTGTCGGTGGCTATCATTG
CGTACAGCTTCGAAATGTGGCGGGTTCGTCGAAGGCGGCAACGGGAGTCG
GAGGAAGCCGGGTTGGCGACAGAAGTGTGA

protein sequence of Ggra1868.t1

>Ggra1868.t1 ID=Ggra1868.t1|Name=Ggra1868.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=560bp
MDSKVIFDLLVGSWTCARGVRRAPCLALVYILFLCSLITFTECKNTPWHL
QRIVQRNALSRGQLESGEAAFNMSSIAQRPVNVYVLDSGIRTTHKEFEGN
RAILGPNIRSPGKSSTDCNGHGTHVAALAVGARSGVATKARAISVKVLDC
QGKGSCADILAGMEWVVQDSLMRRRRGERSVLVMSVGSTSDACSDTGEAA
RKLWKAGVFVAAAAGNRQSDACDLYPARSKYTMAVGAVDSQDRLYEKNNM
GSCVDIFAPGVELRSAAALESDTEMTVKSGTSMATPLVGGTAALILGARW
LLSADQVKEVLISSSTKNKVLERDGRVMTGTKNRLLYAPWNRLFTDIKMN
AGVQDKGAYDRAAPSAKMGVGENSSSSLLSVSLTFTPGVSPAMTYSTIQV
KRSLALLTGVKARWIVVRRAHGVTFQLNESEPEQVPLVFYISTHTKWASL
YASRIKNTISSGRLIANSFENVTVASVEEAVKLNVTLPDVAPEVPDGLDN
RSSDGQGGINMQLFFKAMMVIFSIAVLVSVAIIAYSFEMWRVRRRRQRES
EEAGLATEV*

mRNA from alignment at tig00000907_pilon:111378..113057+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1868.t1 ID=Ggra1868.t1|Name=Ggra1868.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1680bp|location=Sequence derived from alignment at tig00000907_pilon:111378..113057+ (Gracilaria gracilis GNS1m male)
ATGGATTCCAAAGTCATCTTTGATTTACTTGTGGGGTCATGGACCTGCGC
AAGAGGTGTACGAAGAGCTCCATGTCTTGCTCTCGTATACATTTTGTTCT
TGTGCTCTCTGATAACCTTCACTGAGTGCAAGAACACTCCGTGGCACTTG
CAGCGAATAGTGCAGAGAAATGCACTATCCCGAGGGCAGCTGGAGAGCGG
AGAGGCGGCTTTCAACATGTCGTCAATTGCACAAAGACCAGTGAATGTCT
ATGTGCTGGACAGCGGGATTCGAACGACGCACAAGGAGTTCGAGGGCAAT
CGAGCCATCCTCGGTCCGAATATCCGCAGTCCAGGAAAGAGCTCGACGGA
CTGCAACGGGCATGGAACGCACGTTGCTGCATTGGCTGTCGGAGCGCGGA
GCGGGGTGGCAACAAAAGCACGAGCGATATCGGTAAAAGTGCTTGATTGC
CAGGGGAAAGGGTCCTGCGCTGACATCCTTGCAGGGATGGAGTGGGTGGT
GCAGGACAGTTTGATGCGCCGCCGGCGGGGAGAGCGGTCGGTATTGGTCA
TGTCTGTCGGATCCACCAGTGACGCATGTTCCGATACCGGGGAGGCGGCG
CGGAAGTTGTGGAAGGCAGGGGTGTTCGTTGCTGCGGCTGCGGGAAATCG
CCAGTCCGACGCTTGTGACTTGTACCCAGCCCGAAGCAAATACACGATGG
CTGTCGGTGCGGTGGACAGCCAGGACAGGCTCTACGAGAAGAACAACATG
GGTTCTTGCGTAGATATCTTTGCGCCGGGGGTTGAACTCAGGTCAGCGGC
CGCGCTGGAATCGGACACCGAGATGACGGTGAAGTCCGGTACCAGCATGG
CCACCCCGCTTGTGGGTGGAACGGCGGCGTTGATCCTTGGGGCACGGTGG
TTGCTCTCTGCCGACCAGGTGAAGGAGGTGTTGATCTCTTCCAGCACGAA
GAACAAAGTGCTGGAAAGAGATGGAAGAGTGATGACGGGCACGAAGAACC
GTCTGCTATACGCCCCTTGGAACCGGTTGTTCACCGATATAAAAATGAAC
GCCGGGGTGCAAGACAAGGGCGCGTACGACAGAGCGGCGCCGTCTGCCAA
GATGGGGGTGGGTGAGAACTCAAGCTCGTCTCTGCTGTCGGTTTCGTTGA
CATTCACACCTGGTGTATCGCCGGCTATGACCTATTCTACAATCCAAGTC
AAACGGTCACTAGCACTACTAACGGGAGTGAAGGCGCGTTGGATTGTGGT
ACGACGCGCGCATGGAGTGACGTTTCAGCTGAATGAATCAGAGCCAGAAC
AGGTTCCGTTGGTATTTTACATTTCCACGCATACAAAGTGGGCGAGTTTG
TACGCGTCGCGCATCAAGAATACGATCTCAAGTGGGAGACTTATTGCGAA
CAGTTTTGAGAATGTGACAGTGGCATCTGTGGAGGAGGCAGTGAAGCTGA
ATGTGACGCTGCCCGACGTTGCTCCGGAGGTGCCTGACGGGCTTGACAAC
AGAAGTTCAGATGGACAGGGGGGCATTAACATGCAGCTGTTTTTCAAGGC
AATGATGGTAATATTCAGTATCGCAGTGCTTGTGTCGGTGGCTATCATTG
CGTACAGCTTCGAAATGTGGCGGGTTCGTCGAAGGCGGCAACGGGAGTCG
GAGGAAGCCGGGTTGGCGACAGAAGTGTGA

