Ggra2104.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2104.t1
Unique NameGgra2104.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:299929..300801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2104Ggra2104Gracilaria gracilis GNS1m malegenetig00000900_pilon 299929..300801 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2104.t1.start1Ggra2104.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 299929..299931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2104.t1.CDS1Ggra2104.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 299929..300801 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2104.t1.exon1Ggra2104.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 299929..300801 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2104.t1.stop1Ggra2104.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 300799..300801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2104.t1Ggra2104.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 299929..300801 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2104.t1 ID=Ggra2104.t1|Name=Ggra2104.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=291bp
MAAVTSPSPAAPHSTLPPLKRPFGAHAVDALPPSPPPAKRPRNYWDVVLD
VAAVSAHHPPPVVRALPPLPPLFPARADQRLAASHAPPPHSPHSPHLPFE
SSPLSQPPASSAVAQPPPLPALRAALPDAARVRAVQPAKPFPCTSCPSTF
ARANHLRLHVRTIHEKAKPFACEQCPATFGHVSSKYRHFRTVHLKRRDFA
CDRCGQTFAERSAVFKHCRTVHEGSRPYPCHICGFRFHFKLHLTQHIATV
HEKQRPHQCTVCGACFGQRSSLNRHSRQIHGLVTKRVTPS*
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spliced messenger RNA

>Ggra2104.t1 ID=Ggra2104.t1|Name=Ggra2104.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000900_pilon:299929..300801+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCGTCACGTCGCCCTCGCCCGCCGCGCCGCACTCAACGCTGCC
GCCGCTCAAGCGCCCGTTCGGCGCGCACGCCGTCGACGCGCTGCCGCCCT
CGCCGCCGCCCGCAAAGCGCCCCCGCAACTACTGGGACGTCGTGCTTGAC
GTCGCCGCCGTCTCCGCCCACCACCCGCCGCCCGTCGTGCGCGCGCTGCC
CCCGCTACCCCCGCTGTTCCCCGCGCGCGCCGACCAACGGCTCGCCGCGT
CGCACGCGCCGCCGCCGCACTCTCCGCACTCGCCACACCTGCCGTTCGAG
TCGTCGCCGCTGTCACAGCCGCCTGCCTCCTCCGCCGTCGCACAGCCGCC
GCCGCTGCCCGCGCTGCGCGCCGCGCTGCCGGACGCTGCGCGCGTGCGCG
CCGTGCAGCCCGCAAAGCCGTTCCCGTGCACCAGCTGCCCGTCCACGTTT
GCGCGCGCCAACCACCTGCGCCTGCACGTGCGCACCATCCATGAGAAGGC
AAAGCCGTTTGCTTGCGAGCAGTGCCCGGCTACTTTTGGACACGTTTCGT
CAAAGTATCGCCACTTTCGCACCGTGCACCTCAAGCGAAGGGACTTTGCG
TGCGATCGCTGTGGACAGACGTTTGCCGAACGCTCGGCCGTGTTCAAGCA
TTGCCGCACCGTGCACGAGGGCTCGCGTCCGTACCCGTGCCACATCTGCG
GCTTTCGCTTTCACTTCAAGTTGCATCTCACGCAGCATATCGCTACCGTG
CACGAGAAGCAGAGGCCGCATCAATGCACCGTGTGCGGCGCTTGTTTTGG
ACAGAGGAGCAGTCTCAACAGGCATTCTCGTCAGATCCATGGGCTTGTGA
CCAAGCGCGTTACGCCGTCGTGA
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protein sequence of Ggra2104.t1

