Ggra10562.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10562.t1
Unique NameGgra10562.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length324
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:204542..205513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FMY0
Max annot lvl2759|Eukaryota
Evalue9.37e-11
EggNOG OGs2EM9Y@1|root,2SQZZ@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10562Ggra10562Gracilaria gracilis GNS1m malegenetig00000904_pilon 204542..205513 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10562.t1.start1Ggra10562.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 204542..204544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10562.t1.CDS1Ggra10562.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 204542..205513 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10562.t1.exon1Ggra10562.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 204542..205513 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10562.t1.stop1Ggra10562.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 205511..205513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10562.t1Ggra10562.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 204542..205513 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10562.t1 ID=Ggra10562.t1|Name=Ggra10562.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=324bp
MGDSSGPDSGSSEVDLLITGHPGLILCAGIHPQFLDRTGENWNQRLERNT
NPQRRRLLSLSFWMSLSPMTAFVPTLPIFHPQQSIPKTKHIPTKTSALRH
RQRPSIAPWFVCVQQKDAPRPKSGVSDMKQKLFTKLQSLDRGLDIDPDAE
TMTAEEADVEEAIEVLEDNYPPQLPTRDQRLSGRWRLAYTSSAITRYFGG
VTGLQRLLPNATVGDITQTIDMEDGTSTFEEHVTFELPVIGNEVSLDVLV
QGRLRATNEERQIWEPENVKCGFLSWFADSWKTFRAFQIADITYLDDDLR
VTRGQTGSVAVFRKTAENNQEDT*
back to top

spliced messenger RNA

>Ggra10562.t1 ID=Ggra10562.t1|Name=Ggra10562.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00000904_pilon:204542..205513+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGATAGTAGCGGCCCCGATAGTGGCAGCTCCGAGGTTGATTTGCT
CATCACAGGGCATCCAGGCCTCATCCTGTGCGCTGGTATCCATCCCCAAT
TCCTCGATCGCACTGGGGAGAATTGGAACCAAAGACTTGAAAGGAATACT
AATCCACAGCGACGAAGACTTCTGTCATTGTCATTCTGGATGTCGCTCTC
CCCAATGACAGCGTTTGTTCCGACGCTTCCGATTTTTCATCCCCAGCAAA
GCATCCCAAAAACAAAACACATCCCAACCAAAACATCTGCTTTGCGTCAT
CGTCAACGACCTTCAATTGCGCCATGGTTCGTTTGCGTGCAACAGAAAGA
CGCACCACGTCCTAAATCTGGGGTGTCGGACATGAAACAAAAGCTTTTCA
CAAAGCTACAAAGCTTGGACCGGGGACTGGACATTGACCCAGACGCCGAG
ACAATGACTGCGGAAGAAGCTGACGTAGAGGAAGCAATCGAAGTGCTTGA
GGACAATTACCCACCACAGTTACCAACAAGAGACCAGAGACTGTCTGGGC
GATGGCGTCTAGCATATACATCCAGCGCCATCACTCGATACTTTGGCGGC
GTCACGGGTCTTCAGCGCTTACTGCCGAACGCCACCGTCGGTGACATTAC
TCAAACTATTGACATGGAAGATGGAACGAGTACCTTCGAGGAGCATGTAA
CGTTCGAACTTCCCGTCATAGGAAACGAAGTTTCTTTGGATGTTCTAGTA
CAAGGACGACTAAGAGCGACAAATGAAGAGCGTCAAATCTGGGAGCCGGA
AAATGTGAAGTGTGGTTTCCTCAGCTGGTTCGCAGATAGCTGGAAAACCT
TTCGCGCTTTTCAGATTGCTGACATTACGTATCTCGATGACGACTTACGC
GTAACACGGGGCCAAACAGGAAGCGTGGCCGTTTTCCGGAAAACAGCAGA
GAACAATCAGGAAGACACATAG
back to top

protein sequence of Ggra10562.t1

>Ggra10562.t1 ID=Ggra10562.t1|Name=Ggra10562.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=324bp
MGDSSGPDSGSSEVDLLITGHPGLILCAGIHPQFLDRTGENWNQRLERNT
NPQRRRLLSLSFWMSLSPMTAFVPTLPIFHPQQSIPKTKHIPTKTSALRH
RQRPSIAPWFVCVQQKDAPRPKSGVSDMKQKLFTKLQSLDRGLDIDPDAE
TMTAEEADVEEAIEVLEDNYPPQLPTRDQRLSGRWRLAYTSSAITRYFGG
VTGLQRLLPNATVGDITQTIDMEDGTSTFEEHVTFELPVIGNEVSLDVLV
QGRLRATNEERQIWEPENVKCGFLSWFADSWKTFRAFQIADITYLDDDLR
VTRGQTGSVAVFRKTAENNQEDT*
back to top