Coding sequence (CDS) from alignment at tig00000907_pilon:111378..113057+

>Ggra1868.t1 ID=Ggra1868.t1|Name=Ggra1868.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1680bp|location=Sequence derived from alignment at tig00000907_pilon:111378..113057+ (Gracilaria gracilis GNS1m male)
ATGGATTCCAAAGTCATCTTTGATTTACTTGTGGGGTCATGGACCTGCGC
AAGAGGTGTACGAAGAGCTCCATGTCTTGCTCTCGTATACATTTTGTTCT
TGTGCTCTCTGATAACCTTCACTGAGTGCAAGAACACTCCGTGGCACTTG
CAGCGAATAGTGCAGAGAAATGCACTATCCCGAGGGCAGCTGGAGAGCGG
AGAGGCGGCTTTCAACATGTCGTCAATTGCACAAAGACCAGTGAATGTCT
ATGTGCTGGACAGCGGGATTCGAACGACGCACAAGGAGTTCGAGGGCAAT
CGAGCCATCCTCGGTCCGAATATCCGCAGTCCAGGAAAGAGCTCGACGGA
CTGCAACGGGCATGGAACGCACGTTGCTGCATTGGCTGTCGGAGCGCGGA
GCGGGGTGGCAACAAAAGCACGAGCGATATCGGTAAAAGTGCTTGATTGC
CAGGGGAAAGGGTCCTGCGCTGACATCCTTGCAGGGATGGAGTGGGTGGT
GCAGGACAGTTTGATGCGCCGCCGGCGGGGAGAGCGGTCGGTATTGGTCA
TGTCTGTCGGATCCACCAGTGACGCATGTTCCGATACCGGGGAGGCGGCG
CGGAAGTTGTGGAAGGCAGGGGTGTTCGTTGCTGCGGCTGCGGGAAATCG
CCAGTCCGACGCTTGTGACTTGTACCCAGCCCGAAGCAAATACACGATGG
CTGTCGGTGCGGTGGACAGCCAGGACAGGCTCTACGAGAAGAACAACATG
GGTTCTTGCGTAGATATCTTTGCGCCGGGGGTTGAACTCAGGTCAGCGGC
CGCGCTGGAATCGGACACCGAGATGACGGTGAAGTCCGGTACCAGCATGG
CCACCCCGCTTGTGGGTGGAACGGCGGCGTTGATCCTTGGGGCACGGTGG
TTGCTCTCTGCCGACCAGGTGAAGGAGGTGTTGATCTCTTCCAGCACGAA
GAACAAAGTGCTGGAAAGAGATGGAAGAGTGATGACGGGCACGAAGAACC
GTCTGCTATACGCCCCTTGGAACCGGTTGTTCACCGATATAAAAATGAAC
GCCGGGGTGCAAGACAAGGGCGCGTACGACAGAGCGGCGCCGTCTGCCAA
GATGGGGGTGGGTGAGAACTCAAGCTCGTCTCTGCTGTCGGTTTCGTTGA
CATTCACACCTGGTGTATCGCCGGCTATGACCTATTCTACAATCCAAGTC
AAACGGTCACTAGCACTACTAACGGGAGTGAAGGCGCGTTGGATTGTGGT
ACGACGCGCGCATGGAGTGACGTTTCAGCTGAATGAATCAGAGCCAGAAC
AGGTTCCGTTGGTATTTTACATTTCCACGCATACAAAGTGGGCGAGTTTG
TACGCGTCGCGCATCAAGAATACGATCTCAAGTGGGAGACTTATTGCGAA
CAGTTTTGAGAATGTGACAGTGGCATCTGTGGAGGAGGCAGTGAAGCTGA
ATGTGACGCTGCCCGACGTTGCTCCGGAGGTGCCTGACGGGCTTGACAAC
AGAAGTTCAGATGGACAGGGGGGCATTAACATGCAGCTGTTTTTCAAGGC
AATGATGGTAATATTCAGTATCGCAGTGCTTGTGTCGGTGGCTATCATTG
CGTACAGCTTCGAAATGTGGCGGGTTCGTCGAAGGCGGCAACGGGAGTCG
GAGGAAGCCGGGTTGGCGACAGAAGTGTGA