Ggra2183.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2183.t1
Unique NameGgra2183.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length409
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:574236..575462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog67593.Physo137940
PFAMsDUF1771,Smr
Max annot lvl4776|Peronosporales
Evalue5.35e-29
EggNOG OGsKOG2401@1|root,KOG2401@2759|Eukaryota,3QB69@4776|Peronosporales
DescriptionDUF1771
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2183Ggra2183Gracilaria gracilis GNS1m malegenetig00000900_pilon 574236..575462 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2183.t1.stop1Ggra2183.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 574236..574238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2183.t1.CDS1Ggra2183.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 574236..575462 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2183.t1.exon1Ggra2183.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 574236..575462 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2183.t1.start1Ggra2183.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 575460..575462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2183.t1Ggra2183.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 574236..575462 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2183.t1 ID=Ggra2183.t1|Name=Ggra2183.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=409bp
MQHGAHDQSGINPKSVNSNENGTDYTTVDYVSSNFSSLSFTDNPFHSSYP
FCNNHQPTYPAYDDNTTFTSSPLSQIDFGSTHSQRLHPYPYPYSHEPASS
DVASYDITQPVQPVSPPAKSTLNAHAPEFVPSFAVLPAEEPLPADHPLYT
PPPVFANPETTVEHAVENFERQFPPLPGSKTSPTEKGKPVLRKALGWHEI
EHEQREKARWQKHLDVKHNFVHGMQSVNDSPLAHEEIAPVSGDVGNVWVS
TGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGR
EANERMKELHSKAANAIFATRNPPHVLDVIDLHGLHVNEALERLPSALEG
KHGRIRILTGTGHHTKGTGRARLRPAVKKWLKDNDYFFEEVVDANEYVGS
FIVDIENR*
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spliced messenger RNA

>Ggra2183.t1 ID=Ggra2183.t1|Name=Ggra2183.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00000900_pilon:574236..575462- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCACGGGGCACATGACCAAAGTGGCATAAACCCAAAGTCCGTCAA
CTCAAACGAAAATGGCACCGACTACACCACAGTCGATTACGTCAGCTCAA
ACTTTAGCTCTCTTTCGTTTACAGACAACCCTTTCCATTCGTCCTATCCG
TTTTGCAACAATCACCAACCGACGTACCCCGCATATGATGACAACACCAC
ATTCACATCCTCACCGCTCTCCCAGATAGACTTCGGAAGCACGCACAGCC
