Ggra827.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra827.t1
Unique NameGgra827.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length163
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000906_piloncontigtig00000906_pilon:226146..226723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra827Ggra827Gracilaria gracilis GNS1m malegenetig00000906_pilon 226146..226723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra827.t1Ggra827.t1Gracilaria gracilis GNS1m malepolypeptidetig00000906_pilon 226146..226723 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra827.t1.stop1Ggra827.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000906_pilon 226146..226148 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra827.t1.CDS1Ggra827.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000906_pilon 226146..226311 -
Ggra827.t1.CDS2Ggra827.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000906_pilon 226401..226723 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra827.t1.exon1Ggra827.t1.exon1Gracilaria gracilis GNS1m maleexontig00000906_pilon 226146..226311 -
Ggra827.t1.exon2Ggra827.t1.exon2Gracilaria gracilis GNS1m maleexontig00000906_pilon 226401..226723 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra827.t1.intron1Ggra827.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000906_pilon 226312..226400 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra827.t1.start1Ggra827.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000906_pilon 226721..226723 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra827.t1 ID=Ggra827.t1|Name=Ggra827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=163bp
MLCCTVLGSVVAEKKDLASSTEAKGMKKTDADLTPSIRWDKGGDGGRRRR
GRGFHGAPGRGFVFGRPAGPGYGYVPVPYPYGPYYPYGFPAPRPFVPRPR
PFVPRPRPPSPEASPAAEAVLSPAEAVVPPSPTEASLRSAATPRRSAAAQ
EEEEVPQGKRQR*
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spliced messenger RNA

>Ggra827.t1 ID=Ggra827.t1|Name=Ggra827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=489bp|location=Sequence derived from alignment at tig00000906_pilon:226146..226723- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTGCTGCACTGTCCTAGGCAGTGTTGTCGCCGAGAAGAAGGACTT
GGCTTCCTCCACTGAAGCCAAGGGAATGAAGAAAACCGACGCCGATCTTA
CACCCAGCATTCGTTGGGACAAAGGTGGGGACGGTGGTCGCCGCCGTCGC
GGCCGTGGATTCCATGGCGCACCAGGTCGAGGTTTCGTGTTCGGACGTCC
TGCGGGCCCGGGGTACGGTTACGTCCCAGTGCCGTACCCGTACGGACCGT
ACTACCCGTACGGCTTCCCCGCCCCGAGGCCATTCGTTCCACGTCCGAGA
CCGTTTGTCCCTCGCCCGAGGCCTCCCTCGCCCGAGGCCAGTCCTGCCGC
CGAGGCCGTTCTCTCCCCCGCCGAGGCAGTCGTTCCCCCGTCCCCCACCG
AGGCCAGTCTTCGTTCCGCAGCGACCCCCCGTCGTTCAGCAGCCGCGCAG
GAGGAGGAGGAGGTGCCGCAGGGGAAGCGGCAGCGATAG
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protein sequence of Ggra827.t1

>Ggra827.t1 ID=Ggra827.t1|Name=Ggra827.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=163bp
MLCCTVLGSVVAEKKDLASSTEAKGMKKTDADLTPSIRWDKGGDGGRRRR
GRGFHGAPGRGFVFGRPAGPGYGYVPVPYPYGPYYPYGFPAPRPFVPRPR
PFVPRPRPPSPEASPAAEAVLSPAEAVVPPSPTEASLRSAATPRRSAAAQ
EEEEVPQGKRQR*
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mRNA from alignment at tig00000906_pilon:226146..226723-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra827.t1 ID=Ggra827.t1|Name=Ggra827.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=578bp|location=Sequence derived from alignment at tig00000906_pilon:226146..226723- (Gracilaria gracilis GNS1m male)
ATGCTGTGCTGCACTGTCCTAGGCAGTGTTGTCGCCGAGAAGAAGGACTT
GGCTTCCTCCACTGAAGCCAAGGGAATGAAGAAAACCGACGCCGATCTTA
CACCCAGCATTCGTTGGGACAAAGGTGGGGACGGTGGTCGCCGCCGTCGC
GGCCGTGGATTCCATGGCGCACCAGGTCGAGGTTTCGTGTTCGGACGTCC
TGCGGGCCCGGGGTACGGTTACGTCCCAGTGCCGTACCCGTACGGACCGT
ACTACCCGTACGGCTTCCCCGCCCCGAGGCCATTCGTTCCACGTCCGAGA
CCGTTTGTCCCTCGCCCGAGGCCGTTTGTTCCCCGCACTGCTCCCCCGCC
ACCCCCTCCGAGACCAGTGGCTCCCCGTCCGCGTCCCCCGGCTCCCCGCC
CATTGCCTCCAGTCCCTCGCCCGAGGCCAGTCCTGCCGCCGAGGCCGTTC
TCTCCCCCGCCGAGGCAGTCGTTCCCCCGTCCCCCACCGAGGCCAGTCTT
CGTTCCGCAGCGACCCCCCGTCGTTCAGCAGCCGCGCAGGAGGAGGAGGA
GGTGCCGCAGGGGAAGCGGCAGCGATAG
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Coding sequence (CDS) from alignment at tig00000906_pilon:226146..226723-

>Ggra827.t1 ID=Ggra827.t1|Name=Ggra827.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=489bp|location=Sequence derived from alignment at tig00000906_pilon:226146..226723- (Gracilaria gracilis GNS1m male)
ATGCTGTGCTGCACTGTCCTAGGCAGTGTTGTCGCCGAGAAGAAGGACTT
GGCTTCCTCCACTGAAGCCAAGGGAATGAAGAAAACCGACGCCGATCTTA
CACCCAGCATTCGTTGGGACAAAGGTGGGGACGGTGGTCGCCGCCGTCGC
GGCCGTGGATTCCATGGCGCACCAGGTCGAGGTTTCGTGTTCGGACGTCC
TGCGGGCCCGGGGTACGGTTACGTCCCAGTGCCGTACCCGTACGGACCGT
ACTACCCGTACGGCTTCCCCGCCCCGAGGCCATTCGTTCCACGTCCGAGA
CCGTTTGTCCCTCGCCCGAGGCCTCCCTCGCCCGAGGCCAGTCCTGCCGC
CGAGGCCGTTCTCTCCCCCGCCGAGGCAGTCGTTCCCCCGTCCCCCACCG
AGGCCAGTCTTCGTTCCGCAGCGACCCCCCGTCGTTCAGCAGCCGCGCAG
GAGGAGGAGGAGGTGCCGCAGGGGAAGCGGCAGCGATAG
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