Ggra2079.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2079.t1
Unique NameGgra2079.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length290
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:115432..116301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog643473.KB235931_gene4699
Preferred namechlG
PFAMsUbiA
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00020
KEGG koko:K04040
KEGG ReactionR06284,R09067,R11514,R11517
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Evalue2.52e-147
EggNOG OGsCOG0382@1|root,COG0382@2|Bacteria,1G2BD@1117|Cyanobacteria,1HJH8@1161|Nostocales
EC2.5.1.133,2.5.1.62
DescriptionTIGRFAM bacteriochlorophyll chlorophyll synthetase
COG categoryH
BiGG ReactioniJN678.chlG
BRITEko00000,ko00001,ko01000,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2079Ggra2079Gracilaria gracilis GNS1m malegenetig00000900_pilon 115432..116301 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2079.t1.start1Ggra2079.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 115432..115434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2079.t1.CDS1Ggra2079.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 115432..116301 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2079.t1.exon1Ggra2079.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 115432..116301 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2079.t1.stop1Ggra2079.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 116299..116301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2079.t1Ggra2079.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 115432..116301 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2079.t1 ID=Ggra2079.t1|Name=Ggra2079.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=290bp
MKPVTWVPLLWGVTCGAAASGNYTWTPEHVAQAAACMVLAGPLLTGYTQT
LNDWCDRDIDAINEPQRPIPSGAISESEVKTQLLALLFAGIALSVGIDVW
THHDWPVNTVLTLFGSFIAYIYSEPPLKLKQNGWLGCYALGASYISLPWW
CGHAAFGQLDWKVMVLTLFYSFAGLGIAIVNDFKSVEGDRATGMQSLPVM
FGIDKAKWICAGMIDVFQLLVAAVIYSIGEQKYAAGILALVIPQIVLQFQ
YLLKDPVKYDVKYQAAAQPFLVIGILVTALAVGHHGPLM*
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spliced messenger RNA

>Ggra2079.t1 ID=Ggra2079.t1|Name=Ggra2079.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000900_pilon:115432..116301+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCCGTCACCTGGGTGCCGCTGCTGTGGGGCGTCACCTGCGGCGC
CGCCGCCTCCGGCAACTATACGTGGACGCCGGAACACGTCGCGCAGGCCG
CCGCCTGCATGGTGCTGGCGGGGCCGTTGTTGACCGGCTACACGCAGACG
TTGAATGACTGGTGTGACCGCGACATCGATGCCATCAATGAGCCGCAGCG
ACCCATTCCGTCCGGCGCCATCTCGGAGAGCGAGGTCAAGACGCAGTTGC
TTGCACTGTTATTCGCGGGCATTGCATTGAGCGTTGGTATCGATGTGTGG
ACACACCACGATTGGCCCGTCAATACCGTGCTCACGTTGTTTGGATCCTT
TATTGCCTACATCTATTCGGAGCCTCCGCTCAAGCTCAAGCAGAATGGAT
GGCTGGGATGCTACGCATTGGGCGCCAGCTATATCAGCTTGCCGTGGTGG
TGCGGCCATGCCGCTTTTGGTCAGCTGGATTGGAAGGTCATGGTGCTTAC
GTTGTTTTATTCCTTTGCTGGACTGGGCATTGCGATCGTCAACGACTTCA
AGAGCGTCGAAGGTGATCGAGCCACTGGTATGCAGAGTCTGCCCGTCATG
TTTGGCATTGACAAGGCCAAATGGATTTGCGCCGGTATGATTGATGTCTT
CCAGTTGTTAGTGGCCGCCGTCATTTATTCTATTGGCGAACAAAAGTATG
CAGCCGGTATTCTTGCATTGGTCATCCCGCAGATTGTGCTCCAGTTCCAG
TACTTGTTGAAGGACCCGGTCAAGTATGACGTCAAGTATCAAGCTGCTGC
GCAACCATTTCTGGTCATTGGCATCCTTGTCACCGCTCTTGCTGTCGGCC
ATCATGGACCGCTCATGTGA
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protein sequence of Ggra2079.t1