AACGTCTGCACCCGTACCCGTACCCCTATTCGCACGAACCCGCTTCGTCT
GATGTTGCATCTTATGACATTACCCAGCCCGTGCAACCTGTTTCGCCTCC
TGCAAAGTCCACTCTCAATGCTCACGCCCCGGAATTTGTTCCATCTTTTG
CGGTCTTGCCGGCTGAGGAACCCTTGCCAGCAGACCATCCCCTCTACACC
CCCCCTCCGGTGTTTGCCAACCCTGAGACCACAGTCGAACACGCGGTAGA
GAACTTTGAACGTCAATTCCCCCCTCTCCCTGGCTCAAAGACTTCACCCA
CTGAGAAGGGAAAACCAGTACTGCGGAAGGCGTTAGGCTGGCATGAAATA
GAACATGAACAACGCGAGAAAGCGAGATGGCAAAAGCATCTGGACGTAAA
ACACAACTTTGTGCACGGGATGCAATCCGTAAATGATTCGCCACTAGCGC
ACGAAGAAATAGCACCTGTATCTGGGGACGTGGGTAATGTCTGGGTTTCT
ACAGGCCGAAGTGTAGCTGAGCTTTACGAAGAACTGAGGGCCGAAGCAGC
GGAGCAAGCCTCAATACGGAACAAGTATTTCGACAGAGCTGCGGCGGCAT
TCAAGAGGAATGACGGAGCGACTGCGAAGAAGATGGGCGCATTAGGGAGA
GAGGCGAATGAGAGGATGAAAGAGCTGCACAGCAAAGCTGCAAATGCCAT
TTTCGCTACCAGAAACCCACCTCATGTTCTCGATGTAATTGACCTCCACG
GCTTGCATGTTAACGAAGCTTTAGAGAGATTGCCCTCTGCTTTGGAAGGT
AAGCACGGAAGAATTCGTATTCTTACTGGTACTGGTCATCACACAAAGGG
TACAGGGAGAGCCAGACTACGGCCTGCAGTTAAGAAGTGGTTGAAAGACA
ATGATTACTTCTTTGAAGAAGTTGTTGATGCCAACGAGTACGTCGGCAGT
TTCATTGTTGACATCGAAAATAGATGA
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protein sequence of Ggra2183.t1

>Ggra2183.t1 ID=Ggra2183.t1|Name=Ggra2183.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=409bp
MQHGAHDQSGINPKSVNSNENGTDYTTVDYVSSNFSSLSFTDNPFHSSYP
FCNNHQPTYPAYDDNTTFTSSPLSQIDFGSTHSQRLHPYPYPYSHEPASS
DVASYDITQPVQPVSPPAKSTLNAHAPEFVPSFAVLPAEEPLPADHPLYT
PPPVFANPETTVEHAVENFERQFPPLPGSKTSPTEKGKPVLRKALGWHEI
EHEQREKARWQKHLDVKHNFVHGMQSVNDSPLAHEEIAPVSGDVGNVWVS
TGRSVAELYEELRAEAAEQASIRNKYFDRAAAAFKRNDGATAKKMGALGR
EANERMKELHSKAANAIFATRNPPHVLDVIDLHGLHVNEALERLPSALEG
KHGRIRILTGTGHHTKGTGRARLRPAVKKWLKDNDYFFEEVVDANEYVGS
FIVDIENR*
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mRNA from alignment at tig00000900_pilon:574236..575462-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2183.t1 ID=Ggra2183.t1|Name=Ggra2183.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00000900_pilon:574236..575462- (Gracilaria gracilis GNS1m male)
ATGCAGCACGGGGCACATGACCAAAGTGGCATAAACCCAAAGTCCGTCAA
CTCAAACGAAAATGGCACCGACTACACCACAGTCGATTACGTCAGCTCAA
ACTTTAGCTCTCTTTCGTTTACAGACAACCCTTTCCATTCGTCCTATCCG
TTTTGCAACAATCACCAACCGACGTACCCCGCATATGATGACAACACCAC
ATTCACATCCTCACCGCTCTCCCAGATAGACTTCGGAAGCACGCACAGCC
AACGTCTGCACCCGTACCCGTACCCCTATTCGCACGAACCCGCTTCGTCT
GATGTTGCATCTTATGACATTACCCAGCCCGTGCAACCTGTTTCGCCTCC
TGCAAAGTCCACTCTCAATGCTCACGCCCCGGAATTTGTTCCATCTTTTG
CGGTCTTGCCGGCTGAGGAACCCTTGCCAGCAGACCATCCCCTCTACACC
