Ggra3425.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3425.t1
Unique NameGgra3425.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length408
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000905_piloncontigtig00000905_pilon:335822..337045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003058480.1
PFAMsDEK_C
Max annot lvl3041|Chlorophyta
KEGG koko:K17046
Evalue7.45e-10
EggNOG OGsKOG2266@1|root,KOG2266@2759|Eukaryota,37WAS@33090|Viridiplantae,34I5K@3041|Chlorophyta
Descriptionhomolog of the human DEK protein, an abundant chromatin protein that is linked with cancers and autoimmune disease. ChromDB ID
COG categoryB
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3425Ggra3425Gracilaria gracilis GNS1m malegenetig00000905_pilon 335822..337045 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3425.t1.stop1Ggra3425.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000905_pilon 335822..335824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3425.t1.CDS1Ggra3425.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000905_pilon 335822..337045 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3425.t1.exon1Ggra3425.t1.exon1Gracilaria gracilis GNS1m maleexontig00000905_pilon 335822..337045 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3425.t1.start1Ggra3425.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000905_pilon 337043..337045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3425.t1Ggra3425.t1Gracilaria gracilis GNS1m malepolypeptidetig00000905_pilon 335822..337045 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3425.t1 ID=Ggra3425.t1|Name=Ggra3425.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=408bp
MKLEPTNPSSDCAALRFSSVANGSSSQRPDQNDLPDKAPQHSKSNGRLHS
PTKRGKRSLDAEHDSDALPATAIETNARQTAPPTDTPSAPASSSTQRRQP
GTRKRKKTRMFEIAAPTHVRRVSTGALGVIGHGEKLCNIPNIMYNIDKAH
SKDAEIEFLHRLLFNFVGTAHTRKSNIRSFSGFVFASDKDRNRVRDKLMR
AHLNMVRKMAKFLDVPVNKPPRAGDQASGEPSLNERMNAGLGDPSRLSLN
GERRALRAEAMGMDDNEISETCRDIDETNGKPSQTNARETTMTASKDDLV
RVLLEFLEKPQLIGGRESLAERDKELRRQKKAADRARAQKAALKKAAEKK
AAMLKKKEVRESDEDGDEDLETGGTTWIELARQKKEAKAREESAAKRNGF
LTTNGHG*
back to top

spliced messenger RNA

>Ggra3425.t1 ID=Ggra3425.t1|Name=Ggra3425.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00000905_pilon:335822..337045- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTGGAACCTACAAATCCTTCTTCTGATTGTGCTGCGTTGCGCTT
TTCGTCGGTTGCCAACGGCTCTTCTTCGCAGCGCCCTGATCAGAATGACC
TTCCCGACAAAGCGCCGCAGCATTCCAAGTCAAACGGCAGATTACATTCT
CCGACGAAGCGAGGCAAGCGTTCATTGGATGCAGAACACGATTCCGACGC
ACTACCTGCTACTGCTATCGAAACAAACGCGCGACAAACAGCCCCTCCAA
CCGATACACCGTCTGCCCCTGCATCGAGTTCCACGCAACGCCGTCAACCT
GGCACCCGCAAGCGCAAGAAGACAAGAATGTTTGAAATTGCCGCCCCGAC
GCACGTGCGTCGAGTGAGCACCGGCGCGCTCGGCGTGATTGGTCATGGAG
AAAAGCTTTGCAACATACCCAACATCATGTACAACATCGACAAAGCACAC
TCCAAGGATGCGGAGATAGAGTTTCTTCATCGTCTTTTATTCAACTTTGT
CGGCACCGCGCACACGAGGAAATCTAACATTCGATCGTTCTCAGGCTTTG
TTTTCGCGTCGGACAAGGACAGAAATCGTGTTCGTGACAAACTGATGCGC
GCCCACTTGAATATGGTCAGGAAGATGGCCAAGTTTTTGGATGTGCCTGT
GAACAAACCGCCCAGAGCTGGTGACCAAGCGAGTGGAGAGCCTTCTCTGA
ACGAGCGTATGAATGCTGGTCTGGGCGATCCTTCCCGGCTTTCACTAAAT
GGGGAGAGAAGGGCACTTCGTGCGGAGGCGATGGGAATGGATGACAACGA
AATCAGTGAGACATGTCGAGATATAGACGAAACGAATGGGAAACCGTCTC
AGACGAATGCGCGCGAAACAACGATGACTGCCAGCAAAGACGACCTTGTG
CGTGTTCTCTTGGAATTTTTGGAAAAGCCGCAGCTGATTGGGGGGAGGGA
GAGTTTAGCTGAACGCGATAAAGAACTTCGACGACAAAAGAAGGCCGCGG
ACAGGGCCAGGGCACAGAAGGCAGCTTTGAAGAAGGCGGCTGAAAAGAAG
GCAGCGATGCTGAAGAAGAAGGAGGTGCGCGAAAGTGATGAGGATGGTGA
TGAAGATCTTGAAACTGGTGGTACAACATGGATCGAACTTGCGAGACAAA
AGAAAGAAGCTAAAGCACGAGAAGAAAGCGCGGCGAAACGAAACGGGTTC
CTGACAACGAACGGGCACGGGTAG
back to top