mRNA from alignment at tig00000904_pilon:204542..205513+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10562.t1 ID=Ggra10562.t1|Name=Ggra10562.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00000904_pilon:204542..205513+ (Gracilaria gracilis GNS1m male)
ATGGGAGATAGTAGCGGCCCCGATAGTGGCAGCTCCGAGGTTGATTTGCT
CATCACAGGGCATCCAGGCCTCATCCTGTGCGCTGGTATCCATCCCCAAT
TCCTCGATCGCACTGGGGAGAATTGGAACCAAAGACTTGAAAGGAATACT
AATCCACAGCGACGAAGACTTCTGTCATTGTCATTCTGGATGTCGCTCTC
CCCAATGACAGCGTTTGTTCCGACGCTTCCGATTTTTCATCCCCAGCAAA
GCATCCCAAAAACAAAACACATCCCAACCAAAACATCTGCTTTGCGTCAT
CGTCAACGACCTTCAATTGCGCCATGGTTCGTTTGCGTGCAACAGAAAGA
CGCACCACGTCCTAAATCTGGGGTGTCGGACATGAAACAAAAGCTTTTCA
CAAAGCTACAAAGCTTGGACCGGGGACTGGACATTGACCCAGACGCCGAG
ACAATGACTGCGGAAGAAGCTGACGTAGAGGAAGCAATCGAAGTGCTTGA
GGACAATTACCCACCACAGTTACCAACAAGAGACCAGAGACTGTCTGGGC
GATGGCGTCTAGCATATACATCCAGCGCCATCACTCGATACTTTGGCGGC
GTCACGGGTCTTCAGCGCTTACTGCCGAACGCCACCGTCGGTGACATTAC
TCAAACTATTGACATGGAAGATGGAACGAGTACCTTCGAGGAGCATGTAA
CGTTCGAACTTCCCGTCATAGGAAACGAAGTTTCTTTGGATGTTCTAGTA
CAAGGACGACTAAGAGCGACAAATGAAGAGCGTCAAATCTGGGAGCCGGA
AAATGTGAAGTGTGGTTTCCTCAGCTGGTTCGCAGATAGCTGGAAAACCT
TTCGCGCTTTTCAGATTGCTGACATTACGTATCTCGATGACGACTTACGC
GTAACACGGGGCCAAACAGGAAGCGTGGCCGTTTTCCGGAAAACAGCAGA
GAACAATCAGGAAGACACATAG
back to top

Coding sequence (CDS) from alignment at tig00000904_pilon:204542..205513+

>Ggra10562.t1 ID=Ggra10562.t1|Name=Ggra10562.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=972bp|location=Sequence derived from alignment at tig00000904_pilon:204542..205513+ (Gracilaria gracilis GNS1m male)
ATGGGAGATAGTAGCGGCCCCGATAGTGGCAGCTCCGAGGTTGATTTGCT
CATCACAGGGCATCCAGGCCTCATCCTGTGCGCTGGTATCCATCCCCAAT
TCCTCGATCGCACTGGGGAGAATTGGAACCAAAGACTTGAAAGGAATACT
AATCCACAGCGACGAAGACTTCTGTCATTGTCATTCTGGATGTCGCTCTC
CCCAATGACAGCGTTTGTTCCGACGCTTCCGATTTTTCATCCCCAGCAAA
GCATCCCAAAAACAAAACACATCCCAACCAAAACATCTGCTTTGCGTCAT
CGTCAACGACCTTCAATTGCGCCATGGTTCGTTTGCGTGCAACAGAAAGA
CGCACCACGTCCTAAATCTGGGGTGTCGGACATGAAACAAAAGCTTTTCA
CAAAGCTACAAAGCTTGGACCGGGGACTGGACATTGACCCAGACGCCGAG
ACAATGACTGCGGAAGAAGCTGACGTAGAGGAAGCAATCGAAGTGCTTGA
GGACAATTACCCACCACAGTTACCAACAAGAGACCAGAGACTGTCTGGGC
GATGGCGTCTAGCATATACATCCAGCGCCATCACTCGATACTTTGGCGGC
GTCACGGGTCTTCAGCGCTTACTGCCGAACGCCACCGTCGGTGACATTAC
TCAAACTATTGACATGGAAGATGGAACGAGTACCTTCGAGGAGCATGTAA
CGTTCGAACTTCCCGTCATAGGAAACGAAGTTTCTTTGGATGTTCTAGTA
CAAGGACGACTAAGAGCGACAAATGAAGAGCGTCAAATCTGGGAGCCGGA
AAATGTGAAGTGTGGTTTCCTCAGCTGGTTCGCAGATAGCTGGAAAACCT
TTCGCGCTTTTCAGATTGCTGACATTACGTATCTCGATGACGACTTACGC
GTAACACGGGGCCAAACAGGAAGCGTGGCCGTTTTCCGGAAAACAGCAGA
GAACAATCAGGAAGACACATAG
back to top