Ggra2152.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2152.t1
Unique NameGgra2152.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length181
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:444592..445134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702735.1
Preferred nameRPL20B
PFAMsRibosomal_L18A
Max annot lvl2759|Eukaryota
KEGG koko:K02882
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000003,GO:0000902,GO:0000904,GO:0002181,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010154,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0016049,GO:0019538,GO:0022414,GO:0022625,GO:0022626,GO:0030054,GO:0030154,GO:0031090,GO:0032501,GO:0032502,GO:0032989,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044706,GO:0048316,GO:0048468,GO:0048588,GO:0048589,GO:0048608,GO:0048731,GO:0048856,GO:0048868,GO:0048869,GO:0051704,GO:0055044,GO:0060560,GO:0061458,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.16e-68
EggNOG OGsCOG2157@1|root,KOG0829@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2152Ggra2152Gracilaria gracilis GNS1m malegenetig00000900_pilon 444592..445134 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2152.t1.stop1Ggra2152.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 444592..444594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2152.t1.CDS1Ggra2152.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 444592..445134 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2152.t1.exon1Ggra2152.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 444592..445134 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2152.t1.start1Ggra2152.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 445132..445134 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2152.t1Ggra2152.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 444592..445134 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2152.t1 ID=Ggra2152.t1|Name=Ggra2152.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=181bp
MTWLHQYHVVGRMVPGKGGSKPDEDTAVYRMRIFAPNPVVAKSRFWYFLR
KLKRVKKANGEILAVNEIHEKDISTVKNIGVWLRYKSRSDTVNMYKEYRH
VSMTGAVEQMYMEMSGRHRARWSSIQVLKVKEITEEDVRRPNTLQFLDPE
LRFPLPHARPRASTKSKRATFLAYRPSTCA*
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spliced messenger RNA

>Ggra2152.t1 ID=Ggra2152.t1|Name=Ggra2152.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=543bp|location=Sequence derived from alignment at tig00000900_pilon:444592..445134- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTGGCTACATCAGTACCATGTGGTGGGACGCATGGTTCCGGGAAA
AGGAGGATCCAAGCCCGATGAGGACACCGCCGTCTACCGCATGAGAATCT
TCGCCCCCAATCCGGTGGTGGCAAAGTCTCGCTTCTGGTACTTTCTCAGA
AAGCTCAAGAGAGTCAAGAAAGCAAACGGAGAAATTCTCGCCGTCAACGA
GATCCACGAGAAGGACATTTCCACCGTGAAGAACATTGGTGTTTGGTTGC
GATACAAGTCGCGCTCTGATACCGTCAACATGTACAAGGAGTACCGTCAT
GTGTCAATGACCGGCGCCGTTGAGCAGATGTACATGGAGATGAGTGGACG
TCATCGTGCGCGTTGGTCCTCTATCCAGGTGCTCAAGGTGAAGGAGATCA
CCGAAGAGGACGTGCGCCGACCGAATACCCTGCAGTTCCTCGACCCAGAG
CTCAGGTTCCCGCTGCCTCACGCTCGTCCGCGTGCGTCTACCAAGAGCAA
ACGTGCCACCTTTTTGGCCTACAGGCCCAGCACGTGCGCTTAA
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protein sequence of Ggra2152.t1

>Ggra2152.t1 ID=Ggra2152.t1|Name=Ggra2152.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=181bp
MTWLHQYHVVGRMVPGKGGSKPDEDTAVYRMRIFAPNPVVAKSRFWYFLR
KLKRVKKANGEILAVNEIHEKDISTVKNIGVWLRYKSRSDTVNMYKEYRH
VSMTGAVEQMYMEMSGRHRARWSSIQVLKVKEITEEDVRRPNTLQFLDPE
LRFPLPHARPRASTKSKRATFLAYRPSTCA*
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mRNA from alignment at tig00000900_pilon:444592..445134-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2152.t1 ID=Ggra2152.t1|Name=Ggra2152.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=543bp|location=Sequence derived from alignment at tig00000900_pilon:444592..445134- (Gracilaria gracilis GNS1m male)
ATGACCTGGCTACATCAGTACCATGTGGTGGGACGCATGGTTCCGGGAAA
AGGAGGATCCAAGCCCGATGAGGACACCGCCGTCTACCGCATGAGAATCT
TCGCCCCCAATCCGGTGGTGGCAAAGTCTCGCTTCTGGTACTTTCTCAGA
AAGCTCAAGAGAGTCAAGAAAGCAAACGGAGAAATTCTCGCCGTCAACGA
GATCCACGAGAAGGACATTTCCACCGTGAAGAACATTGGTGTTTGGTTGC
GATACAAGTCGCGCTCTGATACCGTCAACATGTACAAGGAGTACCGTCAT
GTGTCAATGACCGGCGCCGTTGAGCAGATGTACATGGAGATGAGTGGACG
TCATCGTGCGCGTTGGTCCTCTATCCAGGTGCTCAAGGTGAAGGAGATCA
CCGAAGAGGACGTGCGCCGACCGAATACCCTGCAGTTCCTCGACCCAGAG
CTCAGGTTCCCGCTGCCTCACGCTCGTCCGCGTGCGTCTACCAAGAGCAA
ACGTGCCACCTTTTTGGCCTACAGGCCCAGCACGTGCGCTTAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:444592..445134-

>Ggra2152.t1 ID=Ggra2152.t1|Name=Ggra2152.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=543bp|location=Sequence derived from alignment at tig00000900_pilon:444592..445134- (Gracilaria gracilis GNS1m male)
ATGACCTGGCTACATCAGTACCATGTGGTGGGACGCATGGTTCCGGGAAA
AGGAGGATCCAAGCCCGATGAGGACACCGCCGTCTACCGCATGAGAATCT
TCGCCCCCAATCCGGTGGTGGCAAAGTCTCGCTTCTGGTACTTTCTCAGA
AAGCTCAAGAGAGTCAAGAAAGCAAACGGAGAAATTCTCGCCGTCAACGA
GATCCACGAGAAGGACATTTCCACCGTGAAGAACATTGGTGTTTGGTTGC
GATACAAGTCGCGCTCTGATACCGTCAACATGTACAAGGAGTACCGTCAT
GTGTCAATGACCGGCGCCGTTGAGCAGATGTACATGGAGATGAGTGGACG
TCATCGTGCGCGTTGGTCCTCTATCCAGGTGCTCAAGGTGAAGGAGATCA
CCGAAGAGGACGTGCGCCGACCGAATACCCTGCAGTTCCTCGACCCAGAG
CTCAGGTTCCCGCTGCCTCACGCTCGTCCGCGTGCGTCTACCAAGAGCAA
ACGTGCCACCTTTTTGGCCTACAGGCCCAGCACGTGCGCTTAA
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