CCCCCTCCGGTGTTTGCCAACCCTGAGACCACAGTCGAACACGCGGTAGA
GAACTTTGAACGTCAATTCCCCCCTCTCCCTGGCTCAAAGACTTCACCCA
CTGAGAAGGGAAAACCAGTACTGCGGAAGGCGTTAGGCTGGCATGAAATA
GAACATGAACAACGCGAGAAAGCGAGATGGCAAAAGCATCTGGACGTAAA
ACACAACTTTGTGCACGGGATGCAATCCGTAAATGATTCGCCACTAGCGC
ACGAAGAAATAGCACCTGTATCTGGGGACGTGGGTAATGTCTGGGTTTCT
ACAGGCCGAAGTGTAGCTGAGCTTTACGAAGAACTGAGGGCCGAAGCAGC
GGAGCAAGCCTCAATACGGAACAAGTATTTCGACAGAGCTGCGGCGGCAT
TCAAGAGGAATGACGGAGCGACTGCGAAGAAGATGGGCGCATTAGGGAGA
GAGGCGAATGAGAGGATGAAAGAGCTGCACAGCAAAGCTGCAAATGCCAT
TTTCGCTACCAGAAACCCACCTCATGTTCTCGATGTAATTGACCTCCACG
GCTTGCATGTTAACGAAGCTTTAGAGAGATTGCCCTCTGCTTTGGAAGGT
AAGCACGGAAGAATTCGTATTCTTACTGGTACTGGTCATCACACAAAGGG
TACAGGGAGAGCCAGACTACGGCCTGCAGTTAAGAAGTGGTTGAAAGACA
ATGATTACTTCTTTGAAGAAGTTGTTGATGCCAACGAGTACGTCGGCAGT
TTCATTGTTGACATCGAAAATAGATGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:574236..575462-

>Ggra2183.t1 ID=Ggra2183.t1|Name=Ggra2183.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1227bp|location=Sequence derived from alignment at tig00000900_pilon:574236..575462- (Gracilaria gracilis GNS1m male)
ATGCAGCACGGGGCACATGACCAAAGTGGCATAAACCCAAAGTCCGTCAA
CTCAAACGAAAATGGCACCGACTACACCACAGTCGATTACGTCAGCTCAA
ACTTTAGCTCTCTTTCGTTTACAGACAACCCTTTCCATTCGTCCTATCCG
TTTTGCAACAATCACCAACCGACGTACCCCGCATATGATGACAACACCAC
ATTCACATCCTCACCGCTCTCCCAGATAGACTTCGGAAGCACGCACAGCC
AACGTCTGCACCCGTACCCGTACCCCTATTCGCACGAACCCGCTTCGTCT
GATGTTGCATCTTATGACATTACCCAGCCCGTGCAACCTGTTTCGCCTCC
TGCAAAGTCCACTCTCAATGCTCACGCCCCGGAATTTGTTCCATCTTTTG
CGGTCTTGCCGGCTGAGGAACCCTTGCCAGCAGACCATCCCCTCTACACC
CCCCCTCCGGTGTTTGCCAACCCTGAGACCACAGTCGAACACGCGGTAGA
GAACTTTGAACGTCAATTCCCCCCTCTCCCTGGCTCAAAGACTTCACCCA
CTGAGAAGGGAAAACCAGTACTGCGGAAGGCGTTAGGCTGGCATGAAATA
GAACATGAACAACGCGAGAAAGCGAGATGGCAAAAGCATCTGGACGTAAA
ACACAACTTTGTGCACGGGATGCAATCCGTAAATGATTCGCCACTAGCGC
ACGAAGAAATAGCACCTGTATCTGGGGACGTGGGTAATGTCTGGGTTTCT
ACAGGCCGAAGTGTAGCTGAGCTTTACGAAGAACTGAGGGCCGAAGCAGC
GGAGCAAGCCTCAATACGGAACAAGTATTTCGACAGAGCTGCGGCGGCAT
TCAAGAGGAATGACGGAGCGACTGCGAAGAAGATGGGCGCATTAGGGAGA
GAGGCGAATGAGAGGATGAAAGAGCTGCACAGCAAAGCTGCAAATGCCAT
TTTCGCTACCAGAAACCCACCTCATGTTCTCGATGTAATTGACCTCCACG
GCTTGCATGTTAACGAAGCTTTAGAGAGATTGCCCTCTGCTTTGGAAGGT
AAGCACGGAAGAATTCGTATTCTTACTGGTACTGGTCATCACACAAAGGG
TACAGGGAGAGCCAGACTACGGCCTGCAGTTAAGAAGTGGTTGAAAGACA
ATGATTACTTCTTTGAAGAAGTTGTTGATGCCAACGAGTACGTCGGCAGT
TTCATTGTTGACATCGAAAATAGATGA
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