Ggra10575.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10575.t1
Unique NameGgra10575.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:297156..298226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703690.1
Preferred nameYIPF6
PFAMsYip1
Max annot lvl2759|Eukaryota
GOsGO:0000138,GO:0002064,GO:0002065,GO:0002066,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005795,GO:0005797,GO:0005798,GO:0005801,GO:0005802,GO:0007275,GO:0008150,GO:0009888,GO:0009987,GO:0012505,GO:0030134,GO:0030135,GO:0030154,GO:0030855,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0035295,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048468,GO:0048565,GO:0048731,GO:0048856,GO:0048869,GO:0055123,GO:0060429,GO:0060575,GO:0060576,GO:0097708,GO:0098791
Evalue5.06e-72
EggNOG OGsCOG5080@1|root,KOG2946@2759|Eukaryota
Descriptionintestinal epithelial cell development
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10575Ggra10575Gracilaria gracilis GNS1m malegenetig00000904_pilon 297156..298226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10575.t1Ggra10575.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 297156..298226 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10575.t1.stop1Ggra10575.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 297156..297158 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10575.t1.CDS1Ggra10575.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 297156..297403 -
Ggra10575.t1.CDS2Ggra10575.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000904_pilon 297508..297665 -
Ggra10575.t1.CDS3Ggra10575.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000904_pilon 297742..297929 -
Ggra10575.t1.CDS4Ggra10575.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000904_pilon 298006..298050 -
Ggra10575.t1.CDS5Ggra10575.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000904_pilon 298146..298226 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10575.t1.exon1Ggra10575.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 297156..297403 -
Ggra10575.t1.exon2Ggra10575.t1.exon2Gracilaria gracilis GNS1m maleexontig00000904_pilon 297508..297665 -
Ggra10575.t1.exon3Ggra10575.t1.exon3Gracilaria gracilis GNS1m maleexontig00000904_pilon 297742..297929 -
Ggra10575.t1.exon4Ggra10575.t1.exon4Gracilaria gracilis GNS1m maleexontig00000904_pilon 298006..298050 -
Ggra10575.t1.exon5Ggra10575.t1.exon5Gracilaria gracilis GNS1m maleexontig00000904_pilon 298146..298226 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10575.t1.intron1Ggra10575.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000904_pilon 297404..297507 -
Ggra10575.t1.intron2Ggra10575.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000904_pilon 297666..297741 -
Ggra10575.t1.intron3Ggra10575.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000904_pilon 297930..298005 -
Ggra10575.t1.intron4Ggra10575.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000904_pilon 298051..298145 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10575.t1.start1Ggra10575.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 298224..298226 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10575.t1 ID=Ggra10575.t1|Name=Ggra10575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=240bp
MADLAQQFGENTIEEPVSETIFRDLRLVGRRLLMVMIPSISSSEKRAELR
DWDLWGPFFLCMSLAVMLSITAHDQASVVFSVIFVIVWVGAAVITVNGQL
LGGRLSFFQSVCLLGYCIFPILLSAVACWIINSFVKNDLAVIFRFVSVIV
SLLWSIWASSSFMTDARFPEGRKLLALYPVVLFYLSLAWIVLIGFQRGSV
PHAAVAEGTLPSNGTAAPVSEGSRMLLRDDYLNVRDRVL*
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spliced messenger RNA

>Ggra10575.t1 ID=Ggra10575.t1|Name=Ggra10575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000904_pilon:297156..298226- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGATTTAGCGCAACAATTCGGCGAGAATACCATCGAGGAACCCGT
ATCAGAAACCATTTTTCGCGATCTGCGACTCGTCGGACGACGCCTTCTGA
TGGTTATGATTCCATCAATAAGCTCCAGTGAGAAGCGTGCGGAACTTCGC
GATTGGGATCTGTGGGGCCCCTTCTTCCTGTGCATGTCCTTAGCTGTTAT
GCTCAGCATTACCGCACACGACCAAGCTTCAGTTGTTTTCTCAGTCATAT
TTGTTATAGTCTGGGTCGGTGCTGCTGTCATTACCGTCAATGGACAACTT
TTAGGCGGAAGACTCTCTTTCTTTCAAAGCGTTTGTCTTCTGGGATACTG
TATCTTTCCCATTCTTCTCAGTGCCGTTGCTTGTTGGATAATTAACTCAT
TTGTCAAGAACGACCTAGCAGTAATATTTCGCTTTGTGTCAGTTATTGTA
TCGCTTCTCTGGTCAATATGGGCCTCCTCTAGTTTCATGACTGACGCCAG
ATTCCCAGAAGGTCGAAAGTTGTTGGCCTTGTACCCCGTGGTTCTTTTCT
ATCTCTCTCTCGCGTGGATTGTGCTAATTGGTTTCCAACGTGGATCTGTC
CCACATGCAGCCGTCGCGGAAGGAACTCTCCCGAGTAATGGAACTGCTGC
ACCCGTTTCTGAAGGAAGTCGCATGCTTTTGCGAGATGATTATCTCAATG
TACGAGATCGTGTGCTTTAA
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protein sequence of Ggra10575.t1