>Ggra2104.t1 ID=Ggra2104.t1|Name=Ggra2104.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=291bp
MAAVTSPSPAAPHSTLPPLKRPFGAHAVDALPPSPPPAKRPRNYWDVVLD
VAAVSAHHPPPVVRALPPLPPLFPARADQRLAASHAPPPHSPHSPHLPFE
SSPLSQPPASSAVAQPPPLPALRAALPDAARVRAVQPAKPFPCTSCPSTF
ARANHLRLHVRTIHEKAKPFACEQCPATFGHVSSKYRHFRTVHLKRRDFA
CDRCGQTFAERSAVFKHCRTVHEGSRPYPCHICGFRFHFKLHLTQHIATV
HEKQRPHQCTVCGACFGQRSSLNRHSRQIHGLVTKRVTPS*
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mRNA from alignment at tig00000900_pilon:299929..300801+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2104.t1 ID=Ggra2104.t1|Name=Ggra2104.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000900_pilon:299929..300801+ (Gracilaria gracilis GNS1m male)
ATGGCCGCCGTCACGTCGCCCTCGCCCGCCGCGCCGCACTCAACGCTGCC
GCCGCTCAAGCGCCCGTTCGGCGCGCACGCCGTCGACGCGCTGCCGCCCT
CGCCGCCGCCCGCAAAGCGCCCCCGCAACTACTGGGACGTCGTGCTTGAC
GTCGCCGCCGTCTCCGCCCACCACCCGCCGCCCGTCGTGCGCGCGCTGCC
CCCGCTACCCCCGCTGTTCCCCGCGCGCGCCGACCAACGGCTCGCCGCGT
CGCACGCGCCGCCGCCGCACTCTCCGCACTCGCCACACCTGCCGTTCGAG
TCGTCGCCGCTGTCACAGCCGCCTGCCTCCTCCGCCGTCGCACAGCCGCC
GCCGCTGCCCGCGCTGCGCGCCGCGCTGCCGGACGCTGCGCGCGTGCGCG
CCGTGCAGCCCGCAAAGCCGTTCCCGTGCACCAGCTGCCCGTCCACGTTT
GCGCGCGCCAACCACCTGCGCCTGCACGTGCGCACCATCCATGAGAAGGC
AAAGCCGTTTGCTTGCGAGCAGTGCCCGGCTACTTTTGGACACGTTTCGT
CAAAGTATCGCCACTTTCGCACCGTGCACCTCAAGCGAAGGGACTTTGCG
TGCGATCGCTGTGGACAGACGTTTGCCGAACGCTCGGCCGTGTTCAAGCA
TTGCCGCACCGTGCACGAGGGCTCGCGTCCGTACCCGTGCCACATCTGCG
GCTTTCGCTTTCACTTCAAGTTGCATCTCACGCAGCATATCGCTACCGTG
CACGAGAAGCAGAGGCCGCATCAATGCACCGTGTGCGGCGCTTGTTTTGG
ACAGAGGAGCAGTCTCAACAGGCATTCTCGTCAGATCCATGGGCTTGTGA
CCAAGCGCGTTACGCCGTCGTGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:299929..300801+

>Ggra2104.t1 ID=Ggra2104.t1|Name=Ggra2104.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00000900_pilon:299929..300801+ (Gracilaria gracilis GNS1m male)
ATGGCCGCCGTCACGTCGCCCTCGCCCGCCGCGCCGCACTCAACGCTGCC
GCCGCTCAAGCGCCCGTTCGGCGCGCACGCCGTCGACGCGCTGCCGCCCT
CGCCGCCGCCCGCAAAGCGCCCCCGCAACTACTGGGACGTCGTGCTTGAC
GTCGCCGCCGTCTCCGCCCACCACCCGCCGCCCGTCGTGCGCGCGCTGCC
CCCGCTACCCCCGCTGTTCCCCGCGCGCGCCGACCAACGGCTCGCCGCGT
CGCACGCGCCGCCGCCGCACTCTCCGCACTCGCCACACCTGCCGTTCGAG
TCGTCGCCGCTGTCACAGCCGCCTGCCTCCTCCGCCGTCGCACAGCCGCC
GCCGCTGCCCGCGCTGCGCGCCGCGCTGCCGGACGCTGCGCGCGTGCGCG
CCGTGCAGCCCGCAAAGCCGTTCCCGTGCACCAGCTGCCCGTCCACGTTT
GCGCGCGCCAACCACCTGCGCCTGCACGTGCGCACCATCCATGAGAAGGC
AAAGCCGTTTGCTTGCGAGCAGTGCCCGGCTACTTTTGGACACGTTTCGT
CAAAGTATCGCCACTTTCGCACCGTGCACCTCAAGCGAAGGGACTTTGCG
TGCGATCGCTGTGGACAGACGTTTGCCGAACGCTCGGCCGTGTTCAAGCA
TTGCCGCACCGTGCACGAGGGCTCGCGTCCGTACCCGTGCCACATCTGCG
GCTTTCGCTTTCACTTCAAGTTGCATCTCACGCAGCATATCGCTACCGTG
CACGAGAAGCAGAGGCCGCATCAATGCACCGTGTGCGGCGCTTGTTTTGG
ACAGAGGAGCAGTCTCAACAGGCATTCTCGTCAGATCCATGGGCTTGTGA
CCAAGCGCGTTACGCCGTCGTGA
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