protein sequence of Ggra3425.t1

>Ggra3425.t1 ID=Ggra3425.t1|Name=Ggra3425.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=408bp
MKLEPTNPSSDCAALRFSSVANGSSSQRPDQNDLPDKAPQHSKSNGRLHS
PTKRGKRSLDAEHDSDALPATAIETNARQTAPPTDTPSAPASSSTQRRQP
GTRKRKKTRMFEIAAPTHVRRVSTGALGVIGHGEKLCNIPNIMYNIDKAH
SKDAEIEFLHRLLFNFVGTAHTRKSNIRSFSGFVFASDKDRNRVRDKLMR
AHLNMVRKMAKFLDVPVNKPPRAGDQASGEPSLNERMNAGLGDPSRLSLN
GERRALRAEAMGMDDNEISETCRDIDETNGKPSQTNARETTMTASKDDLV
RVLLEFLEKPQLIGGRESLAERDKELRRQKKAADRARAQKAALKKAAEKK
AAMLKKKEVRESDEDGDEDLETGGTTWIELARQKKEAKAREESAAKRNGF
LTTNGHG*
back to top

mRNA from alignment at tig00000905_pilon:335822..337045-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3425.t1 ID=Ggra3425.t1|Name=Ggra3425.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00000905_pilon:335822..337045- (Gracilaria gracilis GNS1m male)
ATGAAGCTGGAACCTACAAATCCTTCTTCTGATTGTGCTGCGTTGCGCTT
TTCGTCGGTTGCCAACGGCTCTTCTTCGCAGCGCCCTGATCAGAATGACC
TTCCCGACAAAGCGCCGCAGCATTCCAAGTCAAACGGCAGATTACATTCT
CCGACGAAGCGAGGCAAGCGTTCATTGGATGCAGAACACGATTCCGACGC
ACTACCTGCTACTGCTATCGAAACAAACGCGCGACAAACAGCCCCTCCAA
CCGATACACCGTCTGCCCCTGCATCGAGTTCCACGCAACGCCGTCAACCT
GGCACCCGCAAGCGCAAGAAGACAAGAATGTTTGAAATTGCCGCCCCGAC
GCACGTGCGTCGAGTGAGCACCGGCGCGCTCGGCGTGATTGGTCATGGAG
AAAAGCTTTGCAACATACCCAACATCATGTACAACATCGACAAAGCACAC
TCCAAGGATGCGGAGATAGAGTTTCTTCATCGTCTTTTATTCAACTTTGT
CGGCACCGCGCACACGAGGAAATCTAACATTCGATCGTTCTCAGGCTTTG
TTTTCGCGTCGGACAAGGACAGAAATCGTGTTCGTGACAAACTGATGCGC
GCCCACTTGAATATGGTCAGGAAGATGGCCAAGTTTTTGGATGTGCCTGT
GAACAAACCGCCCAGAGCTGGTGACCAAGCGAGTGGAGAGCCTTCTCTGA
ACGAGCGTATGAATGCTGGTCTGGGCGATCCTTCCCGGCTTTCACTAAAT
GGGGAGAGAAGGGCACTTCGTGCGGAGGCGATGGGAATGGATGACAACGA
AATCAGTGAGACATGTCGAGATATAGACGAAACGAATGGGAAACCGTCTC
AGACGAATGCGCGCGAAACAACGATGACTGCCAGCAAAGACGACCTTGTG
CGTGTTCTCTTGGAATTTTTGGAAAAGCCGCAGCTGATTGGGGGGAGGGA
GAGTTTAGCTGAACGCGATAAAGAACTTCGACGACAAAAGAAGGCCGCGG
ACAGGGCCAGGGCACAGAAGGCAGCTTTGAAGAAGGCGGCTGAAAAGAAG
GCAGCGATGCTGAAGAAGAAGGAGGTGCGCGAAAGTGATGAGGATGGTGA
TGAAGATCTTGAAACTGGTGGTACAACATGGATCGAACTTGCGAGACAAA
AGAAAGAAGCTAAAGCACGAGAAGAAAGCGCGGCGAAACGAAACGGGTTC
CTGACAACGAACGGGCACGGGTAG
back to top

