Ggra8426.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8426.t1
Unique NameGgra8426.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length713
Homology
BLAST of Ggra8426.t1 vs. uniprot
Match: A0A2V3IFA8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFA8_9FLOR)

HSP 1 Score: 648 bits (1672), Expect = 1.010e-223
Identity = 345/716 (48.18%), Postives = 457/716 (63.83%), Query Frame = 0
Query:    1 MRIVAHNGPNWTRDSLATSPEHVAVAVRNTVLIYSHDATFQTELRATGGPSRIASLSFCDAPCLTSLLAVASQGGHVRIFDVHARRIFRVLVEGGPAC-----SAVRFLEKLPFRVLVVSDSLCVFDIVQQVHVVVRRELPFKHVFLVELIPNLSSYIILAGKRDKGA-CLCVANLYDENDIHVLVTGFAVHDIAIRHRPRHTHPYVMAVASAKLSYPMFFTSQDGIQWVKLPDAKPHVPQQIRTLDSYDKQKKPLCSKLLRTAVCWDVDQLLYTTDTRGAIYAWRVDDACQMRFFAQRHYAHSRQIFAVKTVTNNAIFSISMDRTLAKWCITHVAQPCLTLQWRSLRTQGPVTALAMSSHGQSANEVYISYSSASNSVACAKWIPGEHLFSLVAEACPSNPALGKRKRET-VSYVTTPDQLFDQSFSAVKVQSQTLFVFGFAEGKRGAFSITDGKVNVGALQSDHSATLRQAVIADVVKKSNKKTESTNKNFVPSALNERRKNREVGLSAPVSVLMPENVLKDDTVTGACLLPAKCHGEGEQMCFLLGSAKGRLYILFGGTEIRLLSQSLSVSSILCVEYEPTSSLIAVSDTNGLLITLKWSNTALSNQANGMELQVDTNSIHQYELPSAVRFMRWSESDQSEHSNVLVSSYLLLALQNGETLVWSSDTDGRLKRRAQIREHRGRVSGAVWFENRYILTAGEDGTVRFWEMDQLP 709
            M+I+AHNGPNWTRDSL  S   VA+AVR+TV++Y+HDA F  +LRATG  +R++S+ FC APCLTSLLAVA+  GHVR+FDV ARRIFRV+V+G         +AVRFL   P R+LVV+  L VF++V  V ++  R LPF HV LVE+IP  S ++++AGK    +  L V NLY+E+D+ V++TGF VHD+AI H+P   + YVMAV SAKLSYPMFFTS DGI W K P  KP +P  IRTL+SYDKQ KPL SK+LRTA CWD ++ L+TTD RG I+AWR+D   +M F A RHYAH+RQ F +K+V ++ ++S SMDRTLA+W +THVA+P L LQ+R  +                                          FS+VAEACP  PA GKRKRE  +SY+TTPD+L D++ S  K     LFVFG  EGKRG FSI DGKV V +L+++  ATL                       VPS +  R+  + V              L D+ VT  C+ P    G  E+ C  LGS +G LY L  G ++  LS++L++S+I  + YEP S ++AVSD+ G+L++LK S   LS+Q    E   D + + +Y+L S V  M+WSE   +++++   S+YLL A++NG+TLVWSSD  G LK RAQ+REHRGRV+ AVW EN+++ TAGEDGT+R WE ++LP
Sbjct:    1 MQILAHNGPNWTRDSLTISATTVAIAVRDTVVLYTHDANFFAQLRATGSSARVSSICFCSAPCLTSLLAVATSDGHVRVFDVEARRIFRVIVDGTKQSRKECNTAVRFLPCSPHRLLVVAHQLSVFELVHSVSLLFHRHLPFVHVHLVEVIPQRSDFVLIAGKDSSHSHSLRVINLYNESDVRVVLTGFPVHDVAIYHQPMQNNRYVMAVVSAKLSYPMFFTSSDGINWEKKPSMKPFIPDDIRTLESYDKQAKPLRSKMLRTAACWDANRTLFTTDPRGTIFAWRIDHDLKMHFLAHRHYAHARQTFTLKSVLDHGVYSTSMDRTLAQWRLTHVAKPFLALQFRDKQ------------------------------------------FSIVAEACPFGPAQGKRKREEPISYITTPDRLLDETISFRKGLPPCLFVFGRKEGKRGTFSIIDGKVQVCSLENERGATLAS--------------------LVPSVIPNRKNKKNV----------LNGFLDDENVTAVCIAPLVGEGVEERPCLFLGSERGALYYLSQGRKVDCLSEALAMSTICRMGYEPVSKVLAVSDSKGVLLSLKVSQD-LSDQTAAAEAVFDVHEVCRYDLSSLVHVMQWSEPPVTKNADNPHSTYLLTAMENGKTLVWSSDESGHLKIRAQLREHRGRVNRAVWHENKFMFTAGEDGTIRCWETERLP 643          
