Ggra3425.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra3425.t1
Unique Name	Ggra3425.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	408

Homology

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BLAST of Ggra3425.t1 vs. uniprot
Match: protein DEK-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D485D (protein DEK-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D485D)

HSP 1 Score: 88.2 bits (217), Expect = 2.600e-15
Identity = 60/190 (31.58%), Postives = 98/190 (51.58%), Query Frame = 0

Query:  115 APTHVRRVSTGALGVIGHGEKLCNIPNIMYNIDKAHSKDAEIEFLHRLLFNFVGTAHTRKSNIRSFSGFVFASDKDRNRVRDKLMRAHLNMVRKMAKFLDVPVNKPPRAGDQASGEPSLNERMNAGLGDP----SRLSLNGERRALRAEAMGMDDNEISETCRDIDETNGKPSQTNARETTMTASKDDLV 300
            A +HVR    G      +G  L  IPN+ + ++ A  +D E+  LHRL+ N  G A  RKSNIR FSGF F SDKDR+R++ KL +  + ++R++A+ LD+P        + +  +P+L + + A L DP     R+ L  + +  + E     +  + +T R    +  K  +   ++T   +  DD V
Sbjct:   49 AESHVRERKKG------NGVALGQIPNVSFLLNNAKGRDDELILLHRLVLNSAGVATKRKSNIREFSGFAFDSDKDRDRIKQKLSKEPIALIRRVAQLLDLP--------NVSVTKPTLIDAVTAFLEDPRPGVDRIDLAAKAQKRKEERAWKRERRLLDTDRPNKSSGRKAKRKKHKDTDSESGTDDEV 224

The following BLAST results are available for this feature:

BLAST of Ggra3425.t1 vs. uniprot

BLAST of Ggra3425.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
protein DEK-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D485D	2.600e-15	31.58	protein DEK-like n=1 Tax=Mercenaria mercenaria Tax...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 316..346
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 218..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 274..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 381..395
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 278..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 354..407
None	No IPR available	PANTHER	PTHR13468:SF1	PROTEIN DEK	coord: 75..393
IPR044198	Protein DEK	PANTHER	PTHR13468	DEK PROTEIN	coord: 75..393

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000905_pilon	contig	tig00000905_pilon:335822..337045 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3425.t1	Ggra3425.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000905_pilon 335822..337045 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra3425.t1 ID=Ggra3425.t1|Name=Ggra3425.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=408bp
MKLEPTNPSSDCAALRFSSVANGSSSQRPDQNDLPDKAPQHSKSNGRLHS
PTKRGKRSLDAEHDSDALPATAIETNARQTAPPTDTPSAPASSSTQRRQP
GTRKRKKTRMFEIAAPTHVRRVSTGALGVIGHGEKLCNIPNIMYNIDKAH
SKDAEIEFLHRLLFNFVGTAHTRKSNIRSFSGFVFASDKDRNRVRDKLMR
AHLNMVRKMAKFLDVPVNKPPRAGDQASGEPSLNERMNAGLGDPSRLSLN
GERRALRAEAMGMDDNEISETCRDIDETNGKPSQTNARETTMTASKDDLV
RVLLEFLEKPQLIGGRESLAERDKELRRQKKAADRARAQKAALKKAAEKK
AAMLKKKEVRESDEDGDEDLETGGTTWIELARQKKEAKAREESAAKRNGF
LTTNGHG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR044198	DEK