Coding sequence (CDS) from alignment at tig00000905_pilon:335822..337045-

>Ggra3425.t1 ID=Ggra3425.t1|Name=Ggra3425.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1224bp|location=Sequence derived from alignment at tig00000905_pilon:335822..337045- (Gracilaria gracilis GNS1m male)
ATGAAGCTGGAACCTACAAATCCTTCTTCTGATTGTGCTGCGTTGCGCTT
TTCGTCGGTTGCCAACGGCTCTTCTTCGCAGCGCCCTGATCAGAATGACC
TTCCCGACAAAGCGCCGCAGCATTCCAAGTCAAACGGCAGATTACATTCT
CCGACGAAGCGAGGCAAGCGTTCATTGGATGCAGAACACGATTCCGACGC
ACTACCTGCTACTGCTATCGAAACAAACGCGCGACAAACAGCCCCTCCAA
CCGATACACCGTCTGCCCCTGCATCGAGTTCCACGCAACGCCGTCAACCT
GGCACCCGCAAGCGCAAGAAGACAAGAATGTTTGAAATTGCCGCCCCGAC
GCACGTGCGTCGAGTGAGCACCGGCGCGCTCGGCGTGATTGGTCATGGAG
AAAAGCTTTGCAACATACCCAACATCATGTACAACATCGACAAAGCACAC
TCCAAGGATGCGGAGATAGAGTTTCTTCATCGTCTTTTATTCAACTTTGT
CGGCACCGCGCACACGAGGAAATCTAACATTCGATCGTTCTCAGGCTTTG
TTTTCGCGTCGGACAAGGACAGAAATCGTGTTCGTGACAAACTGATGCGC
GCCCACTTGAATATGGTCAGGAAGATGGCCAAGTTTTTGGATGTGCCTGT
GAACAAACCGCCCAGAGCTGGTGACCAAGCGAGTGGAGAGCCTTCTCTGA
ACGAGCGTATGAATGCTGGTCTGGGCGATCCTTCCCGGCTTTCACTAAAT
GGGGAGAGAAGGGCACTTCGTGCGGAGGCGATGGGAATGGATGACAACGA
AATCAGTGAGACATGTCGAGATATAGACGAAACGAATGGGAAACCGTCTC
AGACGAATGCGCGCGAAACAACGATGACTGCCAGCAAAGACGACCTTGTG
CGTGTTCTCTTGGAATTTTTGGAAAAGCCGCAGCTGATTGGGGGGAGGGA
GAGTTTAGCTGAACGCGATAAAGAACTTCGACGACAAAAGAAGGCCGCGG
ACAGGGCCAGGGCACAGAAGGCAGCTTTGAAGAAGGCGGCTGAAAAGAAG
GCAGCGATGCTGAAGAAGAAGGAGGTGCGCGAAAGTGATGAGGATGGTGA
TGAAGATCTTGAAACTGGTGGTACAACATGGATCGAACTTGCGAGACAAA
AGAAAGAAGCTAAAGCACGAGAAGAAAGCGCGGCGAAACGAAACGGGTTC
CTGACAACGAACGGGCACGGGTAG
back to top