>Ggra10575.t1 ID=Ggra10575.t1|Name=Ggra10575.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=240bp
MADLAQQFGENTIEEPVSETIFRDLRLVGRRLLMVMIPSISSSEKRAELR
DWDLWGPFFLCMSLAVMLSITAHDQASVVFSVIFVIVWVGAAVITVNGQL
LGGRLSFFQSVCLLGYCIFPILLSAVACWIINSFVKNDLAVIFRFVSVIV
SLLWSIWASSSFMTDARFPEGRKLLALYPVVLFYLSLAWIVLIGFQRGSV
PHAAVAEGTLPSNGTAAPVSEGSRMLLRDDYLNVRDRVL*
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mRNA from alignment at tig00000904_pilon:297156..298226-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10575.t1 ID=Ggra10575.t1|Name=Ggra10575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00000904_pilon:297156..298226- (Gracilaria gracilis GNS1m male)
ATGGCCGATTTAGCGCAACAATTCGGCGAGAATACCATCGAGGAACCCGT
ATCAGAAACCATTTTTCGCGATCTGCGACTCGTACGTGTATACTTTCCGC
CACACCAAACGTGCAAACCGATATCCACCACCATTTCTAACTCGCTACGC
GCTACTTGCGAAACGGCTCAACATAGGTCGGACGACGCCTTCTGATGGTT
ATGATTCCATCAATAAGCTCCGTAAGGATATTCATTTCATTACTTCTACC
AAAACAATAGTCGAACAATGTTGGTTACTGACTAATTATCGTTTTAGAGT
GAGAAGCGTGCGGAACTTCGCGATTGGGATCTGTGGGGCCCCTTCTTCCT
GTGCATGTCCTTAGCTGTTATGCTCAGCATTACCGCACACGACCAAGCTT
CAGTTGTTTTCTCAGTCATATTTGTTATAGTCTGGGTCGGTGCTGCTGTC
ATTACCGTCAATGGACAACTTTTAGGCGGAAGACTGTATGTGATGCTCTC
TAATATCAAATTGCGTTTCGTCTGCGAGATTACTAACGGCAACCATCTTC
TTGCCTTGCAGCTCTTTCTTTCAAAGCGTTTGTCTTCTGGGATACTGTAT
CTTTCCCATTCTTCTCAGTGCCGTTGCTTGTTGGATAATTAACTCATTTG
TCAAGAACGACCTAGCAGTAATATTTCGCTTTGTGTCAGTTATTGTATCG
CTTCTCTGGTCAATATGGGGTAAGGCTTGTATTCTTGTCTGCGCACAATG
CTCACCGCGACAGCAAACAAATGTCTAACCAGTACGACGACGTTTTCTCC
TCTTTCTTTTATACCCGCGGCAGCCTCCTCTAGTTTCATGACTGACGCCA
GATTCCCAGAAGGTCGAAAGTTGTTGGCCTTGTACCCCGTGGTTCTTTTC
TATCTCTCTCTCGCGTGGATTGTGCTAATTGGTTTCCAACGTGGATCTGT
CCCACATGCAGCCGTCGCGGAAGGAACTCTCCCGAGTAATGGAACTGCTG
CACCCGTTTCTGAAGGAAGTCGCATGCTTTTGCGAGATGATTATCTCAAT
GTACGAGATCGTGTGCTTTAA
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Coding sequence (CDS) from alignment at tig00000904_pilon:297156..298226-

>Ggra10575.t1 ID=Ggra10575.t1|Name=Ggra10575.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=720bp|location=Sequence derived from alignment at tig00000904_pilon:297156..298226- (Gracilaria gracilis GNS1m male)
ATGGCCGATTTAGCGCAACAATTCGGCGAGAATACCATCGAGGAACCCGT
ATCAGAAACCATTTTTCGCGATCTGCGACTCGTCGGACGACGCCTTCTGA
TGGTTATGATTCCATCAATAAGCTCCAGTGAGAAGCGTGCGGAACTTCGC
GATTGGGATCTGTGGGGCCCCTTCTTCCTGTGCATGTCCTTAGCTGTTAT
GCTCAGCATTACCGCACACGACCAAGCTTCAGTTGTTTTCTCAGTCATAT
TTGTTATAGTCTGGGTCGGTGCTGCTGTCATTACCGTCAATGGACAACTT
TTAGGCGGAAGACTCTCTTTCTTTCAAAGCGTTTGTCTTCTGGGATACTG
TATCTTTCCCATTCTTCTCAGTGCCGTTGCTTGTTGGATAATTAACTCAT
TTGTCAAGAACGACCTAGCAGTAATATTTCGCTTTGTGTCAGTTATTGTA
TCGCTTCTCTGGTCAATATGGGCCTCCTCTAGTTTCATGACTGACGCCAG
ATTCCCAGAAGGTCGAAAGTTGTTGGCCTTGTACCCCGTGGTTCTTTTCT
ATCTCTCTCTCGCGTGGATTGTGCTAATTGGTTTCCAACGTGGATCTGTC
CCACATGCAGCCGTCGCGGAAGGAACTCTCCCGAGTAATGGAACTGCTGC
ACCCGTTTCTGAAGGAAGTCGCATGCTTTTGCGAGATGATTATCTCAATG
TACGAGATCGTGTGCTTTAA
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