BLAST of Ggra8426.t1 vs. uniprot
Match: R7QS47 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QS47_CHOCR)

HSP 1 Score: 221 bits (563), Expect = 1.550e-58
Identity = 197/758 (25.99%), Postives = 349/758 (46.04%), Query Frame = 0
Query:    1 MRIVAHNGPNWTRDSLATSPEH--VAVAVRNTVLIYSHDATFQTELRATGGPSRIASLSFCDAPCLTSLLAVASQGGHVRIFDVHARRIFRVLVEGGP------ACSAVRFLEKLPFRVLVVSD--SLCV--FDIVQQVHVVVRRELPFKHVFLVELIPNLSSYIILAG----KRDKGACLCVANLYDENDIHVLVTGFAVHDI--AIRHRPRHTHPYVMAVASAKLSYPMFFTSQDGIQWVKLPDA-KPHVPQQIRTLDSYDKQKKPLCSKLLRTAVC---WDVDQLLYTTDTRGAIYAWRVDDACQMRFFAQRHYAHSRQIFAVKTVTNNAIF-SISMDRTLAKWCITHVA--QPCLTLQWRSLRTQGPVTALAMSSHGQ-SANEV----------YISYSSASNSVACAKWIPGEHLFSLVAEACPSNPALGKRKRETVSYVTTPDQLFDQSFSAVKVQSQTLFVFGFAEGKRGAFSITDGKV-----------NVGALQSDHSATLRQAVIADVVKKSNKKTESTNKNFVPSALNERRKNREVGLSAPVSVLMPENVLKDDTVTGACLLPAKCHGEGEQMCFLLGSAKGRLYILFGGTEIRLLSQSLSVSSILCVEYEPTSSLIAVSDTNGLLITLKWSNTALSNQANGMELQVDTN-SIHQYELPSAVRFMRWSESDQSEHSNVLVSSYLLLALQN-GETLVWSSDTDGRLKRRAQIREHRGRVSGAVWFENRYILTAGEDGTVRFWEMDQLP 709
            M+++AHNGPNW+  +LA  P H  +AV VRNTV+ Y  +  F  E+RA G   R+++LSFC+AP LT LLAV +  G VR++D   RRIFR + E         +  A+RF+ + P  +LVV++   +C+  ++  + +  V    L  + +  V L+P  S  +++AG    + ++G  + V ++       +   G  V+D+  ++R     +H + + + SA    P+ + S DG+ W  L  + +   P    T +    +++P   +      C   W   + +  ++ RG I  +++D   +++    R  AH RQIF++K +     F + SMDRT+A W +      +P + L+ R+ RT GP+ +LA+S   Q S  E+          ++S+++ S+++     I       ++ E  P    +  RKRET+  V       +  F   +    +LF+F  + G+ G   + +G++           N G  Q      +        +   N   E+        A  E R +     +  +S+   E   K    + AC +  +    G++    LG   G L +     E+ +   +  ++ +LC+ ++     I  SD +  ++T+     + S+ A G E Q       H   L   +R + WS S  +  +  +  S  L+A+ N GE  VW    +  L  RA I+   GRVS  +W     +L+ GEDG++R WE+++ P
Sbjct:    1 MQLLAHNGPNWSPGALAVQPCHDWIAVGVRNTVVFYDFEGRFIGEIRAVGR-GRVSALSFCEAPALTHLLAVGTSEGFVRVYDAQTRRIFRKVREPPQGKKKRLSIFALRFVNRFPNVLLVVTEPNQICMWKYETAENIRCVFDMFLDVRIITCVTLVPGSSELLLVAGLLQGEAEEGIAM-VIDVSRNGRPSIFHKGAIVNDLVTSVRDEASGSHHFFLLMVSAYCKRPVIYKSLDGVSWSALESSSQSSTPSWSDTTNETPLRERPSRDRTPSHYYCSGTWCGQRDIVVSNPRGTIVHYQIDGNNRLQEMTHRQSAHIRQIFSMKALKAKYQFVTSSMDRTVALWQLDSSPSDEPLIKLKCRTPRTNGPIKSLAVSLPNQPSETEMATGKGGRCNSFVSFAT-SDTITYLSCIENSTC-DVIGEISPIGNTV--RKRETIESVARIATRENGEFPN-RTDKTSLFLFATSNGRVGLIRLLNGELQFVFSRKRKCQNNGKEQKTRLLAIHGDTAITSIS-GNGDLETMMLPLSERAWTEARNSPMQWPAGSISLRAGETTPK---ASAACRIQQQ---NGDECFLCLGYEDGTLALFSISGELVVGPLATGLARVLCIAHKWDQHTIVASDGDCGIVTISTDGVSFSSHA-GSESQPQLRIRRHHQNLVDGIRCLTWSPSASTNDACAVERSTYLVAITNRGEIYVWIYQENEELVLRANIKSLYGRVSCCMWESYHCLLSGGEDGSIRRWELEKQP 743          