>Ggra2079.t1 ID=Ggra2079.t1|Name=Ggra2079.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=290bp
MKPVTWVPLLWGVTCGAAASGNYTWTPEHVAQAAACMVLAGPLLTGYTQT
LNDWCDRDIDAINEPQRPIPSGAISESEVKTQLLALLFAGIALSVGIDVW
THHDWPVNTVLTLFGSFIAYIYSEPPLKLKQNGWLGCYALGASYISLPWW
CGHAAFGQLDWKVMVLTLFYSFAGLGIAIVNDFKSVEGDRATGMQSLPVM
FGIDKAKWICAGMIDVFQLLVAAVIYSIGEQKYAAGILALVIPQIVLQFQ
YLLKDPVKYDVKYQAAAQPFLVIGILVTALAVGHHGPLM*
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mRNA from alignment at tig00000900_pilon:115432..116301+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2079.t1 ID=Ggra2079.t1|Name=Ggra2079.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000900_pilon:115432..116301+ (Gracilaria gracilis GNS1m male)
ATGAAGCCCGTCACCTGGGTGCCGCTGCTGTGGGGCGTCACCTGCGGCGC
CGCCGCCTCCGGCAACTATACGTGGACGCCGGAACACGTCGCGCAGGCCG
CCGCCTGCATGGTGCTGGCGGGGCCGTTGTTGACCGGCTACACGCAGACG
TTGAATGACTGGTGTGACCGCGACATCGATGCCATCAATGAGCCGCAGCG
ACCCATTCCGTCCGGCGCCATCTCGGAGAGCGAGGTCAAGACGCAGTTGC
TTGCACTGTTATTCGCGGGCATTGCATTGAGCGTTGGTATCGATGTGTGG
ACACACCACGATTGGCCCGTCAATACCGTGCTCACGTTGTTTGGATCCTT
TATTGCCTACATCTATTCGGAGCCTCCGCTCAAGCTCAAGCAGAATGGAT
GGCTGGGATGCTACGCATTGGGCGCCAGCTATATCAGCTTGCCGTGGTGG
TGCGGCCATGCCGCTTTTGGTCAGCTGGATTGGAAGGTCATGGTGCTTAC
GTTGTTTTATTCCTTTGCTGGACTGGGCATTGCGATCGTCAACGACTTCA
AGAGCGTCGAAGGTGATCGAGCCACTGGTATGCAGAGTCTGCCCGTCATG
TTTGGCATTGACAAGGCCAAATGGATTTGCGCCGGTATGATTGATGTCTT
CCAGTTGTTAGTGGCCGCCGTCATTTATTCTATTGGCGAACAAAAGTATG
CAGCCGGTATTCTTGCATTGGTCATCCCGCAGATTGTGCTCCAGTTCCAG
TACTTGTTGAAGGACCCGGTCAAGTATGACGTCAAGTATCAAGCTGCTGC
GCAACCATTTCTGGTCATTGGCATCCTTGTCACCGCTCTTGCTGTCGGCC
ATCATGGACCGCTCATGTGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:115432..116301+

>Ggra2079.t1 ID=Ggra2079.t1|Name=Ggra2079.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=870bp|location=Sequence derived from alignment at tig00000900_pilon:115432..116301+ (Gracilaria gracilis GNS1m male)
ATGAAGCCCGTCACCTGGGTGCCGCTGCTGTGGGGCGTCACCTGCGGCGC
CGCCGCCTCCGGCAACTATACGTGGACGCCGGAACACGTCGCGCAGGCCG
CCGCCTGCATGGTGCTGGCGGGGCCGTTGTTGACCGGCTACACGCAGACG
TTGAATGACTGGTGTGACCGCGACATCGATGCCATCAATGAGCCGCAGCG
ACCCATTCCGTCCGGCGCCATCTCGGAGAGCGAGGTCAAGACGCAGTTGC
TTGCACTGTTATTCGCGGGCATTGCATTGAGCGTTGGTATCGATGTGTGG
ACACACCACGATTGGCCCGTCAATACCGTGCTCACGTTGTTTGGATCCTT
TATTGCCTACATCTATTCGGAGCCTCCGCTCAAGCTCAAGCAGAATGGAT
GGCTGGGATGCTACGCATTGGGCGCCAGCTATATCAGCTTGCCGTGGTGG
TGCGGCCATGCCGCTTTTGGTCAGCTGGATTGGAAGGTCATGGTGCTTAC
GTTGTTTTATTCCTTTGCTGGACTGGGCATTGCGATCGTCAACGACTTCA
AGAGCGTCGAAGGTGATCGAGCCACTGGTATGCAGAGTCTGCCCGTCATG
TTTGGCATTGACAAGGCCAAATGGATTTGCGCCGGTATGATTGATGTCTT
CCAGTTGTTAGTGGCCGCCGTCATTTATTCTATTGGCGAACAAAAGTATG
CAGCCGGTATTCTTGCATTGGTCATCCCGCAGATTGTGCTCCAGTTCCAG
TACTTGTTGAAGGACCCGGTCAAGTATGACGTCAAGTATCAAGCTGCTGC
GCAACCATTTCTGGTCATTGGCATCCTTGTCACCGCTCTTGCTGTCGGCC
ATCATGGACCGCTCATGTGA
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