Ggra8417.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra8417.t1
Unique Name	Ggra8417.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	508

Homology

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BLAST of Ggra8417.t1 vs. uniprot
Match: A0A2V3IFE0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFE0_9FLOR)

HSP 1 Score: 370 bits (949), Expect = 2.970e-121
Identity = 226/379 (59.63%), Postives = 272/379 (71.77%), Query Frame = 0

Query:    1 MRSPXXXXXXALQNVLVNRPGAT-GVVARRDNLLTAAVFAAEDAHEARSSRSRSVFARMQRKMSRLGDTLRRRSRSERRNATQLVPAHHVAFDRNGHASRAPQPPPASPAPSANVSDALASQVLLHRERILRVERENRHRRLAELSFDDIDDQVDEGELAVSSMREPTSRRVRQVGAREDDDTLLMLPRIASISFSAAGESTPKQPTAKVRQLPRVSGLMPTRASPRHPSSPMASASPVSSTARSASTASSGRRTLERQXXXXXXXXXXXXXXRRPSSSSNADSPRHRMYRLPTALFDRDVEKEMECAIVEVASDGESDSSSDR-QPQSVRERRIPGFSFDVSSSRAMSDVHHEMRMPRPHAFVRRANSSLYTPNTDSD 377
            MRSP      AL+NV+V RPGA  GVVARRDNLLT AVFAAE++HE RSSR  SV AR+QR++SR GD+LRRR+R ERR    LV +HHVAFDRNG+A++ P  PP S + S+N+SDALASQVLLHRERILR+ERE + R +  L+FDDID+     E AVSS+REP SRRVRQVGAREDDDTLLMLPR++SISFSAAGE    +P AKVRQLPR+SGLMPTRASPR PSS                  SSGR+   +               +   +   A+SP   MYRLPTAL +RDVE+EM+ AIVEVAS+G S++ +D  +P+S  ERRIPGF+FDV++ R MSDVHHEMR+PR   F RRANSSLY   T+S+
Sbjct:    1 MRSPPPP---ALKNVMVARPGANPGVVARRDNLLTTAVFAAEESHEPRSSRPLSVLARVQRRVSRWGDSLRRRTRQERRVPRHLVQSHHVAFDRNGNAAQPPPAPPQSESTSSNLSDALASQVLLHRERILRMEREKKERDVTSLTFDDIDEDDHHDERAVSSLREPWSRRVRQVGAREDDDTLLMLPRLSSISFSAAGEPVAVEP-AKVRQLPRLSGLMPTRASPRSPSSXXXXXXXXXXXXXXXXXXSSGRKRAAKPQPVQTPD-------KHHPNPFAANSPHPAMYRLPTALNNRDVEREMQQAIVEVASEGGSEADTDSPRPRSPCERRIPGFNFDVTNGRVMSDVHHEMRIPRSQPFTRRANSSLYATTTESE 368

The following BLAST results are available for this feature:

BLAST of Ggra8417.t1 vs. uniprot

BLAST of Ggra8417.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IFE0	2.970e-121	59.63	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 252..272
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 366..401
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..294
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 438..507
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 345..359
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 461..478
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..284
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 486..500
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 307..411

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000041_pilon	contig	tig00000041_pilon:510547..512070 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8417.t1	Ggra8417.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000041_pilon 510547..512070 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra8417.t1 ID=Ggra8417.t1|Name=Ggra8417.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=508bp
MRSPPPPPPPALQNVLVNRPGATGVVARRDNLLTAAVFAAEDAHEARSSR
SRSVFARMQRKMSRLGDTLRRRSRSERRNATQLVPAHHVAFDRNGHASRA
PQPPPASPAPSANVSDALASQVLLHRERILRVERENRHRRLAELSFDDID
DQVDEGELAVSSMREPTSRRVRQVGAREDDDTLLMLPRIASISFSAAGES
TPKQPTAKVRQLPRVSGLMPTRASPRHPSSPMASASPVSSTARSASTASS
GRRTLERQQQQQQQQQQQQQLDRRPSSSSNADSPRHRMYRLPTALFDRDV
EKEMECAIVEVASDGESDSSSDRQPQSVRERRIPGFSFDVSSSRAMSDVH
HEMRMPRPHAFVRRANSSLYTPNTDSDQEEQQQQQQQQSADSSSSAEAVD
EAEAQSSVMAMEKKKSMTRSCEMFEDDYLSFQGGFRSSSSERPHHHQSMS
SLLRSKRISSVTDSPSDDSDEANRQQGSSRRGRGRMLLLGSRRRRRHHSM
SAQRVGE*