The following BLAST results are available for this feature:
BLAST of Ggra8426.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IFA81.010e-22348.18Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QS471.550e-5825.99Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 612..660
e-value: 480.0
score: 0.1
coord: 248..280
e-value: 400.0
score: 0.6
coord: 282..325
e-value: 150.0
score: 3.3
coord: 666..704
e-value: 5.9E-5
score: 32.5
coord: 553..594
e-value: 410.0
score: 0.5
coord: 37..81
e-value: 12.0
score: 10.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 673..712
score: 11.009724
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 472..712
e-value: 1.2E-13
score: 52.6
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 2..333
e-value: 2.5E-9
score: 38.4
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 691..705
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 673..712
score: 10.548323
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 20..357
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 257..707

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000041_piloncontigtig00000041_pilon:596777..598915 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8426.t1Ggra8426.t1Gracilaria gracilis GNS1m malemRNAtig00000041_pilon 596777..598915 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8426.t1 ID=Ggra8426.t1|Name=Ggra8426.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=713bp
MRIVAHNGPNWTRDSLATSPEHVAVAVRNTVLIYSHDATFQTELRATGGP
SRIASLSFCDAPCLTSLLAVASQGGHVRIFDVHARRIFRVLVEGGPACSA
VRFLEKLPFRVLVVSDSLCVFDIVQQVHVVVRRELPFKHVFLVELIPNLS
SYIILAGKRDKGACLCVANLYDENDIHVLVTGFAVHDIAIRHRPRHTHPY
VMAVASAKLSYPMFFTSQDGIQWVKLPDAKPHVPQQIRTLDSYDKQKKPL
CSKLLRTAVCWDVDQLLYTTDTRGAIYAWRVDDACQMRFFAQRHYAHSRQ
IFAVKTVTNNAIFSISMDRTLAKWCITHVAQPCLTLQWRSLRTQGPVTAL
AMSSHGQSANEVYISYSSASNSVACAKWIPGEHLFSLVAEACPSNPALGK
RKRETVSYVTTPDQLFDQSFSAVKVQSQTLFVFGFAEGKRGAFSITDGKV
NVGALQSDHSATLRQAVIADVVKKSNKKTESTNKNFVPSALNERRKNREV
GLSAPVSVLMPENVLKDDTVTGACLLPAKCHGEGEQMCFLLGSAKGRLYI
LFGGTEIRLLSQSLSVSSILCVEYEPTSSLIAVSDTNGLLITLKWSNTAL
SNQANGMELQVDTNSIHQYELPSAVRFMRWSESDQSEHSNVLVSSYLLLA
LQNGETLVWSSDTDGRLKRRAQIREHRGRVSGAVWFENRYILTAGEDGTV
RFWEMDQLPQSN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR036322WD40_repeat_dom_sf