Ggra825.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra825.t1
Unique NameGgra825.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length316
Homology
BLAST of Ggra825.t1 vs. uniprot
Match: A0A2V3IRT2 (Bromodomain and PHD finger-containing protein 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRT2_9FLOR)

HSP 1 Score: 348 bits (894), Expect = 1.420e-108
Identity = 189/319 (59.25%), Postives = 234/319 (73.35%), Query Frame = 0
Query:    3 RTINEYNGINGLRKFLDEALIKEVENTPSQIVDYSMPHGVSLATLNDIVRLTSMNGMRVSANEAKQIEALQKHAQRFLSQLRPETAGKIVNNPAQQSNVLIEYQRRASEIRRQRRVEAEKQATLIIEQMRKVAVPQKESLQSMKQENLNSAKGPQQLA-----ASQTPNVNTSVIEISAQRNPQLGLLGHNH-APPAVSSNAFGRQSASFTAAGLSTDAKITCTNCGTANTPRWRTNELMAPRDLCVTCGLFWEKTRQMRPKDFATQSSFFQSIQKPISTQNGRTQIGATPNPLQAIIPGLSPNGVSKPPIQKKTPHGA 315
            RTINEYNGI GLRKFLD+ LIKEVE+TPSQI+D+SMPHGVSLATL+DIV LT ++ M V+ N+AK IE L+K AQ  LS+LRP+TA KI  NPAQQ N L E+QRR   +R+QR  EA+K A LI+EQMRKVA+P K+  +     + N A G  +++     + Q    ++SV ++S Q+N QLGLL  N     A  +NA  R + SF   G S D KITCTNCGT NTPRW+++++ APR LCVTCGLFWEKTRQMRPKDFATQ+SFFQS+QK + TQNGRT +  + + L  +IPG+SPNGVSKPPIQKKT   A
Sbjct:  423 RTINEYNGIQGLRKFLDDDLIKEVESTPSQIIDFSMPHGVSLATLHDIVSLTQVDPMAVAPNQAKAIEMLRKQAQTHLSRLRPDTAAKIARNPAQQPNALFEFQRRTIALRKQREHEADKHAALIVEQMRKVALPPKDPPRP----DRNEASGAMKISCPNAVSQQLQTDSSSVHDVSLQQNGQLGLLRQNQPTTTAFPANALVRPAVSFALRGQSIDTKITCTNCGTVNTPRWQSSDITAPRGLCVTCGLFWEKTRQMRPKDFATQTSFFQSMQKAVPTQNGRTILNKSQSQLHTMIPGMSPNGVSKPPIQKKTTPSA 737          
BLAST of Ggra825.t1 vs. uniprot
Match: R7Q6X1 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6X1_CHOCR)

HSP 1 Score: 105 bits (263), Expect = 1.350e-21
Identity = 100/337 (29.67%), Postives = 157/337 (46.59%), Query Frame = 0
Query:    6 NEYNGINGLRKFLDEALIKEVENTPSQIVDYSMPHGVSLATLNDIVRLTSMNGMRVSANEAKQIEALQKHAQRFLSQLRPETAGKIVNNPAQQSNVLIEYQRRASEIRRQRRVEAEKQATLIIEQMR---------KVAVPQKE-SLQSMKQENLNSAKGPQQLAASQTPNVNTSVIEISAQRNPQLGLLGHNHAPPAVSSNAFGRQSASFTAAGLSTDAKIT----------------CTNCGTANTPRWRTNEL--MAPRDLCVTCGLFWEKTRQMRPKDFATQSSFFQSIQKPISTQNGRTQIGAT-----PNPLQAIIPGLSPNGVSKPPIQK 309
            +E NGI+GLR+ L E + KEV+  P  +VD+SMPHGVS+AT+++I RL +   + ++A + + I++L K       + R   AG +          L E Q R+  I++Q   EA +QA  IIEQ +          VA+ ++E  L S K++      G   +  +     + S ++     N             A +++    Q+ + +  GLS    I                 C NCGT +   WR   L       LC+ CGL+WEKT + RPK+   Q+S   S  +  S  +    +GA+      +P+ +  P  +PNGV+K PIQK
Sbjct:  434 HEMNGIDGLRQLLGEDIAKEVDTVPVDVVDFSMPHGVSVATMDEIARLQNAPALGIAAKDLQCIDSLHKQVLSDAHRRRASPAGAMDTGSNFTPAQLHEIQLRSLGIKQQLCTEAHRQAN-IIEQRKHMSSAHHPNNVALHKRELQLLSQKRQRSGVTDGRSVMRPAHHNFSSQSSVQSQEMNNLLKARAQQAAVAAAKAASLDAHQNHAASNRGLSHSVGIPSHRTSHELPPANQNSICNNCGTRDQFGWRAGGLGPEGVERLCIPCGLYWEKTHRNRPKELWGQTSHRTS--RTPSNGSFVNSVGASCGLVNASPMSS--PHATPNGVAKRPIQK 765          
The following BLAST results are available for this feature:
BLAST of Ggra825.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IRT21.420e-10859.25Bromodomain and PHD finger-containing protein 3 n=... [more]
R7Q6X11.350e-2129.67Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000679Zinc finger, GATA-typeSMARTSM00401GATA_3coord: 213..265
e-value: 9.9E-6
score: 33.1
IPR000679Zinc finger, GATA-typePFAMPF00320GATAcoord: 219..255
e-value: 1.3E-8
score: 34.3
IPR000679Zinc finger, GATA-typePROSITEPS50114GATA_ZN_FINGER_2coord: 213..257
score: 11.397912
IPR000679Zinc finger, GATA-typeCDDcd00202ZnF_GATAcoord: 218..257
e-value: 6.72942E-11
score: 55.0714
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 212..272
e-value: 1.5E-11
score: 45.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 294..315
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 213..263

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000906_piloncontigtig00000906_pilon:222310..223352 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra825.t1Ggra825.t1Gracilaria gracilis GNS1m malemRNAtig00000906_pilon 222310..223352 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra825.t1 ID=Ggra825.t1|Name=Ggra825.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=316bp
MQRTINEYNGINGLRKFLDEALIKEVENTPSQIVDYSMPHGVSLATLNDI
VRLTSMNGMRVSANEAKQIEALQKHAQRFLSQLRPETAGKIVNNPAQQSN
VLIEYQRRASEIRRQRRVEAEKQATLIIEQMRKVAVPQKESLQSMKQENL
NSAKGPQQLAASQTPNVNTSVIEISAQRNPQLGLLGHNHAPPAVSSNAFG
RQSASFTAAGLSTDAKITCTNCGTANTPRWRTNELMAPRDLCVTCGLFWE
KTRQMRPKDFATQSSFFQSIQKPISTQNGRTQIGATPNPLQAIIPGLSPN
GVSKPPIQKKTPHGA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000679Znf_GATA
IPR013088Znf_NHR/GATA